Wall clock time and date at job start Tue Mar 31 2020 07:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53011 * 109.47040 * 2 1 4 4 C 1.53001 * 109.47551 * 240.00254 * 2 1 3 5 5 C 1.50699 * 109.46968 * 59.99492 * 4 2 1 6 6 H 1.07997 * 120.00511 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99385 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00408 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99509 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47037 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46983 * 120.00241 * 9 7 5 12 12 H 1.48494 * 109.46947 * 239.99765 * 9 7 5 13 13 C 1.52995 * 109.47124 * 119.99651 * 2 1 3 14 14 N 1.46505 * 109.47499 * 300.00257 * 13 2 1 15 15 C 1.34774 * 119.99826 * 179.97438 * 14 13 2 16 16 O 1.21617 * 120.00188 * 0.02562 * 15 14 13 17 17 C 1.47243 * 119.99439 * 179.97438 * 15 14 13 18 18 C 1.40244 * 120.23712 * 269.99998 * 17 15 14 19 19 O 1.35655 * 120.12153 * 359.97438 * 18 17 15 20 20 C 1.38549 * 119.75570 * 180.25588 * 18 17 15 21 21 C 1.38244 * 120.23751 * 359.46668 * 20 18 17 22 22 C 1.38244 * 120.48071 * 0.51477 * 21 20 18 23 23 C 1.38542 * 120.23978 * 359.76584 * 22 21 20 24 24 O 1.35661 * 120.12423 * 179.97438 * 23 22 21 25 25 H 1.08993 * 109.47150 * 300.00320 * 1 2 3 26 26 H 1.08999 * 109.47064 * 60.00419 * 1 2 3 27 27 H 1.09001 * 109.46875 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46700 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46643 * 300.00206 * 3 2 1 30 30 H 1.09000 * 109.46758 * 59.99754 * 3 2 1 31 31 H 1.09001 * 109.47135 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46472 * 299.99444 * 4 2 1 33 33 H 0.96998 * 120.00039 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47517 * 180.02562 * 13 2 1 35 35 H 1.09001 * 109.47408 * 60.00245 * 13 2 1 36 36 H 0.96999 * 119.99458 * 0.02562 * 14 13 2 37 37 H 0.96700 * 114.00230 * 90.00054 * 19 18 17 38 38 H 1.08000 * 119.88334 * 179.70287 * 20 18 17 39 39 H 1.07992 * 119.75944 * 180.27906 * 21 20 18 40 40 H 1.08003 * 119.87991 * 179.73828 * 22 21 20 41 41 H 0.96696 * 114.00164 * 269.97533 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3807 7 6 1.8705 -0.4822 -3.7319 8 7 2.6259 -1.5519 -3.8526 9 14 1.2483 0.3988 -5.2572 10 1 0.4247 1.5664 -4.8530 11 1 2.4036 0.8647 -6.0656 12 1 0.4228 -0.5340 -6.0655 13 6 2.0400 -0.7211 1.2492 14 7 1.5516 -0.0305 2.4455 15 6 1.8769 -0.4913 3.6695 16 8 2.5761 -1.4801 3.7811 17 6 1.3865 0.2031 4.8717 18 6 2.1411 1.2351 5.4484 19 8 3.3279 1.5983 4.9010 20 6 1.6727 1.8782 6.5827 21 6 0.4610 1.5135 7.1395 22 6 -0.2911 0.4980 6.5789 23 6 0.1611 -0.1624 5.4480 24 8 -0.5786 -1.1589 4.9001 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1301 -0.7215 -1.2490 32 1 1.6768 -1.7489 -1.2492 33 1 2.8597 -1.8837 -4.7335 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7488 1.2493 36 1 0.9936 0.7579 2.3564 37 1 3.2564 2.2928 4.2319 38 1 2.2544 2.6699 7.0313 39 1 0.1012 2.0231 8.0210 40 1 -1.2343 0.2181 7.0243 41 1 -0.3770 -2.0370 5.2512 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436735409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:56 Heat of formation + Delta-G solvation = -138.285895 kcal Electronic energy + Delta-G solvation = -23625.121047 eV Core-core repulsion = 20082.823987 eV Total energy + Delta-G solvation = -3542.297060 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.71192 -40.11394 -38.92304 -38.56770 -36.76657 -35.27962 -33.98822 -31.81159 -30.37854 -29.10874 -27.99308 -27.75914 -25.37562 -24.15656 -23.59853 -21.69870 -20.27726 -19.79474 -18.61490 -18.47878 -18.34107 -17.46177 -17.12995 -16.46090 -16.36862 -16.05858 -15.85583 -15.60483 -15.04271 -14.90831 -14.71998 -14.36007 -14.00651 -13.95848 -13.77116 -13.15550 -12.90478 -12.78048 -12.70832 -12.62561 -12.36895 -12.26231 -12.17092 -11.97332 -11.78944 -11.57004 -11.25719 -10.93505 -10.82112 -10.52868 -10.17265 -9.93864 -9.64913 -8.14531 -6.22556 -0.06841 0.11155 1.41790 1.42740 1.45091 1.54637 2.12141 2.43014 2.45431 2.88499 3.20058 3.39906 3.62037 3.93461 4.02646 4.06293 4.11090 4.18973 4.36890 4.61591 4.65615 4.67623 4.71372 4.75798 4.92620 5.05914 5.09820 5.18799 5.23206 5.32500 5.33689 5.42315 5.47559 5.50293 5.55098 5.63932 5.77658 5.88845 6.28739 6.44029 6.62426 6.68565 6.92626 7.10223 7.45363 8.98316 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028408 B = 0.003324 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.401657 B = 8420.472114 C = 8551.772446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.041 3.959 5 C -0.513 4.513 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.959 3.041 10 H -0.256 1.256 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.141 3.859 14 N -0.695 5.695 15 C 0.572 3.428 16 O -0.586 6.586 17 C -0.210 4.210 18 C 0.146 3.854 19 O -0.507 6.507 20 C -0.153 4.153 21 C -0.058 4.058 22 C -0.153 4.153 23 C 0.145 3.855 24 O -0.506 6.506 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.035 0.965 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.068 0.932 31 H -0.013 1.013 32 H -0.015 1.015 33 H 0.260 0.740 34 H 0.048 0.952 35 H 0.044 0.956 36 H 0.411 0.589 37 H 0.412 0.588 38 H 0.162 0.838 39 H 0.175 0.825 40 H 0.162 0.838 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.574 10.882 23.628 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.180 1.180 11 H -0.210 1.210 12 H -0.211 1.211 13 C 0.017 3.983 14 N -0.346 5.346 15 C 0.359 3.641 16 O -0.467 6.467 17 C -0.215 4.215 18 C 0.100 3.900 19 O -0.321 6.321 20 C -0.171 4.171 21 C -0.075 4.075 22 C -0.171 4.171 23 C 0.100 3.900 24 O -0.319 6.319 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.005 0.995 32 H 0.003 0.997 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.249 0.751 37 H 0.272 0.728 38 H 0.179 0.821 39 H 0.193 0.807 40 H 0.179 0.821 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -7.029 10.114 23.592 26.613 hybrid contribution 0.121 -0.259 -1.627 1.652 sum -6.908 9.855 21.965 25.046 Atomic orbital electron populations 1.21679 0.93711 1.00903 1.01473 1.20712 0.96580 0.96513 0.92607 1.21693 1.00086 0.94368 1.01668 1.18966 0.94316 0.94151 0.92267 1.21613 1.30396 1.12079 0.90990 0.90831 1.25962 0.95646 0.95861 1.02766 1.70129 1.38849 1.24982 1.24060 0.85473 0.78051 0.78824 0.79159 1.17958 1.21012 1.21091 1.21280 0.97832 0.95404 0.83801 1.45956 1.52295 1.31778 1.04551 1.18321 0.78708 0.83219 0.83883 1.90777 1.39968 1.28426 1.87495 1.20687 0.97552 1.03667 0.99564 1.18491 0.84558 0.92952 0.94004 1.84760 1.26331 1.61241 1.59768 1.21691 0.97625 1.01786 0.96028 1.21495 0.92260 0.94398 0.99383 1.21695 1.02604 0.98419 0.94372 1.18499 0.87335 0.91821 0.92374 1.84694 1.61237 1.19208 1.66790 0.91715 0.92288 0.94546 0.94093 0.92347 0.91327 0.99481 0.99697 0.93161 0.93359 0.93714 0.75119 0.72840 0.82081 0.80719 0.82083 0.73023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.22 8.05 71.98 0.58 -3.64 16 2 C -0.06 -2.46 0.54 -52.18 -0.03 -2.49 16 3 C -0.12 -4.05 8.05 71.99 0.58 -3.47 16 4 C 0.04 2.09 4.04 29.85 0.12 2.21 16 5 C -0.51 -27.61 7.65 25.60 0.20 -27.41 16 6 H 0.07 3.70 5.68 -2.91 -0.02 3.68 16 7 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 8 N -0.94 -57.47 13.29 21.45 0.28 -57.19 16 9 Si 0.96 43.69 29.54 68.60 2.03 45.72 16 10 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 C 0.14 5.30 4.56 86.38 0.39 5.70 16 14 N -0.69 -21.20 4.96 -466.56 -2.31 -23.51 16 15 C 0.57 18.91 6.32 86.61 0.55 19.46 16 16 O -0.59 -24.92 17.11 -4.08 -0.07 -24.99 16 17 C -0.21 -5.32 5.65 -19.93 -0.11 -5.43 16 18 C 0.15 3.04 6.71 22.83 0.15 3.19 16 19 O -0.51 -10.97 12.95 -89.70 -1.16 -12.13 16 20 C -0.15 -2.05 9.97 22.35 0.22 -1.82 16 21 C -0.06 -0.57 10.02 22.27 0.22 -0.35 16 22 C -0.15 -2.04 9.97 22.34 0.22 -1.81 16 23 C 0.15 3.02 6.72 22.83 0.15 3.18 16 24 O -0.51 -10.87 12.95 -89.77 -1.16 -12.03 16 25 H 0.06 1.80 6.86 -2.39 -0.02 1.79 16 26 H 0.06 2.17 6.62 -2.39 -0.02 2.16 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 2.09 6.62 -2.39 -0.02 2.07 16 30 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 31 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 32 H -0.02 -0.89 8.14 -2.39 -0.02 -0.90 16 33 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.41 10.28 6.15 -92.71 -0.57 9.71 16 37 H 0.41 5.20 9.06 -74.06 -0.67 4.53 16 38 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.18 0.39 8.06 -2.91 -0.02 0.36 16 40 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 41 H 0.41 6.14 9.06 -74.06 -0.67 5.47 16 Total: -1.00 -78.34 344.05 0.49 -77.85 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -0.83 Total: 18.82 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 3.71 Total: -12.54 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -2.03 Total: -80.70 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -2.39 Total: -49.15 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -78.34 0.49 -77.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436735409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.435 kcal (2) G-P(sol) polarization free energy of solvation -78.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds