Wall clock time and date at job start Tue Mar 31 2020 07:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47125 * 2 1 4 4 C 1.53001 * 109.46872 * 240.00392 * 2 1 3 5 5 C 1.50698 * 109.47348 * 59.99699 * 4 2 1 6 6 H 1.08001 * 120.00010 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00210 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99489 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00207 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47182 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47450 * 120.00255 * 9 7 5 12 12 H 1.48498 * 109.46984 * 240.00241 * 9 7 5 13 13 C 1.52992 * 109.47404 * 119.99858 * 2 1 3 14 14 N 1.46498 * 109.47601 * 300.00255 * 13 2 1 15 15 C 1.34779 * 120.00490 * 179.97438 * 14 13 2 16 16 O 1.21624 * 119.99700 * 0.02562 * 15 14 13 17 17 C 1.47295 * 120.00049 * 179.97438 * 15 14 13 18 18 C 1.39852 * 120.13867 * 0.02562 * 17 15 14 19 19 C 1.37541 * 119.96811 * 179.97438 * 18 17 15 20 20 C 1.39187 * 120.23709 * 359.97438 * 19 18 17 21 21 O 1.35716 * 119.86400 * 180.02562 * 20 19 18 22 22 C 1.38684 * 120.27544 * 0.04369 * 20 19 18 23 23 C 1.38440 * 120.02913 * 359.95772 * 22 20 19 24 24 O 1.35668 * 120.11650 * 180.29102 * 23 22 20 25 25 H 1.09006 * 109.46788 * 300.00097 * 1 2 3 26 26 H 1.08998 * 109.47222 * 59.99741 * 1 2 3 27 27 H 1.09001 * 109.47083 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46970 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46829 * 300.00505 * 3 2 1 30 30 H 1.09006 * 109.46914 * 59.99975 * 3 2 1 31 31 H 1.09002 * 109.46850 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.46747 * 299.99570 * 4 2 1 33 33 H 0.97004 * 119.99234 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.47430 * 179.97438 * 13 2 1 35 35 H 1.09006 * 109.47095 * 60.00369 * 13 2 1 36 36 H 0.96997 * 119.99766 * 359.97438 * 14 13 2 37 37 H 1.08001 * 120.01769 * 0.02562 * 18 17 15 38 38 H 1.07997 * 119.88419 * 180.02562 * 19 18 17 39 39 H 0.96707 * 114.00207 * 89.99732 * 21 20 19 40 40 H 1.07997 * 119.98332 * 179.97438 * 22 20 19 41 41 H 0.96693 * 114.00097 * 269.72598 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8710 -0.4814 -3.7320 8 7 2.6272 -1.5507 -3.8527 9 14 1.2489 0.3996 -5.2572 10 1 0.4243 1.5666 -4.8530 11 1 2.4041 0.8664 -6.0651 12 1 0.4241 -0.5336 -6.0660 13 6 2.0401 -0.7212 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8770 -0.4914 3.6695 16 8 2.5763 -1.4802 3.7811 17 6 1.3865 0.2033 4.8722 18 6 0.5826 1.3408 4.7473 19 6 0.1261 1.9865 5.8726 20 6 0.4607 1.5115 7.1375 21 8 0.0056 2.1542 8.2428 22 6 1.2575 0.3845 7.2729 23 6 1.7232 -0.2740 6.1478 24 8 2.4979 -1.3801 6.2782 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 3.1300 -0.7208 -1.2495 32 1 1.6766 -1.7489 -1.2493 33 1 2.8614 -1.8821 -4.7338 34 1 3.1300 -0.7216 1.2489 35 1 1.6768 -1.7489 1.2492 36 1 0.9944 0.7582 2.3564 37 1 0.3198 1.7117 3.7676 38 1 -0.4949 2.8646 5.7746 39 1 -0.8478 1.8306 8.5626 40 1 1.5145 0.0204 8.2566 41 1 3.4461 -1.1941 6.3145 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436838389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:58 Heat of formation + Delta-G solvation = -110.262264 kcal Electronic energy + Delta-G solvation = -23204.836148 eV Core-core repulsion = 19663.754284 eV Total energy + Delta-G solvation = -3541.081864 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.70956 -39.20129 -38.02886 -36.91626 -36.04980 -33.60974 -32.16032 -30.74503 -29.94258 -27.13842 -26.54289 -26.23105 -23.90436 -23.10739 -22.47719 -20.46538 -19.36527 -18.66191 -17.57722 -17.37390 -16.65375 -16.26434 -15.51442 -15.29391 -15.25925 -14.90066 -14.52963 -14.44105 -13.76383 -13.58196 -13.24528 -13.17675 -12.82474 -12.71620 -12.28740 -12.08284 -11.97400 -11.17796 -11.11474 -11.04643 -11.03738 -10.85006 -10.66910 -10.42916 -10.26198 -9.90409 -9.78402 -9.29322 -9.19456 -8.98546 -8.93318 -8.67512 -8.37632 -6.01473 -4.02786 0.41981 0.86404 2.67533 3.29021 3.33648 3.37505 3.39797 3.52635 3.57083 4.12615 4.42881 4.44128 4.65804 4.74022 5.00652 5.24820 5.34173 5.42306 5.49067 5.60102 5.71447 5.77201 5.90543 5.91821 6.13314 6.16591 6.19849 6.28126 6.36598 6.53161 6.60127 6.73100 7.03252 7.04896 7.10113 7.16177 7.48453 7.62508 7.70627 7.74626 7.97295 8.37019 8.41020 9.02234 9.60498 11.10038 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032217 B = 0.003003 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.890496 B = 9320.906720 C = 9988.377709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.129 3.871 14 N -0.717 5.717 15 C 0.550 3.450 16 O -0.527 6.527 17 C -0.169 4.169 18 C -0.055 4.055 19 C -0.162 4.162 20 C 0.144 3.856 21 O -0.497 6.497 22 C -0.186 4.186 23 C 0.185 3.815 24 O -0.475 6.475 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.259 0.741 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.396 0.604 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.396 0.604 40 H 0.140 0.860 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 7.615 21.681 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.006 3.994 14 N -0.370 5.370 15 C 0.336 3.664 16 O -0.404 6.404 17 C -0.173 4.173 18 C -0.073 4.073 19 C -0.181 4.181 20 C 0.099 3.901 21 O -0.308 6.308 22 C -0.205 4.205 23 C 0.138 3.862 24 O -0.286 6.286 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.232 0.768 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.253 0.747 40 H 0.158 0.842 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -4.795 6.793 21.541 23.090 hybrid contribution -0.574 0.774 -0.904 1.321 sum -5.369 7.567 20.637 22.627 Atomic orbital electron populations 1.21769 0.95271 1.01243 1.00178 1.20917 0.95487 0.95867 0.95080 1.21768 1.00614 0.95878 1.00190 1.19096 0.96388 0.95256 0.89435 1.21215 1.31138 1.12055 0.90498 0.92197 1.25018 0.95316 0.95088 0.99110 1.69979 1.36974 1.23052 1.23345 0.86591 0.78604 0.79673 0.83446 1.19802 1.21137 1.21129 1.21652 0.98985 0.96089 0.82660 1.46141 1.53171 1.31891 1.05755 1.17943 0.81094 0.84303 0.83034 1.90815 1.37577 1.25397 1.86641 1.20608 1.04304 0.98274 0.94082 1.21151 0.94150 0.92917 0.99127 1.21363 1.03217 1.02143 0.91371 1.18430 0.95034 0.90467 0.86165 1.84756 1.41836 1.61220 1.43031 1.21669 1.03451 0.95907 0.99505 1.18234 0.92686 0.85350 0.89927 1.84747 1.21457 1.27276 1.95136 0.95379 0.91349 0.93278 0.93290 0.91355 0.95367 0.96300 0.96288 0.93080 0.91659 0.91642 0.76780 0.84605 0.84468 0.74687 0.84182 0.74348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.07 -1.36 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.41 7.65 -34.44 -0.26 -13.68 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.13 2.27 4.56 -4.05 -0.02 2.25 16 14 N -0.72 -10.47 4.91 -61.43 -0.30 -10.77 16 15 C 0.55 8.52 7.76 -12.58 -0.10 8.42 16 16 O -0.53 -9.99 15.15 -16.67 -0.25 -10.24 16 17 C -0.17 -2.09 5.89 -104.84 -0.62 -2.70 16 18 C -0.05 -0.52 9.52 -39.23 -0.37 -0.89 16 19 C -0.16 -1.35 9.96 -39.48 -0.39 -1.74 16 20 C 0.14 1.24 6.70 -39.06 -0.26 0.98 16 21 O -0.50 -3.50 13.48 -18.85 -0.25 -3.75 16 22 C -0.19 -1.76 9.91 -39.34 -0.39 -2.15 16 23 C 0.18 2.17 6.71 -38.73 -0.26 1.91 16 24 O -0.47 -5.86 11.56 -40.63 -0.47 -6.33 16 25 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 26 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 30 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.40 4.81 4.18 -40.82 -0.17 4.64 16 37 H 0.14 1.05 6.39 -52.49 -0.34 0.72 16 38 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.40 0.86 9.06 45.56 0.41 1.27 16 40 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.40 3.40 9.06 45.56 0.41 3.81 16 LS Contribution 338.66 15.07 5.10 5.10 Total: -1.00 -33.81 338.66 -6.72 -40.54 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -3.90 Total: 5.62 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.37 Total: -10.64 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.43 Total: -36.32 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.98 Total: -20.33 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.81 -6.72 -40.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436838389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.725 kcal (2) G-P(sol) polarization free energy of solvation -33.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds