Wall clock time and date at job start Tue Mar 31 2020 06:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99897 * 2 1 4 4 C 1.53002 * 109.46975 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47436 * 65.00079 * 4 3 2 6 6 C 1.37098 * 119.99765 * 270.00036 * 5 4 3 7 7 H 1.08002 * 120.00100 * 143.05112 * 6 5 4 8 8 C 1.38953 * 120.00322 * 323.05356 * 6 5 4 9 9 N 1.31417 * 119.99935 * 338.30023 * 8 6 5 10 10 Si 1.86799 * 120.00212 * 158.30279 * 8 6 5 11 11 H 1.48494 * 109.47191 * 89.99889 * 10 8 6 12 12 H 1.48500 * 109.46823 * 209.99839 * 10 8 6 13 13 H 1.48497 * 109.46996 * 329.99897 * 10 8 6 14 14 C 1.34772 * 120.00135 * 90.00099 * 5 4 3 15 15 O 1.21292 * 120.00283 * 354.78043 * 14 5 4 16 16 C 1.50707 * 119.99970 * 174.77652 * 14 5 4 17 17 O 1.42898 * 109.47114 * 182.06772 * 16 14 5 18 18 C 1.35901 * 116.99940 * 181.94923 * 17 16 14 19 19 C 1.38754 * 120.05620 * 5.50119 * 18 17 16 20 20 C 1.38119 * 119.94361 * 179.97438 * 19 18 17 21 21 C 1.38287 * 120.05632 * 359.75230 * 20 19 18 22 22 C 1.38248 * 120.11277 * 0.50365 * 21 20 19 23 23 C 1.50691 * 119.97392 * 179.76625 * 22 21 20 24 24 C 1.38169 * 120.05091 * 359.49612 * 22 21 20 25 25 H 1.09005 * 109.46985 * 59.99823 * 1 2 3 26 26 H 1.08995 * 109.47224 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46827 * 299.99792 * 1 2 3 28 28 H 1.08999 * 109.47465 * 60.00442 * 3 2 1 29 29 H 1.09001 * 109.47376 * 300.00024 * 3 2 1 30 30 H 1.09006 * 109.46698 * 304.99419 * 4 3 2 31 31 H 1.09004 * 109.47289 * 185.00264 * 4 3 2 32 32 H 0.96997 * 120.00117 * 185.05514 * 9 8 6 33 33 H 1.09004 * 109.46742 * 62.06978 * 16 14 5 34 34 H 1.08997 * 109.47098 * 302.07304 * 16 14 5 35 35 H 1.08004 * 120.02469 * 359.95879 * 19 18 17 36 36 H 1.08001 * 119.97306 * 180.02562 * 20 19 18 37 37 H 1.08001 * 119.94907 * 180.27341 * 21 20 19 38 38 H 1.08999 * 109.47601 * 269.72512 * 23 22 21 39 39 H 1.09001 * 109.47443 * 29.72689 * 23 22 21 40 40 H 1.09003 * 109.47129 * 149.72544 * 23 22 21 41 41 H 1.08002 * 120.02605 * 180.23176 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0969 -0.7986 -1.3369 7 1 3.8312 -1.3089 -2.2509 8 6 4.5617 -1.5235 -0.2463 9 7 5.2724 -0.9272 0.6844 10 14 4.1763 -3.3457 -0.1033 11 1 5.2472 -4.1317 -0.7668 12 1 4.1003 -3.7244 1.3306 13 1 2.8749 -3.6294 -0.7598 14 6 4.2616 1.3337 -2.3217 15 8 4.0645 2.5298 -2.2784 16 6 4.8263 0.7080 -3.5710 17 8 5.0883 1.7272 -4.5377 18 6 5.5659 1.3246 -5.7447 19 6 5.6704 -0.0283 -6.0346 20 6 6.1555 -0.4348 -7.2622 21 6 6.5322 0.5052 -8.2039 22 6 6.4341 1.8537 -7.9156 23 6 6.8504 2.8753 -8.9421 24 6 5.9493 2.2655 -6.6890 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5682 0.8411 31 1 3.9786 2.1765 0.0890 32 1 5.6586 -1.4464 1.4070 33 1 4.1072 -0.0029 -3.9782 34 1 5.7538 0.1887 -3.3299 35 1 5.3728 -0.7628 -5.3008 36 1 6.2367 -1.4877 -7.4885 37 1 6.9072 0.1854 -9.1649 38 1 7.9055 3.1144 -8.8098 39 1 6.6920 2.4712 -9.9420 40 1 6.2546 3.7796 -8.8172 41 1 5.8693 3.3191 -6.4655 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457180684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:55 Heat of formation + Delta-G solvation = -86.932838 kcal Electronic energy + Delta-G solvation = -23501.247831 eV Core-core repulsion = 19961.177606 eV Total energy + Delta-G solvation = -3540.070224 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.91619 -38.65518 -37.30800 -36.69022 -34.68974 -32.37970 -31.65060 -30.47306 -29.49647 -27.26878 -26.64022 -25.75658 -24.66300 -22.31847 -22.14870 -20.79633 -19.16611 -17.58669 -17.21532 -16.09535 -15.80708 -15.69654 -15.43788 -15.24793 -15.12851 -14.38541 -14.36218 -14.12839 -13.93104 -13.69023 -13.10872 -13.04067 -13.00575 -12.27509 -12.02792 -11.92665 -11.87090 -11.45063 -11.40311 -11.19777 -11.11466 -11.01694 -10.75420 -10.63234 -10.39505 -10.38424 -10.09025 -9.19499 -8.98458 -8.63906 -8.48310 -7.90481 -7.55894 -6.40618 -4.07818 1.47822 1.65471 3.10886 3.22943 3.28332 3.42103 3.77751 3.93373 4.13557 4.50967 4.80214 4.92378 4.97202 5.05671 5.24398 5.33233 5.49239 5.56817 5.58328 5.65941 5.72455 5.79186 5.80463 5.87293 5.94462 5.99084 6.02811 6.07724 6.21729 6.25687 6.31441 6.54378 6.62117 6.65712 6.70938 6.98360 7.21812 7.41287 7.76015 7.80477 7.95744 8.30737 9.05446 9.41423 9.83405 10.62162 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017441 B = 0.004127 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.043631 B = 6783.130383 C = 7599.668767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.053 3.947 4 C 0.115 3.885 5 N -0.422 5.422 6 C -0.336 4.336 7 H 0.086 0.914 8 C 0.056 3.944 9 N -0.860 5.860 10 Si 0.917 3.083 11 H -0.279 1.279 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.469 3.531 15 O -0.592 6.592 16 C 0.063 3.937 17 O -0.294 6.294 18 C 0.145 3.855 19 C -0.217 4.217 20 C -0.076 4.076 21 C -0.171 4.171 22 C -0.053 4.053 23 C -0.112 4.112 24 C -0.158 4.158 25 H 0.032 0.968 26 H 0.077 0.923 27 H 0.030 0.970 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.271 0.729 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 0.273 -10.097 10.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.281 6.281 3 C -0.025 4.025 4 C -0.008 4.008 5 N -0.142 5.142 6 C -0.463 4.463 7 H 0.103 0.897 8 C -0.150 4.150 9 N -0.496 5.496 10 Si 0.743 3.257 11 H -0.205 1.205 12 H -0.207 1.207 13 H -0.191 1.191 14 C 0.257 3.743 15 O -0.477 6.477 16 C -0.015 4.015 17 O -0.206 6.206 18 C 0.099 3.901 19 C -0.236 4.236 20 C -0.095 4.095 21 C -0.189 4.189 22 C -0.053 4.053 23 C -0.169 4.169 24 C -0.177 4.177 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.134 0.866 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.735 0.852 -9.740 9.804 hybrid contribution -0.458 -1.159 0.281 1.278 sum -1.193 -0.307 -9.459 9.539 Atomic orbital electron populations 1.22647 0.83487 1.01708 0.98839 1.88145 1.17302 1.27621 1.95030 1.23013 0.96390 0.84393 0.98695 1.21513 0.89507 0.99052 0.90735 1.43192 1.55900 1.06149 1.08915 1.19257 1.45131 0.80407 1.01544 0.89674 1.25274 0.93834 1.00061 0.95871 1.69822 1.28796 1.37030 1.13936 0.86103 0.79223 0.82505 0.77842 1.20544 1.20731 1.19142 1.19827 0.82243 0.86508 0.85741 1.90559 1.58144 1.15121 1.83864 1.22408 1.01828 0.89401 0.87848 1.86143 1.78265 1.35716 1.20435 1.19152 0.92578 0.92600 0.85816 1.21398 1.07560 0.95011 0.99584 1.20894 0.96494 0.99331 0.92742 1.20837 1.05615 0.92412 1.00020 1.19636 0.97033 0.94523 0.94132 1.20774 1.01627 0.97510 0.96948 1.20291 1.05249 0.99240 0.92938 0.94980 0.90462 0.95174 0.94210 0.94073 0.86617 0.91004 0.91840 0.90441 0.89258 0.85028 0.86032 0.86411 0.91115 0.91586 0.91456 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.72 10.18 -35.23 -0.36 -8.07 16 3 C 0.05 1.10 6.28 37.16 0.23 1.33 16 4 C 0.12 2.74 5.39 -4.04 -0.02 2.72 16 5 N -0.42 -10.56 2.50 -114.81 -0.29 -10.85 16 6 C -0.34 -8.35 8.08 -14.93 -0.12 -8.47 16 7 H 0.09 2.02 7.15 -52.49 -0.38 1.65 16 8 C 0.06 1.40 4.95 -17.46 -0.09 1.31 16 9 N -0.86 -22.21 11.44 55.50 0.63 -21.58 16 10 Si 0.92 19.52 29.61 -169.99 -5.03 14.49 16 11 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 13 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 14 C 0.47 11.69 7.70 -10.98 -0.08 11.61 16 15 O -0.59 -16.16 16.14 -14.35 -0.23 -16.39 16 16 C 0.06 1.33 3.99 36.01 0.14 1.47 16 17 O -0.29 -6.20 9.67 -39.33 -0.38 -6.58 16 18 C 0.15 2.58 6.68 -39.22 -0.26 2.32 16 19 C -0.22 -3.42 9.06 -39.43 -0.36 -3.78 16 20 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 21 C -0.17 -2.13 9.70 -39.56 -0.38 -2.51 16 22 C -0.05 -0.69 5.88 -104.65 -0.62 -1.31 16 23 C -0.11 -1.07 10.01 36.00 0.36 -0.71 16 24 C -0.16 -2.48 9.64 -39.43 -0.38 -2.86 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.12 2.92 5.49 -51.93 -0.28 2.63 16 31 H 0.07 1.70 7.50 -51.93 -0.39 1.32 16 32 H 0.27 6.63 8.32 -40.82 -0.34 6.29 16 33 H 0.08 1.50 6.80 -51.93 -0.35 1.15 16 34 H 0.09 1.83 7.96 -51.93 -0.41 1.42 16 35 H 0.13 2.00 6.30 -52.48 -0.33 1.67 16 36 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 40 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 41 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -30.35 347.97 -7.20 -37.54 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -5.93 Total: 4.87 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -0.86 Total: 1.32 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.35 Total: -32.43 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.97 Total: -31.05 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.35 -7.20 -37.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457180684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.388 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds