Wall clock time and date at job start Tue Mar 31 2020 06:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99897 * 2 1 4 4 C 1.53002 * 109.46975 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47436 * 65.00079 * 4 3 2 6 6 C 1.37098 * 119.99765 * 270.00036 * 5 4 3 7 7 H 1.08002 * 120.00100 * 143.05112 * 6 5 4 8 8 C 1.38953 * 120.00322 * 323.05356 * 6 5 4 9 9 N 1.31417 * 119.99935 * 338.30023 * 8 6 5 10 10 Si 1.86799 * 120.00212 * 158.30279 * 8 6 5 11 11 H 1.48494 * 109.47191 * 89.99889 * 10 8 6 12 12 H 1.48500 * 109.46823 * 209.99839 * 10 8 6 13 13 H 1.48497 * 109.46996 * 329.99897 * 10 8 6 14 14 C 1.34772 * 120.00135 * 90.00099 * 5 4 3 15 15 O 1.21292 * 120.00283 * 354.78043 * 14 5 4 16 16 C 1.50707 * 119.99970 * 174.77652 * 14 5 4 17 17 O 1.42898 * 109.47114 * 182.06772 * 16 14 5 18 18 C 1.35901 * 116.99940 * 181.94923 * 17 16 14 19 19 C 1.38754 * 120.05620 * 5.50119 * 18 17 16 20 20 C 1.38119 * 119.94361 * 179.97438 * 19 18 17 21 21 C 1.38287 * 120.05632 * 359.75230 * 20 19 18 22 22 C 1.38248 * 120.11277 * 0.50365 * 21 20 19 23 23 C 1.50691 * 119.97392 * 179.76625 * 22 21 20 24 24 C 1.38169 * 120.05091 * 359.49612 * 22 21 20 25 25 H 1.09005 * 109.46985 * 59.99823 * 1 2 3 26 26 H 1.08995 * 109.47224 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46827 * 299.99792 * 1 2 3 28 28 H 1.08999 * 109.47465 * 60.00442 * 3 2 1 29 29 H 1.09001 * 109.47376 * 300.00024 * 3 2 1 30 30 H 1.09006 * 109.46698 * 304.99419 * 4 3 2 31 31 H 1.09004 * 109.47289 * 185.00264 * 4 3 2 32 32 H 0.96997 * 120.00117 * 185.05514 * 9 8 6 33 33 H 1.09004 * 109.46742 * 62.06978 * 16 14 5 34 34 H 1.08997 * 109.47098 * 302.07304 * 16 14 5 35 35 H 1.08004 * 120.02469 * 359.95879 * 19 18 17 36 36 H 1.08001 * 119.97306 * 180.02562 * 20 19 18 37 37 H 1.08001 * 119.94907 * 180.27341 * 21 20 19 38 38 H 1.08999 * 109.47601 * 269.72512 * 23 22 21 39 39 H 1.09001 * 109.47443 * 29.72689 * 23 22 21 40 40 H 1.09003 * 109.47129 * 149.72544 * 23 22 21 41 41 H 1.08002 * 120.02605 * 180.23176 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0969 -0.7986 -1.3369 7 1 3.8312 -1.3089 -2.2509 8 6 4.5617 -1.5235 -0.2463 9 7 5.2724 -0.9272 0.6844 10 14 4.1763 -3.3457 -0.1033 11 1 5.2472 -4.1317 -0.7668 12 1 4.1003 -3.7244 1.3306 13 1 2.8749 -3.6294 -0.7598 14 6 4.2616 1.3337 -2.3217 15 8 4.0645 2.5298 -2.2784 16 6 4.8263 0.7080 -3.5710 17 8 5.0883 1.7272 -4.5377 18 6 5.5659 1.3246 -5.7447 19 6 5.6704 -0.0283 -6.0346 20 6 6.1555 -0.4348 -7.2622 21 6 6.5322 0.5052 -8.2039 22 6 6.4341 1.8537 -7.9156 23 6 6.8504 2.8753 -8.9421 24 6 5.9493 2.2655 -6.6890 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5682 0.8411 31 1 3.9786 2.1765 0.0890 32 1 5.6586 -1.4464 1.4070 33 1 4.1072 -0.0029 -3.9782 34 1 5.7538 0.1887 -3.3299 35 1 5.3728 -0.7628 -5.3008 36 1 6.2367 -1.4877 -7.4885 37 1 6.9072 0.1854 -9.1649 38 1 7.9055 3.1144 -8.8098 39 1 6.6920 2.4712 -9.9420 40 1 6.2546 3.7796 -8.8172 41 1 5.8693 3.3191 -6.4655 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457180684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:55 Heat of formation + Delta-G solvation = -103.955972 kcal Electronic energy + Delta-G solvation = -23501.986009 eV Core-core repulsion = 19961.177606 eV Total energy + Delta-G solvation = -3540.808403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.31807 -40.36305 -38.75244 -38.21686 -36.61457 -33.58255 -33.38426 -31.95504 -30.98147 -28.74878 -27.68998 -27.29288 -26.45572 -23.81767 -23.44810 -22.08966 -21.03670 -19.07749 -18.88934 -17.74076 -17.43505 -16.98733 -16.93099 -16.84276 -16.66819 -16.06016 -15.98434 -15.67159 -15.08668 -14.97125 -14.63808 -14.36908 -14.16088 -13.70978 -13.51299 -13.38853 -13.07009 -12.89039 -12.87308 -12.81563 -12.54751 -12.50425 -12.40978 -12.10177 -11.89348 -11.83755 -11.71137 -11.06911 -10.56656 -10.39991 -9.72544 -9.50944 -9.13287 -8.30773 -6.03967 0.38001 0.50507 1.40433 1.51064 1.61695 1.81456 1.95553 2.37387 2.81697 2.96832 3.07605 3.19182 3.86949 3.94236 4.07197 4.12768 4.22223 4.26835 4.31058 4.41121 4.44810 4.48312 4.51655 4.57892 4.59200 4.59317 4.75655 4.84339 4.87168 4.89912 5.03140 5.27244 5.30554 5.41987 5.48075 5.52271 5.65733 5.89712 5.91770 6.35474 6.39550 6.47958 7.11886 7.48322 7.90764 8.73018 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017441 B = 0.004127 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.043631 B = 6783.130383 C = 7599.668767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.393 6.393 3 C 0.065 3.935 4 C 0.111 3.889 5 N -0.427 5.427 6 C -0.349 4.349 7 H 0.093 0.907 8 C 0.020 3.980 9 N -0.889 5.889 10 Si 0.980 3.020 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.264 1.264 14 C 0.451 3.549 15 O -0.626 6.626 16 C 0.080 3.920 17 O -0.324 6.324 18 C 0.107 3.893 19 C -0.230 4.230 20 C -0.076 4.076 21 C -0.162 4.162 22 C -0.051 4.051 23 C -0.111 4.111 24 C -0.176 4.176 25 H 0.038 0.962 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.274 0.726 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.130 0.870 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 -1.451 -12.076 12.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C -0.013 4.013 4 C -0.012 4.012 5 N -0.145 5.145 6 C -0.476 4.476 7 H 0.111 0.889 8 C -0.184 4.184 9 N -0.526 5.526 10 Si 0.804 3.196 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.189 1.189 14 C 0.240 3.760 15 O -0.515 6.515 16 C 0.002 3.998 17 O -0.237 6.237 18 C 0.061 3.939 19 C -0.248 4.248 20 C -0.094 4.094 21 C -0.180 4.180 22 C -0.052 4.052 23 C -0.167 4.167 24 C -0.195 4.195 25 H 0.056 0.944 26 H 0.112 0.888 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.148 0.852 36 H 0.170 0.830 37 H 0.173 0.827 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.822 -0.882 -11.732 11.794 hybrid contribution -0.405 -0.600 0.816 1.090 sum -1.227 -1.481 -10.916 11.085 Atomic orbital electron populations 1.22892 0.80735 1.03342 1.00229 1.88072 1.20342 1.27531 1.95293 1.22781 0.94274 0.84772 0.99462 1.21499 0.91825 0.97900 0.89993 1.43423 1.55403 1.06513 1.09175 1.19550 1.45429 0.80388 1.02202 0.88893 1.26037 0.93190 1.03930 0.95236 1.69919 1.29523 1.38647 1.14490 0.85136 0.79183 0.77703 0.77576 1.19395 1.20884 1.18871 1.20498 0.82161 0.86314 0.87023 1.90510 1.59693 1.16523 1.84726 1.22111 1.01738 0.89187 0.86736 1.86077 1.79602 1.36162 1.21848 1.19522 0.94952 0.94236 0.85149 1.21513 1.08377 0.94022 1.00927 1.21287 0.95185 1.01242 0.91643 1.21322 1.03733 0.91822 1.01106 1.20082 0.95490 0.96022 0.93568 1.20860 1.02274 0.96717 0.96863 1.20518 1.06158 0.98905 0.93921 0.94373 0.88765 0.92926 0.91298 0.95255 0.88066 0.92226 0.91610 0.89073 0.89264 0.85233 0.83025 0.82742 0.89867 0.89243 0.91232 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 11.01 113.37 1.25 1.99 16 2 O -0.39 -16.50 10.18 -148.98 -1.52 -18.02 16 3 C 0.06 2.72 6.28 71.98 0.45 3.17 16 4 C 0.11 5.46 5.39 86.38 0.47 5.92 16 5 N -0.43 -21.99 2.50 -635.53 -1.59 -23.58 16 6 C -0.35 -17.49 8.08 84.04 0.68 -16.81 16 7 H 0.09 4.42 7.15 -2.91 -0.02 4.40 16 8 C 0.02 1.00 4.95 84.93 0.42 1.42 16 9 N -0.89 -46.51 11.44 21.66 0.25 -46.26 16 10 Si 0.98 39.48 29.61 68.60 2.03 41.51 16 11 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 12 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 13 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 14 C 0.45 23.45 7.70 87.66 0.67 24.13 16 15 O -0.63 -35.94 16.14 15.96 0.26 -35.68 16 16 C 0.08 3.51 3.99 71.24 0.28 3.80 16 17 O -0.32 -14.36 9.67 -73.40 -0.71 -15.07 16 18 C 0.11 3.89 6.68 22.51 0.15 4.04 16 19 C -0.23 -7.16 9.06 22.36 0.20 -6.96 16 20 C -0.08 -1.83 10.04 22.25 0.22 -1.60 16 21 C -0.16 -3.49 9.70 22.28 0.22 -3.27 16 22 C -0.05 -1.24 5.88 -19.88 -0.12 -1.35 16 23 C -0.11 -1.78 10.01 71.23 0.71 -1.07 16 24 C -0.18 -5.56 9.64 22.37 0.22 -5.35 16 25 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.10 5.27 5.49 -2.38 -0.01 5.25 16 31 H 0.06 2.98 7.50 -2.39 -0.02 2.97 16 32 H 0.27 13.50 8.32 -92.71 -0.77 12.73 16 33 H 0.09 3.64 6.80 -2.39 -0.02 3.63 16 34 H 0.09 3.83 7.96 -2.39 -0.02 3.81 16 35 H 0.13 3.96 6.30 -2.91 -0.02 3.94 16 36 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 1.05 8.08 -2.39 -0.02 1.03 16 40 H 0.07 1.10 8.08 -2.39 -0.02 1.08 16 41 H 0.12 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -67.43 347.97 5.57 -61.86 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 1.02 Total: 27.20 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.83 Total: 8.04 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -1.34 Total: -69.85 kcal Atomic # 8 Polarization: -66.80 SS G_CDS: -1.97 Total: -68.77 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -67.43 5.57 -61.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457180684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.096 kcal (2) G-P(sol) polarization free energy of solvation -67.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds