Wall clock time and date at job start Tue Mar 31 2020 06:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00543 * 2 1 4 4 C 1.52995 * 109.47801 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47171 * 65.00040 * 4 3 2 6 6 C 1.37097 * 119.99895 * 264.47902 * 5 4 3 7 7 H 1.08001 * 120.00187 * 138.27100 * 6 5 4 8 8 C 1.38952 * 119.99800 * 318.25366 * 6 5 4 9 9 N 1.31410 * 120.00346 * 341.90048 * 8 6 5 10 10 Si 1.86798 * 119.99786 * 161.89067 * 8 6 5 11 11 H 1.48505 * 109.47083 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47293 * 120.00715 * 10 8 6 13 13 H 1.48496 * 109.47366 * 240.00639 * 10 8 6 14 14 C 1.34777 * 119.99704 * 84.47097 * 5 4 3 15 15 O 1.21283 * 120.00420 * 359.97438 * 14 5 4 16 16 C 1.50701 * 119.99749 * 180.02562 * 14 5 4 17 17 O 1.42898 * 109.47194 * 180.02562 * 16 14 5 18 18 C 1.35903 * 117.00185 * 179.97438 * 17 16 14 19 19 C 1.38734 * 120.05404 * 359.72180 * 18 17 16 20 20 C 1.38147 * 119.94248 * 179.76762 * 19 18 17 21 21 C 1.38269 * 120.05477 * 0.51108 * 20 19 18 22 22 C 1.50694 * 119.94155 * 179.76867 * 21 20 19 23 23 C 1.38265 * 120.10979 * 359.74080 * 21 20 19 24 24 C 1.38143 * 120.05766 * 0.02562 * 23 21 20 25 25 H 1.08995 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46800 * 299.99833 * 1 2 3 27 27 H 1.09005 * 109.46761 * 59.99715 * 1 2 3 28 28 H 1.09004 * 109.46857 * 59.99794 * 3 2 1 29 29 H 1.09003 * 109.47000 * 300.00889 * 3 2 1 30 30 H 1.09000 * 109.47230 * 305.00480 * 4 3 2 31 31 H 1.08992 * 109.47379 * 184.99982 * 4 3 2 32 32 H 0.97000 * 119.99857 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47401 * 59.99732 * 16 14 5 34 34 H 1.09006 * 109.46843 * 299.99833 * 16 14 5 35 35 H 1.08001 * 120.02585 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.97218 * 180.26024 * 20 19 18 37 37 H 1.09002 * 109.46799 * 269.97300 * 22 21 20 38 38 H 1.08998 * 109.47718 * 29.97734 * 22 21 20 39 39 H 1.09006 * 109.46763 * 149.98027 * 22 21 20 40 40 H 1.07996 * 119.97243 * 179.97438 * 23 21 20 41 41 H 1.08003 * 120.03073 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5640 -1.2509 6 6 4.2071 -0.7865 -1.3023 7 1 3.8794 -1.3581 -2.1581 8 6 4.8625 -1.4199 -0.2535 9 7 5.5677 -0.7148 0.6023 10 14 4.7410 -3.2739 -0.0598 11 1 3.8941 -3.8305 -1.1454 12 1 6.0990 -3.8698 -0.1371 13 1 4.1335 -3.5953 1.2565 14 6 4.1561 1.3206 -2.3517 15 8 3.9517 2.5153 -2.3064 16 6 4.6094 0.6821 -3.6392 17 8 4.7263 1.6833 -4.6521 18 6 5.1287 1.2715 -5.8832 19 6 5.4108 -0.0678 -6.1101 20 6 5.8150 -0.4846 -7.3636 21 6 5.9486 0.4334 -8.3889 22 6 6.3947 -0.0232 -9.7540 23 6 5.6730 1.7695 -8.1640 24 6 5.2639 2.1906 -6.9135 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8508 0.5685 0.8426 31 1 3.9785 2.1765 0.0902 32 1 6.0249 -1.1570 1.3346 33 1 3.8805 -0.0664 -3.9500 34 1 5.5777 0.2050 -3.4870 35 1 5.3106 -0.7845 -5.3084 36 1 6.0307 -1.5277 -7.5418 37 1 7.4820 0.0237 -9.8154 38 1 6.0653 -1.0490 -9.9197 39 1 5.9595 0.6255 -10.5143 40 1 5.7785 2.4847 -8.9663 41 1 5.0491 3.2345 -6.7382 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457184477.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:57 Heat of formation + Delta-G solvation = -89.444636 kcal Electronic energy + Delta-G solvation = -23466.525722 eV Core-core repulsion = 19926.346577 eV Total energy + Delta-G solvation = -3540.179144 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.91734 -38.67026 -37.34027 -36.72708 -34.69538 -31.89183 -31.66846 -30.87365 -29.80852 -27.57927 -25.97311 -25.66495 -24.66865 -22.75813 -21.85847 -20.89697 -19.19399 -17.88491 -17.25584 -16.09219 -15.76053 -15.47147 -15.26534 -15.23151 -15.11911 -14.44171 -14.37956 -14.06965 -13.94487 -13.67725 -13.30798 -13.22978 -12.97583 -12.32036 -12.05775 -11.93827 -11.84554 -11.44872 -11.38642 -11.22914 -11.13486 -11.05371 -10.77953 -10.58990 -10.37320 -10.34511 -10.09071 -9.19008 -9.01478 -8.84159 -8.49538 -7.78296 -7.54554 -6.41078 -4.14644 1.50798 1.61049 3.11443 3.22811 3.25873 3.43487 3.77478 3.92728 4.13393 4.47226 4.81959 4.93892 4.96651 5.01043 5.14393 5.33169 5.49704 5.57626 5.62663 5.64057 5.69778 5.78324 5.84755 5.86876 5.93822 5.97327 6.00830 6.05354 6.19600 6.25260 6.29121 6.46321 6.60021 6.65352 6.73080 6.98724 7.17692 7.38834 7.76673 7.79763 7.94653 8.29544 9.04176 9.40050 9.83131 10.62707 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015842 B = 0.004215 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.022989 B = 6641.740680 C = 7532.441002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.050 3.950 4 C 0.124 3.876 5 N -0.424 5.424 6 C -0.336 4.336 7 H 0.085 0.915 8 C 0.053 3.947 9 N -0.860 5.860 10 Si 0.916 3.084 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.278 1.278 14 C 0.475 3.525 15 O -0.590 6.590 16 C 0.062 3.938 17 O -0.294 6.294 18 C 0.137 3.863 19 C -0.208 4.208 20 C -0.079 4.079 21 C -0.140 4.140 22 C -0.105 4.105 23 C -0.083 4.083 24 C -0.154 4.154 25 H 0.078 0.922 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.270 0.730 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.133 0.867 36 H 0.121 0.879 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.124 0.876 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 -0.994 -10.462 10.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.028 4.028 4 C 0.001 3.999 5 N -0.144 5.144 6 C -0.464 4.464 7 H 0.103 0.897 8 C -0.154 4.154 9 N -0.496 5.496 10 Si 0.743 3.257 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.204 1.204 14 C 0.263 3.737 15 O -0.474 6.474 16 C -0.016 4.016 17 O -0.206 6.206 18 C 0.091 3.909 19 C -0.227 4.227 20 C -0.097 4.097 21 C -0.141 4.141 22 C -0.162 4.162 23 C -0.101 4.101 24 C -0.172 4.172 25 H 0.096 0.904 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.126 0.874 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.151 0.849 36 H 0.139 0.861 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.142 0.858 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.928 -0.412 -10.155 10.345 hybrid contribution -0.289 -1.082 0.385 1.184 sum -2.217 -1.494 -9.771 10.130 Atomic orbital electron populations 1.22650 0.83328 1.01761 0.98911 1.88117 1.17470 1.27767 1.95071 1.23059 0.96446 0.84348 0.98900 1.21370 0.89167 0.99014 0.90386 1.43143 1.56782 1.07283 1.07190 1.19303 1.37224 0.81981 1.07865 0.89709 1.25356 0.93444 0.99992 0.96595 1.69929 1.27256 1.36758 1.15672 0.86056 0.77860 0.82974 0.78822 1.19166 1.20901 1.20407 1.19863 0.81644 0.86470 0.85721 1.90559 1.56290 1.15011 1.85584 1.22398 1.02745 0.89785 0.86624 1.86143 1.81250 1.36552 1.16641 1.19186 0.93581 0.92617 0.85563 1.21406 1.06934 0.95288 0.99044 1.20798 0.97833 0.99113 0.92001 1.19743 1.04359 0.93711 0.96238 1.20665 1.00989 1.01236 0.93269 1.20758 0.98266 0.95151 0.95941 1.20426 1.05694 0.99501 0.91620 0.90393 0.95100 0.94952 0.94097 0.93880 0.87407 0.91005 0.91999 0.90357 0.89265 0.84933 0.86092 0.91772 0.91985 0.92009 0.85826 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.37 -7.67 10.44 -35.23 -0.37 -8.04 16 3 C 0.05 1.04 6.24 37.15 0.23 1.27 16 4 C 0.12 2.94 5.27 -4.04 -0.02 2.92 16 5 N -0.42 -10.61 2.45 -114.82 -0.28 -10.89 16 6 C -0.34 -8.36 8.29 -14.93 -0.12 -8.48 16 7 H 0.09 2.03 7.21 -52.49 -0.38 1.65 16 8 C 0.05 1.31 4.95 -17.47 -0.09 1.23 16 9 N -0.86 -22.37 11.66 55.50 0.65 -21.73 16 10 Si 0.92 19.45 29.59 -169.99 -5.03 14.42 16 11 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 14 C 0.48 11.84 7.67 -10.98 -0.08 11.75 16 15 O -0.59 -16.06 16.17 -14.36 -0.23 -16.29 16 16 C 0.06 1.31 3.95 36.01 0.14 1.45 16 17 O -0.29 -6.17 9.67 -39.35 -0.38 -6.56 16 18 C 0.14 2.42 6.69 -39.22 -0.26 2.16 16 19 C -0.21 -3.27 9.04 -39.43 -0.36 -3.62 16 20 C -0.08 -1.06 9.69 -39.60 -0.38 -1.45 16 21 C -0.14 -1.74 5.88 -104.60 -0.62 -2.36 16 22 C -0.10 -0.95 10.01 36.00 0.36 -0.59 16 23 C -0.08 -1.06 9.69 -39.61 -0.38 -1.45 16 24 C -0.15 -2.36 9.99 -39.43 -0.39 -2.75 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.11 2.71 5.81 -51.93 -0.30 2.40 16 31 H 0.07 1.71 7.59 -51.93 -0.39 1.32 16 32 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 33 H 0.08 1.52 7.24 -51.93 -0.38 1.14 16 34 H 0.09 1.82 7.60 -51.93 -0.39 1.43 16 35 H 0.13 2.02 6.30 -52.49 -0.33 1.69 16 36 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 39 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 40 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.13 1.87 8.06 -52.48 -0.42 1.44 16 LS Contribution 348.93 15.07 5.26 5.26 Total: -1.00 -30.38 348.93 -7.21 -37.59 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.96 Total: 4.56 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.86 Total: 1.67 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.37 Total: -32.61 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.98 Total: -30.89 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.38 -7.21 -37.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457184477.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.859 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds