Wall clock time and date at job start Tue Mar 31 2020 06:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00543 * 2 1 4 4 C 1.52995 * 109.47801 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47171 * 65.00040 * 4 3 2 6 6 C 1.37097 * 119.99895 * 264.47902 * 5 4 3 7 7 H 1.08001 * 120.00187 * 138.27100 * 6 5 4 8 8 C 1.38952 * 119.99800 * 318.25366 * 6 5 4 9 9 N 1.31410 * 120.00346 * 341.90048 * 8 6 5 10 10 Si 1.86798 * 119.99786 * 161.89067 * 8 6 5 11 11 H 1.48505 * 109.47083 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47293 * 120.00715 * 10 8 6 13 13 H 1.48496 * 109.47366 * 240.00639 * 10 8 6 14 14 C 1.34777 * 119.99704 * 84.47097 * 5 4 3 15 15 O 1.21283 * 120.00420 * 359.97438 * 14 5 4 16 16 C 1.50701 * 119.99749 * 180.02562 * 14 5 4 17 17 O 1.42898 * 109.47194 * 180.02562 * 16 14 5 18 18 C 1.35903 * 117.00185 * 179.97438 * 17 16 14 19 19 C 1.38734 * 120.05404 * 359.72180 * 18 17 16 20 20 C 1.38147 * 119.94248 * 179.76762 * 19 18 17 21 21 C 1.38269 * 120.05477 * 0.51108 * 20 19 18 22 22 C 1.50694 * 119.94155 * 179.76867 * 21 20 19 23 23 C 1.38265 * 120.10979 * 359.74080 * 21 20 19 24 24 C 1.38143 * 120.05766 * 0.02562 * 23 21 20 25 25 H 1.08995 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46800 * 299.99833 * 1 2 3 27 27 H 1.09005 * 109.46761 * 59.99715 * 1 2 3 28 28 H 1.09004 * 109.46857 * 59.99794 * 3 2 1 29 29 H 1.09003 * 109.47000 * 300.00889 * 3 2 1 30 30 H 1.09000 * 109.47230 * 305.00480 * 4 3 2 31 31 H 1.08992 * 109.47379 * 184.99982 * 4 3 2 32 32 H 0.97000 * 119.99857 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47401 * 59.99732 * 16 14 5 34 34 H 1.09006 * 109.46843 * 299.99833 * 16 14 5 35 35 H 1.08001 * 120.02585 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.97218 * 180.26024 * 20 19 18 37 37 H 1.09002 * 109.46799 * 269.97300 * 22 21 20 38 38 H 1.08998 * 109.47718 * 29.97734 * 22 21 20 39 39 H 1.09006 * 109.46763 * 149.98027 * 22 21 20 40 40 H 1.07996 * 119.97243 * 179.97438 * 23 21 20 41 41 H 1.08003 * 120.03073 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5640 -1.2509 6 6 4.2071 -0.7865 -1.3023 7 1 3.8794 -1.3581 -2.1581 8 6 4.8625 -1.4199 -0.2535 9 7 5.5677 -0.7148 0.6023 10 14 4.7410 -3.2739 -0.0598 11 1 3.8941 -3.8305 -1.1454 12 1 6.0990 -3.8698 -0.1371 13 1 4.1335 -3.5953 1.2565 14 6 4.1561 1.3206 -2.3517 15 8 3.9517 2.5153 -2.3064 16 6 4.6094 0.6821 -3.6392 17 8 4.7263 1.6833 -4.6521 18 6 5.1287 1.2715 -5.8832 19 6 5.4108 -0.0678 -6.1101 20 6 5.8150 -0.4846 -7.3636 21 6 5.9486 0.4334 -8.3889 22 6 6.3947 -0.0232 -9.7540 23 6 5.6730 1.7695 -8.1640 24 6 5.2639 2.1906 -6.9135 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8508 0.5685 0.8426 31 1 3.9785 2.1765 0.0902 32 1 6.0249 -1.1570 1.3346 33 1 3.8805 -0.0664 -3.9500 34 1 5.5777 0.2050 -3.4870 35 1 5.3106 -0.7845 -5.3084 36 1 6.0307 -1.5277 -7.5418 37 1 7.4820 0.0237 -9.8154 38 1 6.0653 -1.0490 -9.9197 39 1 5.9595 0.6255 -10.5143 40 1 5.7785 2.4847 -8.9663 41 1 5.0491 3.2345 -6.7382 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457184477.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:56 Heat of formation + Delta-G solvation = -106.494254 kcal Electronic energy + Delta-G solvation = -23467.265048 eV Core-core repulsion = 19926.346577 eV Total energy + Delta-G solvation = -3540.918471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31534 -40.36954 -38.76500 -38.24037 -36.62036 -33.59904 -32.96300 -32.00397 -31.48470 -29.09601 -27.30393 -26.94430 -26.42690 -24.10941 -23.33993 -22.08229 -21.08559 -19.27325 -19.03096 -17.78661 -17.43995 -16.98316 -16.84409 -16.79911 -16.24001 -16.09647 -15.98189 -15.61208 -15.14312 -14.97603 -14.63855 -14.38960 -14.34821 -13.78522 -13.55368 -13.40969 -13.09394 -12.92156 -12.86158 -12.78951 -12.58447 -12.51196 -12.38133 -12.04102 -11.84182 -11.73766 -11.72076 -11.06973 -10.58624 -10.40959 -9.94365 -9.49915 -8.97699 -8.31619 -6.11323 0.40530 0.47433 1.41450 1.50213 1.61475 1.84610 1.93129 2.37475 2.81244 2.95084 3.05921 3.19105 3.85060 3.97961 4.05907 4.10687 4.17091 4.23693 4.30078 4.43243 4.44974 4.48616 4.50830 4.57861 4.59204 4.68055 4.75957 4.84377 4.87541 4.94200 5.12663 5.21053 5.26604 5.40487 5.45483 5.45818 5.70228 5.91413 5.94447 6.34090 6.37224 6.47702 7.10377 7.46986 7.90464 8.73310 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015842 B = 0.004215 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.022989 B = 6641.740680 C = 7532.441002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.063 3.937 4 C 0.121 3.879 5 N -0.430 5.430 6 C -0.348 4.348 7 H 0.093 0.907 8 C 0.014 3.986 9 N -0.892 5.892 10 Si 0.982 3.018 11 H -0.258 1.258 12 H -0.278 1.278 13 H -0.280 1.280 14 C 0.458 3.542 15 O -0.624 6.624 16 C 0.079 3.921 17 O -0.323 6.323 18 C 0.096 3.904 19 C -0.217 4.217 20 C -0.084 4.084 21 C -0.132 4.132 22 C -0.104 4.104 23 C -0.080 4.080 24 C -0.166 4.166 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.273 0.727 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.130 0.870 36 H 0.147 0.853 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.157 0.843 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.229 -2.766 -12.467 12.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.015 4.015 4 C -0.003 4.003 5 N -0.148 5.148 6 C -0.475 4.475 7 H 0.111 0.889 8 C -0.189 4.189 9 N -0.529 5.529 10 Si 0.806 3.194 11 H -0.181 1.181 12 H -0.204 1.204 13 H -0.206 1.206 14 C 0.247 3.753 15 O -0.511 6.511 16 C 0.002 3.998 17 O -0.236 6.236 18 C 0.051 3.949 19 C -0.236 4.236 20 C -0.102 4.102 21 C -0.132 4.132 22 C -0.160 4.160 23 C -0.098 4.098 24 C -0.184 4.184 25 H 0.114 0.886 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.148 0.852 36 H 0.165 0.835 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.174 0.826 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.161 -2.197 -12.177 12.561 hybrid contribution -0.203 -0.508 0.912 1.064 sum -2.364 -2.705 -11.265 11.824 Atomic orbital electron populations 1.22902 0.80537 1.03478 1.00250 1.88046 1.20540 1.27603 1.95327 1.22814 0.94241 0.84769 0.99652 1.21345 0.91546 0.97754 0.89610 1.43377 1.56334 1.07611 1.07513 1.19595 1.37487 0.81972 1.08453 0.88940 1.26151 0.92735 1.04082 0.95979 1.70026 1.27995 1.38588 1.16259 0.85059 0.77974 0.77739 0.78665 1.18121 1.20408 1.20620 1.20540 0.81425 0.86295 0.87045 1.90511 1.57861 1.16399 1.86362 1.22101 1.02773 0.89578 0.85397 1.86077 1.82614 1.36980 1.17979 1.19545 0.96371 0.94219 0.84785 1.21506 1.07402 0.94432 1.00267 1.21155 0.97071 1.00785 0.91166 1.20246 1.02042 0.93290 0.97623 1.20750 1.01819 1.02274 0.91192 1.21151 0.96889 0.96279 0.95492 1.20662 1.06123 0.99353 0.92301 0.88550 0.92894 0.94403 0.91168 0.95104 0.88928 0.92374 0.91763 0.89067 0.89228 0.85207 0.83486 0.90521 0.90731 0.90384 0.82585 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 11.01 113.37 1.25 1.98 16 2 O -0.40 -16.40 10.44 -148.98 -1.56 -17.95 16 3 C 0.06 2.62 6.24 71.98 0.45 3.07 16 4 C 0.12 5.92 5.27 86.38 0.45 6.38 16 5 N -0.43 -22.13 2.45 -635.56 -1.56 -23.69 16 6 C -0.35 -17.48 8.29 84.04 0.70 -16.79 16 7 H 0.09 4.42 7.21 -2.91 -0.02 4.40 16 8 C 0.01 0.71 4.95 84.93 0.42 1.13 16 9 N -0.89 -47.13 11.66 21.66 0.25 -46.88 16 10 Si 0.98 39.46 29.59 68.60 2.03 41.49 16 11 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 12 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 13 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 14 C 0.46 23.77 7.67 87.66 0.67 24.44 16 15 O -0.62 -35.64 16.17 16.00 0.26 -35.38 16 16 C 0.08 3.47 3.95 71.24 0.28 3.75 16 17 O -0.32 -14.21 9.67 -73.43 -0.71 -14.92 16 18 C 0.10 3.46 6.69 22.51 0.15 3.61 16 19 C -0.22 -6.78 9.04 22.37 0.20 -6.58 16 20 C -0.08 -2.07 9.69 22.26 0.22 -1.85 16 21 C -0.13 -2.88 5.88 -19.85 -0.12 -3.00 16 22 C -0.10 -1.45 10.01 71.23 0.71 -0.73 16 23 C -0.08 -1.88 9.69 22.25 0.22 -1.66 16 24 C -0.17 -5.08 9.99 22.36 0.22 -4.85 16 25 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 4.80 5.81 -2.39 -0.01 4.79 16 31 H 0.06 2.92 7.59 -2.39 -0.02 2.91 16 32 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 33 H 0.09 3.64 7.24 -2.39 -0.02 3.63 16 34 H 0.09 3.82 7.60 -2.38 -0.02 3.80 16 35 H 0.13 3.98 6.30 -2.91 -0.02 3.97 16 36 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 39 H 0.08 0.87 8.08 -2.38 -0.02 0.85 16 40 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 41 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -67.40 348.93 5.56 -61.84 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 1.02 Total: 26.61 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 5.83 Total: 8.89 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -1.31 Total: -70.57 kcal Atomic # 8 Polarization: -66.24 SS G_CDS: -2.01 Total: -68.25 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -67.40 5.56 -61.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457184477.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.658 kcal (2) G-P(sol) polarization free energy of solvation -67.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds