Wall clock time and date at job start Tue Mar 31 2020 06:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47354 * 2 1 4 4 C 1.37715 * 119.95481 * 100.25528 * 3 2 1 5 5 C 1.39773 * 119.90057 * 180.31991 * 4 3 2 6 6 C 1.47495 * 120.08881 * 179.72311 * 5 4 3 7 7 O 1.21620 * 120.00271 * 327.68961 * 6 5 4 8 8 N 1.34786 * 119.99848 * 147.69192 * 6 5 4 9 9 C 1.36902 * 119.99869 * 3.42597 * 8 6 5 10 10 H 1.08001 * 119.99890 * 318.82925 * 9 8 6 11 11 C 1.39019 * 119.99529 * 138.83645 * 9 8 6 12 12 N 1.31385 * 119.99622 * 162.01010 * 11 9 8 13 13 Si 1.86795 * 120.00268 * 342.00777 * 11 9 8 14 14 H 1.48499 * 109.47238 * 95.26740 * 13 11 9 15 15 H 1.48497 * 109.47184 * 215.26334 * 13 11 9 16 16 H 1.48497 * 109.47442 * 335.26444 * 13 11 9 17 17 C 1.46503 * 119.99694 * 183.43012 * 8 6 5 18 18 C 1.52994 * 109.47258 * 89.99680 * 17 8 6 19 19 O 1.42904 * 109.47315 * 64.99589 * 18 17 8 20 20 C 1.42898 * 114.00230 * 179.97438 * 19 18 17 21 21 C 1.39816 * 119.81815 * 359.69721 * 5 4 3 22 22 C 1.37662 * 119.90483 * 0.02562 * 21 5 4 23 23 C 1.38995 * 119.95365 * 280.00007 * 3 2 1 24 24 O 1.35715 * 119.90258 * 359.97438 * 23 3 2 25 25 H 1.09004 * 109.47195 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46924 * 300.00229 * 1 2 3 27 27 H 1.08999 * 109.46993 * 60.00029 * 1 2 3 28 28 H 1.09000 * 109.46924 * 239.99771 * 2 1 3 29 29 H 1.08999 * 109.46993 * 119.99971 * 2 1 3 30 30 H 1.08000 * 120.04783 * 0.02562 * 4 3 2 31 31 H 0.97005 * 120.00150 * 179.97438 * 12 11 9 32 32 H 1.09004 * 109.46649 * 209.99565 * 17 8 6 33 33 H 1.08992 * 109.47047 * 329.99718 * 17 8 6 34 34 H 1.08999 * 109.47554 * 184.99468 * 18 17 8 35 35 H 1.09003 * 109.47622 * 304.99781 * 18 17 8 36 36 H 1.09002 * 109.46881 * 60.00503 * 20 19 18 37 37 H 1.09004 * 109.47204 * 180.02562 * 20 19 18 38 38 H 1.08995 * 109.47560 * 300.00181 * 20 19 18 39 39 H 1.07998 * 120.05039 * 179.97438 * 21 5 4 40 40 H 1.07997 * 119.95521 * 179.97438 * 22 21 5 41 41 H 0.96701 * 114.00118 * 269.72875 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4619 1.9982 1.1741 5 6 2.9214 3.3183 1.1740 6 6 3.3766 3.9429 2.4303 7 8 2.8620 3.6294 3.4867 8 7 4.3630 4.8612 2.4075 9 6 4.8941 5.2657 1.2123 10 1 5.0856 4.5419 0.4339 11 6 5.1869 6.6081 1.0007 12 7 6.0023 6.9578 0.0316 13 14 4.4212 7.9148 2.0941 14 1 5.3613 8.2544 3.1923 15 1 4.1400 9.1309 1.2896 16 1 3.1536 7.3980 2.6697 17 6 4.8668 5.4262 3.6617 18 6 6.0245 4.5697 4.1783 19 8 7.1190 4.6459 3.2627 20 6 8.2586 3.8776 3.6539 21 6 2.9487 4.0448 -0.0202 22 6 2.5229 3.4581 -1.1905 23 6 2.0666 2.1448 -1.1860 24 8 1.6477 1.5700 -2.3419 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.4393 1.4335 2.0944 31 1 6.2064 7.8945 -0.1163 32 1 5.2172 6.4435 3.4870 33 1 4.0665 5.4396 4.4015 34 1 6.3411 4.9372 5.1544 35 1 5.6979 3.5337 4.2687 36 1 7.9786 2.8271 3.7336 37 1 9.0452 3.9886 2.9075 38 1 8.6214 4.2311 4.6189 39 1 3.3026 5.0652 -0.0245 40 1 2.5433 4.0186 -2.1133 41 1 2.3475 1.1173 -2.8322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457202595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:28 Heat of formation + Delta-G solvation = -84.355156 kcal Electronic energy + Delta-G solvation = -24278.339606 eV Core-core repulsion = 20738.381158 eV Total energy + Delta-G solvation = -3539.958448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.84491 -38.69698 -37.12814 -35.94767 -34.95264 -33.74471 -32.05116 -30.13823 -29.55796 -28.25497 -25.87194 -25.01562 -23.59153 -23.23743 -21.79642 -20.96991 -19.04771 -17.98316 -17.47150 -16.47231 -15.99447 -15.60190 -15.25773 -15.12771 -14.73491 -14.55316 -14.30859 -13.71269 -13.58708 -13.39425 -13.30594 -13.01611 -12.62331 -12.41951 -12.04075 -11.82754 -11.70468 -11.59127 -11.32671 -11.31729 -11.18568 -10.88945 -10.84668 -10.75650 -10.15193 -9.96432 -9.85200 -9.24049 -9.10476 -8.65130 -8.33224 -7.95223 -7.79681 -6.46233 -4.06113 1.47971 1.92336 3.04504 3.19912 3.26570 3.57699 4.09702 4.19867 4.34144 4.44809 4.60403 4.97094 5.07520 5.19530 5.47959 5.55402 5.56936 5.62679 5.72630 5.76187 5.80627 5.88112 5.89853 5.93650 5.97232 6.03274 6.13762 6.16900 6.25207 6.30298 6.40300 6.42569 6.60597 6.89611 6.97666 7.17084 7.27279 7.39784 7.76929 7.95748 8.04497 8.23074 8.90921 9.28234 9.59928 10.62358 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.005504 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.566961 B = 5085.637833 C = 5713.284363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 C -0.133 4.133 4 C -0.063 4.063 5 C -0.105 4.105 6 C 0.518 3.482 7 O -0.599 6.599 8 N -0.447 5.447 9 C -0.331 4.331 10 H 0.109 0.891 11 C 0.072 3.928 12 N -0.853 5.853 13 Si 0.871 3.129 14 H -0.273 1.273 15 H -0.287 1.287 16 H -0.260 1.260 17 C 0.099 3.901 18 C 0.055 3.945 19 O -0.357 6.357 20 C 0.032 3.968 21 C -0.052 4.052 22 C -0.161 4.161 23 C 0.109 3.891 24 O -0.499 6.499 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.275 0.725 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.032 0.968 37 H 0.081 0.919 38 H 0.030 0.970 39 H 0.170 0.830 40 H 0.126 0.874 41 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 -7.974 0.105 8.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.133 4.133 4 C -0.082 4.082 5 C -0.108 4.108 6 C 0.309 3.691 7 O -0.485 6.485 8 N -0.166 5.166 9 C -0.458 4.458 10 H 0.127 0.873 11 C -0.136 4.136 12 N -0.487 5.487 13 Si 0.698 3.302 14 H -0.200 1.200 15 H -0.213 1.213 16 H -0.185 1.185 17 C -0.024 4.024 18 C -0.022 4.022 19 O -0.275 6.275 20 C -0.065 4.065 21 C -0.071 4.071 22 C -0.180 4.180 23 C 0.065 3.935 24 O -0.308 6.308 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.143 0.857 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.099 0.901 38 H 0.048 0.952 39 H 0.187 0.813 40 H 0.143 0.857 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.755 -7.600 0.515 8.100 hybrid contribution 0.523 0.472 0.524 0.878 sum -2.232 -7.128 1.038 7.541 Atomic orbital electron populations 1.21723 0.95016 1.00986 1.02415 1.20287 0.96100 0.92432 1.01912 1.19920 1.03475 0.96780 0.93143 1.20915 0.96391 0.93968 0.96963 1.19903 1.02042 0.94436 0.94396 1.18214 0.79955 0.82895 0.88067 1.90630 1.58763 1.66909 1.32240 1.43513 1.30130 1.37094 1.05830 1.19067 1.41512 0.93452 0.91796 0.87336 1.25266 0.94827 0.97470 0.96052 1.69718 1.29494 1.18397 1.31114 0.87006 0.80955 0.81631 0.80582 1.19968 1.21333 1.18459 1.21768 0.94591 0.97273 0.88749 1.22857 0.88066 0.99724 0.91600 1.88223 1.23140 1.69200 1.46888 1.22658 0.89672 0.94702 0.99469 1.22343 0.91936 1.02821 0.89953 1.21416 1.01872 0.95071 0.99628 1.18476 0.98077 0.91802 0.85180 1.84747 1.38295 1.73552 1.34256 0.93042 0.92771 0.92137 0.91589 0.91578 0.85725 0.91480 0.90720 0.89509 0.93816 0.93405 0.94915 0.90064 0.95187 0.81260 0.85654 0.76265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.89 37.16 0.37 -1.41 16 2 C -0.07 -0.91 5.72 -27.88 -0.16 -1.07 16 3 C -0.13 -2.17 5.14 -104.53 -0.54 -2.70 16 4 C -0.06 -1.19 9.21 -39.20 -0.36 -1.55 16 5 C -0.10 -2.24 5.52 -104.96 -0.58 -2.82 16 6 C 0.52 12.30 7.40 -12.48 -0.09 12.21 16 7 O -0.60 -15.06 16.32 5.26 0.09 -14.97 16 8 N -0.45 -10.67 2.10 -116.01 -0.24 -10.91 16 9 C -0.33 -8.30 6.05 -15.00 -0.09 -8.39 16 10 H 0.11 2.89 6.44 -52.49 -0.34 2.56 16 11 C 0.07 1.83 5.30 -17.45 -0.09 1.74 16 12 N -0.85 -22.73 13.96 55.50 0.77 -21.96 16 13 Si 0.87 19.99 24.91 -169.99 -4.23 15.75 16 14 H -0.27 -6.11 6.74 56.52 0.38 -5.73 16 15 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.26 -6.06 7.11 56.52 0.40 -5.65 16 17 C 0.10 2.17 4.63 -4.04 -0.02 2.16 16 18 C 0.06 1.08 6.28 37.15 0.23 1.32 16 19 O -0.36 -7.53 10.18 -35.23 -0.36 -7.89 16 20 C 0.03 0.51 11.01 101.05 1.11 1.62 16 21 C -0.05 -1.07 7.74 -39.20 -0.30 -1.37 16 22 C -0.16 -2.86 9.97 -39.50 -0.39 -3.26 16 23 C 0.11 1.78 6.68 -39.01 -0.26 1.52 16 24 O -0.50 -6.79 12.61 -18.85 -0.24 -7.03 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.79 8.04 -51.93 -0.42 0.38 16 28 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 29 H 0.07 0.81 7.99 -51.93 -0.42 0.39 16 30 H 0.12 2.27 7.93 -52.49 -0.42 1.86 16 31 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.07 1.68 3.42 -51.93 -0.18 1.51 16 33 H 0.09 1.82 7.37 -51.93 -0.38 1.44 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.17 3.77 5.40 -52.49 -0.28 3.49 16 40 H 0.13 2.02 8.06 -52.49 -0.42 1.59 16 41 H 0.38 3.46 9.06 45.56 0.41 3.88 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -30.16 338.44 -5.25 -35.41 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -4.96 Total: 8.51 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.18 Total: -2.02 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.53 Total: -32.87 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.51 Total: -29.89 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.23 Total: 15.75 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.16 -5.25 -35.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.947 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds