Wall clock time and date at job start Tue Mar 31 2020 06:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47354 * 2 1 4 4 C 1.37715 * 119.95481 * 100.25528 * 3 2 1 5 5 C 1.39773 * 119.90057 * 180.31991 * 4 3 2 6 6 C 1.47495 * 120.08881 * 179.72311 * 5 4 3 7 7 O 1.21620 * 120.00271 * 327.68961 * 6 5 4 8 8 N 1.34786 * 119.99848 * 147.69192 * 6 5 4 9 9 C 1.36902 * 119.99869 * 3.42597 * 8 6 5 10 10 H 1.08001 * 119.99890 * 318.82925 * 9 8 6 11 11 C 1.39019 * 119.99529 * 138.83645 * 9 8 6 12 12 N 1.31385 * 119.99622 * 162.01010 * 11 9 8 13 13 Si 1.86795 * 120.00268 * 342.00777 * 11 9 8 14 14 H 1.48499 * 109.47238 * 95.26740 * 13 11 9 15 15 H 1.48497 * 109.47184 * 215.26334 * 13 11 9 16 16 H 1.48497 * 109.47442 * 335.26444 * 13 11 9 17 17 C 1.46503 * 119.99694 * 183.43012 * 8 6 5 18 18 C 1.52994 * 109.47258 * 89.99680 * 17 8 6 19 19 O 1.42904 * 109.47315 * 64.99589 * 18 17 8 20 20 C 1.42898 * 114.00230 * 179.97438 * 19 18 17 21 21 C 1.39816 * 119.81815 * 359.69721 * 5 4 3 22 22 C 1.37662 * 119.90483 * 0.02562 * 21 5 4 23 23 C 1.38995 * 119.95365 * 280.00007 * 3 2 1 24 24 O 1.35715 * 119.90258 * 359.97438 * 23 3 2 25 25 H 1.09004 * 109.47195 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46924 * 300.00229 * 1 2 3 27 27 H 1.08999 * 109.46993 * 60.00029 * 1 2 3 28 28 H 1.09000 * 109.46924 * 239.99771 * 2 1 3 29 29 H 1.08999 * 109.46993 * 119.99971 * 2 1 3 30 30 H 1.08000 * 120.04783 * 0.02562 * 4 3 2 31 31 H 0.97005 * 120.00150 * 179.97438 * 12 11 9 32 32 H 1.09004 * 109.46649 * 209.99565 * 17 8 6 33 33 H 1.08992 * 109.47047 * 329.99718 * 17 8 6 34 34 H 1.08999 * 109.47554 * 184.99468 * 18 17 8 35 35 H 1.09003 * 109.47622 * 304.99781 * 18 17 8 36 36 H 1.09002 * 109.46881 * 60.00503 * 20 19 18 37 37 H 1.09004 * 109.47204 * 180.02562 * 20 19 18 38 38 H 1.08995 * 109.47560 * 300.00181 * 20 19 18 39 39 H 1.07998 * 120.05039 * 179.97438 * 21 5 4 40 40 H 1.07997 * 119.95521 * 179.97438 * 22 21 5 41 41 H 0.96701 * 114.00118 * 269.72875 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4619 1.9982 1.1741 5 6 2.9214 3.3183 1.1740 6 6 3.3766 3.9429 2.4303 7 8 2.8620 3.6294 3.4867 8 7 4.3630 4.8612 2.4075 9 6 4.8941 5.2657 1.2123 10 1 5.0856 4.5419 0.4339 11 6 5.1869 6.6081 1.0007 12 7 6.0023 6.9578 0.0316 13 14 4.4212 7.9148 2.0941 14 1 5.3613 8.2544 3.1923 15 1 4.1400 9.1309 1.2896 16 1 3.1536 7.3980 2.6697 17 6 4.8668 5.4262 3.6617 18 6 6.0245 4.5697 4.1783 19 8 7.1190 4.6459 3.2627 20 6 8.2586 3.8776 3.6539 21 6 2.9487 4.0448 -0.0202 22 6 2.5229 3.4581 -1.1905 23 6 2.0666 2.1448 -1.1860 24 8 1.6477 1.5700 -2.3419 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.4393 1.4335 2.0944 31 1 6.2064 7.8945 -0.1163 32 1 5.2172 6.4435 3.4870 33 1 4.0665 5.4396 4.4015 34 1 6.3411 4.9372 5.1544 35 1 5.6979 3.5337 4.2687 36 1 7.9786 2.8271 3.7336 37 1 9.0452 3.9886 2.9075 38 1 8.6214 4.2311 4.6189 39 1 3.3026 5.0652 -0.0245 40 1 2.5433 4.0186 -2.1133 41 1 2.3475 1.1173 -2.8322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457202595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:27 Heat of formation + Delta-G solvation = -105.135960 kcal Electronic energy + Delta-G solvation = -24279.240729 eV Core-core repulsion = 20738.381158 eV Total energy + Delta-G solvation = -3540.859571 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41994 -40.23655 -38.65146 -37.28269 -36.80676 -34.95263 -33.97699 -31.71086 -30.95732 -29.65131 -27.28750 -26.86737 -24.85550 -24.73171 -23.33242 -22.35905 -20.79389 -19.31134 -19.17723 -18.13316 -17.66302 -17.10598 -16.65140 -16.53207 -16.36321 -16.16210 -15.83288 -15.35406 -15.07696 -14.68032 -14.58919 -14.46260 -14.42251 -13.82915 -13.65281 -13.30746 -13.19677 -13.07169 -12.91874 -12.66512 -12.58862 -12.37819 -12.32392 -11.92965 -11.80551 -11.72521 -11.24057 -11.05970 -10.63460 -10.45006 -9.84712 -9.62100 -9.38766 -8.42500 -6.03367 0.00374 0.48350 1.20118 1.32115 1.41155 1.88963 2.20982 2.49815 2.76652 2.91970 3.18223 3.33462 3.86287 3.93053 4.02271 4.10097 4.16696 4.30504 4.35464 4.48906 4.53407 4.54060 4.55347 4.58422 4.66010 4.70276 4.74100 4.83529 4.94050 5.08306 5.10972 5.21774 5.40611 5.43693 5.48495 5.58124 5.66358 5.93231 6.10142 6.25516 6.37591 6.89800 6.97634 7.37440 7.71347 8.69442 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.005504 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.566961 B = 5085.637833 C = 5713.284363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.070 4.070 3 C -0.127 4.127 4 C -0.066 4.066 5 C -0.138 4.138 6 C 0.513 3.487 7 O -0.619 6.619 8 N -0.456 5.456 9 C -0.315 4.315 10 H 0.085 0.915 11 C 0.039 3.961 12 N -0.889 5.889 13 Si 0.915 3.085 14 H -0.261 1.261 15 H -0.283 1.283 16 H -0.269 1.269 17 C 0.090 3.910 18 C 0.061 3.939 19 O -0.397 6.397 20 C 0.027 3.973 21 C -0.065 4.065 22 C -0.166 4.166 23 C 0.130 3.870 24 O -0.494 6.494 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.278 0.722 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 -9.607 -0.061 9.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C -0.127 4.127 4 C -0.085 4.085 5 C -0.141 4.141 6 C 0.305 3.695 7 O -0.507 6.507 8 N -0.175 5.175 9 C -0.443 4.443 10 H 0.103 0.897 11 C -0.165 4.165 12 N -0.526 5.526 13 Si 0.742 3.258 14 H -0.187 1.187 15 H -0.210 1.210 16 H -0.194 1.194 17 C -0.033 4.033 18 C -0.016 4.016 19 O -0.315 6.315 20 C -0.069 4.069 21 C -0.083 4.083 22 C -0.184 4.184 23 C 0.085 3.915 24 O -0.308 6.308 25 H 0.095 0.905 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.144 0.856 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -3.228 -9.246 0.342 9.800 hybrid contribution 0.624 0.812 0.483 1.132 sum -2.605 -8.434 0.824 8.866 Atomic orbital electron populations 1.21696 0.94311 1.02402 1.01421 1.20406 0.96540 0.90140 1.03586 1.20266 1.01947 0.98437 0.92069 1.21006 0.96364 0.93007 0.98141 1.19887 1.04611 0.95920 0.93673 1.18666 0.79526 0.82533 0.88783 1.90588 1.59417 1.67506 1.33192 1.43606 1.30373 1.37384 1.06104 1.18774 1.40555 0.93032 0.91951 0.89745 1.25666 0.95117 0.98709 0.97057 1.69772 1.31166 1.18833 1.32817 0.86295 0.80015 0.79842 0.79653 1.18702 1.20975 1.19375 1.21921 0.95855 0.97411 0.88116 1.22788 0.87204 0.98949 0.92686 1.88151 1.24627 1.70405 1.48365 1.22860 0.88249 0.94760 1.01030 1.22031 0.93442 1.01887 0.90951 1.21551 1.01686 0.96076 0.99086 1.18419 0.95790 0.91074 0.86248 1.84686 1.39318 1.73513 1.33241 0.90480 0.93963 0.92927 0.89280 0.90610 0.85562 0.91248 0.91417 0.88983 0.90247 0.94001 0.94071 0.89482 0.92518 0.83878 0.84180 0.73218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.89 71.98 0.71 -2.34 16 2 C -0.07 -1.58 5.72 29.85 0.17 -1.41 16 3 C -0.13 -3.88 5.14 -19.81 -0.10 -3.99 16 4 C -0.07 -2.45 9.21 22.52 0.21 -2.25 16 5 C -0.14 -6.04 5.52 -20.08 -0.11 -6.15 16 6 C 0.51 25.02 7.40 86.68 0.64 25.66 16 7 O -0.62 -31.67 16.32 -4.09 -0.07 -31.74 16 8 N -0.46 -22.29 2.10 -639.18 -1.34 -23.63 16 9 C -0.32 -16.36 6.05 84.09 0.51 -15.85 16 10 H 0.09 4.74 6.44 -2.91 -0.02 4.72 16 11 C 0.04 2.05 5.30 84.95 0.45 2.50 16 12 N -0.89 -48.63 13.96 21.68 0.30 -48.32 16 13 Si 0.92 41.78 24.91 68.60 1.71 43.49 16 14 H -0.26 -11.32 6.74 99.48 0.67 -10.65 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 17 C 0.09 3.94 4.63 86.38 0.40 4.34 16 18 C 0.06 2.35 6.28 71.98 0.45 2.80 16 19 O -0.40 -16.61 10.18 -148.98 -1.52 -18.12 16 20 C 0.03 0.83 11.01 113.37 1.25 2.08 16 21 C -0.06 -2.71 7.74 22.52 0.17 -2.54 16 22 C -0.17 -5.78 9.97 22.32 0.22 -5.56 16 23 C 0.13 3.95 6.68 22.64 0.15 4.10 16 24 O -0.49 -11.64 12.61 -90.36 -1.14 -12.78 16 25 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 1.22 8.04 -2.39 -0.02 1.20 16 28 H 0.09 1.65 7.85 -2.39 -0.02 1.63 16 29 H 0.08 1.61 7.99 -2.39 -0.02 1.59 16 30 H 0.13 4.57 7.93 -2.91 -0.02 4.55 16 31 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 32 H 0.07 3.05 3.42 -2.38 -0.01 3.04 16 33 H 0.09 3.87 7.37 -2.39 -0.02 3.85 16 34 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 2.49 8.14 -2.39 -0.02 2.48 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.14 6.74 5.40 -2.91 -0.02 6.72 16 40 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.41 5.62 9.06 -74.06 -0.67 4.95 16 Total: -1.00 -66.15 338.44 3.42 -62.74 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.34 Total: 26.99 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 5.13 Total: 1.39 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -1.04 Total: -71.95 kcal Atomic # 8 Polarization: -59.93 SS G_CDS: -2.72 Total: -62.65 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.71 Total: 43.49 kcal Total: -66.15 3.42 -62.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.400 kcal (2) G-P(sol) polarization free energy of solvation -66.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds