Wall clock time and date at job start Tue Mar 31 2020 06:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00589 * 2 1 4 4 C 1.52999 * 109.47361 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47159 * 64.99702 * 4 3 2 6 6 C 1.36895 * 120.00167 * 285.54545 * 5 4 3 7 7 H 1.07998 * 120.00175 * 315.88534 * 6 5 4 8 8 C 1.39024 * 120.00034 * 135.88499 * 6 5 4 9 9 N 1.31389 * 119.99825 * 339.20089 * 8 6 5 10 10 Si 1.86802 * 120.00111 * 159.19402 * 8 6 5 11 11 H 1.48504 * 109.46920 * 90.00638 * 10 8 6 12 12 H 1.48502 * 109.46934 * 210.00132 * 10 8 6 13 13 H 1.48494 * 109.47143 * 330.00219 * 10 8 6 14 14 C 1.34774 * 119.99682 * 105.54789 * 5 4 3 15 15 O 1.21619 * 120.00447 * 186.37735 * 14 5 4 16 16 C 1.47435 * 120.00178 * 6.37604 * 14 5 4 17 17 C 1.39762 * 120.19857 * 321.70323 * 16 14 5 18 18 C 1.37770 * 119.90600 * 180.02562 * 17 16 14 19 19 C 1.38558 * 120.30235 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.79935 * 179.97438 * 19 18 17 21 21 C 1.38067 * 120.40371 * 0.25301 * 19 18 17 22 22 C 1.50707 * 119.95793 * 179.74302 * 21 19 18 23 23 C 1.38684 * 120.08888 * 359.49666 * 21 19 18 24 24 O 1.35663 * 120.15578 * 180.25753 * 23 21 19 25 25 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46749 * 300.00299 * 1 2 3 27 27 H 1.09006 * 109.46911 * 60.00020 * 1 2 3 28 28 H 1.09000 * 109.46695 * 59.99588 * 3 2 1 29 29 H 1.09002 * 109.46993 * 300.00287 * 3 2 1 30 30 H 1.08997 * 109.46858 * 304.99577 * 4 3 2 31 31 H 1.08999 * 109.46615 * 185.00459 * 4 3 2 32 32 H 0.97006 * 119.99647 * 185.04282 * 9 8 6 33 33 H 1.08004 * 120.05025 * 0.02562 * 17 16 14 34 34 H 1.08004 * 119.84958 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47332 * 89.99888 * 20 19 18 36 36 H 1.09004 * 109.47100 * 329.99743 * 20 19 18 37 37 H 1.08995 * 109.47649 * 210.00100 * 20 19 18 38 38 H 1.08998 * 109.46694 * 90.00566 * 22 21 19 39 39 H 1.08993 * 109.47250 * 210.00278 * 22 21 19 40 40 H 1.08995 * 109.46859 * 330.00184 * 22 21 19 41 41 H 0.96703 * 113.99440 * 270.24649 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 3.7976 -0.7786 -1.4510 7 1 4.0280 -1.4765 -0.6597 8 6 3.3201 -1.2438 -2.6709 9 7 2.6643 -0.4342 -3.4715 10 14 3.6109 -3.0197 -3.1720 11 1 2.4842 -3.8600 -2.6927 12 1 3.6999 -3.1082 -4.6517 13 1 4.8796 -3.5024 -2.5700 14 6 4.5561 1.3155 -2.2093 15 8 4.8159 0.8269 -3.2923 16 6 4.8759 2.7299 -1.9430 17 6 4.0002 3.5195 -1.1927 18 6 4.3048 4.8406 -0.9480 19 6 5.4760 5.3913 -1.4428 20 6 5.7977 6.8378 -1.1688 21 6 6.3474 4.6244 -2.1904 22 6 7.6157 5.2352 -2.7286 23 6 6.0597 3.2913 -2.4423 24 8 6.9175 2.5351 -3.1722 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8515 0.5681 0.8410 31 1 3.9786 2.1763 0.0890 32 1 2.2680 -0.7759 -4.2884 33 1 3.0859 3.0947 -0.8053 34 1 3.6276 5.4499 -0.3677 35 1 6.3669 6.9143 -0.2423 36 1 4.8714 7.4044 -1.0739 37 1 6.3876 7.2412 -1.9918 38 1 8.4170 5.1092 -2.0005 39 1 7.8903 4.7405 -3.6602 40 1 7.4570 6.2974 -2.9142 41 1 6.7435 2.5504 -4.1234 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457202639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:33 Heat of formation + Delta-G solvation = -63.779727 kcal Electronic energy + Delta-G solvation = -24747.131478 eV Core-core repulsion = 21208.065248 eV Total energy + Delta-G solvation = -3539.066230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.99863 -38.02304 -36.81616 -36.38809 -34.02353 -33.27518 -31.57441 -30.66428 -28.84455 -27.38820 -26.58846 -25.55108 -24.34404 -22.25985 -21.62923 -20.98299 -19.41281 -17.40567 -16.71657 -16.07920 -15.91590 -15.71864 -15.05029 -14.78943 -14.48830 -14.26820 -14.12610 -13.79741 -13.59487 -13.22168 -12.90434 -12.72099 -12.58002 -12.40141 -12.07648 -11.84425 -11.41615 -11.30978 -11.27134 -11.03683 -10.93819 -10.77176 -10.70301 -10.52167 -10.31397 -10.02207 -9.92999 -8.89647 -8.61140 -8.23869 -8.11026 -7.87953 -6.99691 -5.97310 -3.62939 1.46204 1.62409 3.39752 3.48036 3.51730 3.73728 4.38219 4.51971 4.63425 4.71461 4.96017 5.01899 5.11592 5.29963 5.33371 5.42975 5.55955 5.58009 5.68568 5.77983 5.81019 5.86425 5.87120 5.92675 5.95316 5.96971 6.08477 6.12302 6.16144 6.24860 6.30521 6.44871 6.63064 6.73506 6.79851 6.90143 7.18112 7.78439 7.96931 8.23060 8.40770 9.16991 9.27577 9.76924 10.38252 11.11838 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.006091 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.204450 B = 4595.832839 C = 5886.883167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.348 6.348 3 C 0.057 3.943 4 C 0.081 3.919 5 N -0.434 5.434 6 C -0.321 4.321 7 H 0.078 0.922 8 C 0.078 3.922 9 N -0.824 5.824 10 Si 0.908 3.092 11 H -0.284 1.284 12 H -0.287 1.287 13 H -0.272 1.272 14 C 0.505 3.495 15 O -0.524 6.524 16 C -0.120 4.120 17 C -0.106 4.106 18 C -0.135 4.135 19 C -0.081 4.081 20 C -0.112 4.112 21 C -0.123 4.123 22 C -0.105 4.105 23 C 0.144 3.856 24 O -0.483 6.483 25 H 0.076 0.924 26 H 0.024 0.976 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.260 0.740 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 12.630 5.618 13.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.265 6.265 3 C -0.022 4.022 4 C -0.044 4.044 5 N -0.155 5.155 6 C -0.448 4.448 7 H 0.096 0.904 8 C -0.133 4.133 9 N -0.458 5.458 10 Si 0.736 3.264 11 H -0.211 1.211 12 H -0.212 1.212 13 H -0.197 1.197 14 C 0.293 3.707 15 O -0.402 6.402 16 C -0.124 4.124 17 C -0.125 4.125 18 C -0.154 4.154 19 C -0.082 4.082 20 C -0.169 4.169 21 C -0.124 4.124 22 C -0.161 4.161 23 C 0.098 3.902 24 O -0.293 6.293 25 H 0.095 0.905 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.156 0.844 34 H 0.139 0.861 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 1.714 12.071 5.377 13.325 hybrid contribution -0.697 -0.539 -0.660 1.101 sum 1.017 11.532 4.717 12.500 Atomic orbital electron populations 1.22602 0.83418 1.01771 0.98463 1.88189 1.17298 1.26199 1.94830 1.22873 0.95364 0.85727 0.98192 1.22194 0.91933 0.99306 0.90927 1.43080 1.50992 1.08029 1.13359 1.18819 1.45533 0.80266 1.00154 0.90413 1.25133 0.93693 0.97805 0.96633 1.69852 1.28630 1.35430 1.11850 0.86281 0.78525 0.83861 0.77758 1.21062 1.21241 1.19715 1.17596 0.82307 0.84229 0.86580 1.90604 1.54561 1.72282 1.22803 1.21048 0.94441 0.97203 0.99714 1.21683 0.99872 0.93486 0.97413 1.20869 0.97242 0.95126 1.02120 1.19568 0.94586 0.95840 0.98164 1.20820 1.01919 0.92238 1.01910 1.19908 0.98033 0.92703 1.01741 1.20655 0.94394 1.00004 1.01093 1.18204 0.88514 0.88172 0.95313 1.84664 1.52691 1.69293 1.22680 0.90513 0.95704 0.94739 0.94761 0.93576 0.91941 0.88969 0.93043 0.84439 0.86132 0.91391 0.91807 0.91375 0.91434 0.91659 0.91627 0.75202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 101.05 1.11 1.70 16 2 O -0.35 -7.49 9.45 -35.23 -0.33 -7.83 16 3 C 0.06 1.09 5.32 37.16 0.20 1.28 16 4 C 0.08 1.66 5.36 -4.04 -0.02 1.64 16 5 N -0.43 -11.25 2.55 -116.04 -0.30 -11.54 16 6 C -0.32 -9.10 7.99 -15.00 -0.12 -9.22 16 7 H 0.08 2.19 7.91 -52.49 -0.42 1.77 16 8 C 0.08 2.25 4.30 -17.45 -0.08 2.17 16 9 N -0.82 -24.74 11.71 55.50 0.65 -24.09 16 10 Si 0.91 22.75 29.61 -169.99 -5.03 17.72 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.50 13.38 6.63 -12.52 -0.08 13.30 16 15 O -0.52 -15.78 13.57 -11.34 -0.15 -15.93 16 16 C -0.12 -2.58 5.41 -104.84 -0.57 -3.15 16 17 C -0.11 -1.90 7.34 -39.18 -0.29 -2.19 16 18 C -0.14 -1.99 9.67 -39.63 -0.38 -2.37 16 19 C -0.08 -1.14 5.88 -104.57 -0.62 -1.76 16 20 C -0.11 -1.13 9.60 36.01 0.35 -0.79 16 21 C -0.12 -1.94 5.89 -104.52 -0.62 -2.56 16 22 C -0.11 -1.29 9.37 36.01 0.34 -0.96 16 23 C 0.14 2.82 6.66 -38.68 -0.26 2.56 16 24 O -0.48 -9.55 11.28 -35.29 -0.40 -9.94 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.95 7.22 -51.93 -0.37 0.57 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.09 1.69 3.99 -51.93 -0.21 1.48 16 32 H 0.26 7.51 8.32 -40.82 -0.34 7.17 16 33 H 0.14 2.40 3.89 -52.48 -0.20 2.20 16 34 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 37 H 0.07 0.61 5.91 -51.93 -0.31 0.31 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.79 7.54 -51.93 -0.39 0.40 16 40 H 0.07 0.66 5.92 -51.93 -0.31 0.35 16 41 H 0.39 6.61 9.06 45.56 0.41 7.02 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -35.52 332.80 -6.31 -41.83 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -4.73 Total: 5.10 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -1.03 Total: -0.32 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.35 Total: -35.64 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.88 Total: -33.71 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.03 Total: 17.72 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.52 -6.31 -41.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.947 kcal (2) G-P(sol) polarization free energy of solvation -35.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds