Wall clock time and date at job start Tue Mar 31 2020 06:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00589 * 2 1 4 4 C 1.52999 * 109.47361 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47159 * 64.99702 * 4 3 2 6 6 C 1.36895 * 120.00167 * 285.54545 * 5 4 3 7 7 H 1.07998 * 120.00175 * 315.88534 * 6 5 4 8 8 C 1.39024 * 120.00034 * 135.88499 * 6 5 4 9 9 N 1.31389 * 119.99825 * 339.20089 * 8 6 5 10 10 Si 1.86802 * 120.00111 * 159.19402 * 8 6 5 11 11 H 1.48504 * 109.46920 * 90.00638 * 10 8 6 12 12 H 1.48502 * 109.46934 * 210.00132 * 10 8 6 13 13 H 1.48494 * 109.47143 * 330.00219 * 10 8 6 14 14 C 1.34774 * 119.99682 * 105.54789 * 5 4 3 15 15 O 1.21619 * 120.00447 * 186.37735 * 14 5 4 16 16 C 1.47435 * 120.00178 * 6.37604 * 14 5 4 17 17 C 1.39762 * 120.19857 * 321.70323 * 16 14 5 18 18 C 1.37770 * 119.90600 * 180.02562 * 17 16 14 19 19 C 1.38558 * 120.30235 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.79935 * 179.97438 * 19 18 17 21 21 C 1.38067 * 120.40371 * 0.25301 * 19 18 17 22 22 C 1.50707 * 119.95793 * 179.74302 * 21 19 18 23 23 C 1.38684 * 120.08888 * 359.49666 * 21 19 18 24 24 O 1.35663 * 120.15578 * 180.25753 * 23 21 19 25 25 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46749 * 300.00299 * 1 2 3 27 27 H 1.09006 * 109.46911 * 60.00020 * 1 2 3 28 28 H 1.09000 * 109.46695 * 59.99588 * 3 2 1 29 29 H 1.09002 * 109.46993 * 300.00287 * 3 2 1 30 30 H 1.08997 * 109.46858 * 304.99577 * 4 3 2 31 31 H 1.08999 * 109.46615 * 185.00459 * 4 3 2 32 32 H 0.97006 * 119.99647 * 185.04282 * 9 8 6 33 33 H 1.08004 * 120.05025 * 0.02562 * 17 16 14 34 34 H 1.08004 * 119.84958 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47332 * 89.99888 * 20 19 18 36 36 H 1.09004 * 109.47100 * 329.99743 * 20 19 18 37 37 H 1.08995 * 109.47649 * 210.00100 * 20 19 18 38 38 H 1.08998 * 109.46694 * 90.00566 * 22 21 19 39 39 H 1.08993 * 109.47250 * 210.00278 * 22 21 19 40 40 H 1.08995 * 109.46859 * 330.00184 * 22 21 19 41 41 H 0.96703 * 113.99440 * 270.24649 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 3.7976 -0.7786 -1.4510 7 1 4.0280 -1.4765 -0.6597 8 6 3.3201 -1.2438 -2.6709 9 7 2.6643 -0.4342 -3.4715 10 14 3.6109 -3.0197 -3.1720 11 1 2.4842 -3.8600 -2.6927 12 1 3.6999 -3.1082 -4.6517 13 1 4.8796 -3.5024 -2.5700 14 6 4.5561 1.3155 -2.2093 15 8 4.8159 0.8269 -3.2923 16 6 4.8759 2.7299 -1.9430 17 6 4.0002 3.5195 -1.1927 18 6 4.3048 4.8406 -0.9480 19 6 5.4760 5.3913 -1.4428 20 6 5.7977 6.8378 -1.1688 21 6 6.3474 4.6244 -2.1904 22 6 7.6157 5.2352 -2.7286 23 6 6.0597 3.2913 -2.4423 24 8 6.9175 2.5351 -3.1722 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8515 0.5681 0.8410 31 1 3.9786 2.1763 0.0890 32 1 2.2680 -0.7759 -4.2884 33 1 3.0859 3.0947 -0.8053 34 1 3.6276 5.4499 -0.3677 35 1 6.3669 6.9143 -0.2423 36 1 4.8714 7.4044 -1.0739 37 1 6.3876 7.2412 -1.9918 38 1 8.4170 5.1092 -2.0005 39 1 7.8903 4.7405 -3.6602 40 1 7.4570 6.2974 -2.9142 41 1 6.7435 2.5504 -4.1234 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457202639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:33 Heat of formation + Delta-G solvation = -89.106674 kcal Electronic energy + Delta-G solvation = -24748.229737 eV Core-core repulsion = 21208.065248 eV Total energy + Delta-G solvation = -3540.164489 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.47682 -39.68659 -38.44322 -37.80475 -35.93144 -34.79350 -33.40876 -31.85919 -30.54313 -28.65782 -27.90497 -26.94826 -26.17448 -23.86472 -23.00049 -22.38432 -21.17285 -18.89295 -18.54497 -17.74756 -17.38930 -17.10579 -16.88110 -16.25487 -16.10269 -15.89853 -15.66044 -15.37732 -14.88917 -14.65136 -14.49769 -14.07221 -13.63945 -13.53895 -13.46799 -13.25545 -13.08051 -12.88619 -12.70962 -12.59845 -12.54469 -12.28642 -12.22865 -12.13842 -12.09871 -11.75740 -11.37294 -10.74030 -10.35051 -10.03345 -9.44017 -9.40047 -9.05329 -8.12166 -5.81644 0.09449 0.32782 1.36171 1.43298 1.50158 2.28244 2.41949 2.85884 3.02794 3.20797 3.32456 3.40251 3.88992 3.95860 4.06389 4.25536 4.30909 4.35589 4.40484 4.47874 4.54382 4.60664 4.64514 4.68373 4.79067 4.80121 4.86745 4.88526 4.97147 5.01102 5.07636 5.21316 5.37605 5.43087 5.46489 5.57096 5.66048 5.97623 6.27266 6.53652 6.81889 7.10552 7.24576 7.72843 8.38026 8.97155 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.006091 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.204450 B = 4595.832839 C = 5886.883167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.062 3.938 4 C 0.077 3.923 5 N -0.451 5.451 6 C -0.336 4.336 7 H 0.070 0.930 8 C 0.033 3.967 9 N -0.859 5.859 10 Si 0.961 3.039 11 H -0.266 1.266 12 H -0.293 1.293 13 H -0.272 1.272 14 C 0.497 3.503 15 O -0.578 6.578 16 C -0.163 4.163 17 C -0.110 4.110 18 C -0.125 4.125 19 C -0.065 4.065 20 C -0.112 4.112 21 C -0.124 4.124 22 C -0.104 4.104 23 C 0.122 3.878 24 O -0.500 6.500 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.023 0.977 28 H 0.084 0.916 29 H 0.026 0.974 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.253 0.747 33 H 0.139 0.861 34 H 0.163 0.837 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 15.991 7.615 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.307 6.307 3 C -0.015 4.015 4 C -0.046 4.046 5 N -0.171 5.171 6 C -0.464 4.464 7 H 0.088 0.912 8 C -0.174 4.174 9 N -0.495 5.495 10 Si 0.787 3.213 11 H -0.192 1.192 12 H -0.219 1.219 13 H -0.197 1.197 14 C 0.286 3.714 15 O -0.460 6.460 16 C -0.167 4.167 17 C -0.129 4.129 18 C -0.143 4.143 19 C -0.066 4.066 20 C -0.168 4.168 21 C -0.125 4.125 22 C -0.160 4.160 23 C 0.076 3.924 24 O -0.312 6.312 25 H 0.100 0.900 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.102 0.898 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.063 0.937 33 H 0.156 0.844 34 H 0.181 0.819 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 1.766 15.443 7.424 17.226 hybrid contribution -0.648 -1.379 -1.191 1.934 sum 1.118 14.064 6.233 15.424 Atomic orbital electron populations 1.22746 0.81352 1.02625 0.99680 1.88117 1.19743 1.27685 1.95133 1.22842 0.94023 0.85254 0.99416 1.22424 0.93423 1.00236 0.88475 1.43279 1.51353 1.07584 1.14892 1.18902 1.45513 0.81839 1.00099 0.91230 1.25836 0.93583 1.01227 0.96739 1.69964 1.30471 1.36870 1.12147 0.85459 0.78805 0.80263 0.76791 1.19151 1.21946 1.19704 1.18414 0.80873 0.86321 0.85758 1.90535 1.56416 1.74162 1.24880 1.20810 0.97094 0.95086 1.03728 1.21724 0.99203 0.94813 0.97127 1.21317 0.97940 0.93754 1.01261 1.20183 0.93204 0.97886 0.95299 1.20956 1.03624 0.88883 1.03328 1.20277 0.99633 0.91091 1.01493 1.20745 0.92831 1.01498 1.00914 1.18574 0.88295 0.89771 0.95776 1.84616 1.53033 1.70202 1.23335 0.90012 0.92005 0.95781 0.89846 0.95588 0.91791 0.86526 0.93748 0.84390 0.81899 0.89474 0.89689 0.89914 0.90563 0.92141 0.88523 0.74624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.08 11.01 113.37 1.25 2.33 16 2 O -0.39 -16.77 9.45 -148.98 -1.41 -18.18 16 3 C 0.06 2.35 5.32 71.98 0.38 2.73 16 4 C 0.08 3.21 5.36 86.38 0.46 3.67 16 5 N -0.45 -24.30 2.55 -639.28 -1.63 -25.93 16 6 C -0.34 -19.89 7.99 84.09 0.67 -19.22 16 7 H 0.07 4.10 7.91 -2.91 -0.02 4.07 16 8 C 0.03 1.97 4.30 84.95 0.37 2.33 16 9 N -0.86 -54.29 11.71 21.68 0.25 -54.04 16 10 Si 0.96 48.63 29.61 68.60 2.03 50.66 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 13 H -0.27 -13.57 7.11 99.48 0.71 -12.86 16 14 C 0.50 27.60 6.63 86.67 0.57 28.18 16 15 O -0.58 -36.99 13.57 11.78 0.16 -36.83 16 16 C -0.16 -7.18 5.41 -20.01 -0.11 -7.28 16 17 C -0.11 -3.81 7.34 22.53 0.17 -3.64 16 18 C -0.13 -3.17 9.67 22.24 0.22 -2.96 16 19 C -0.07 -1.56 5.88 -19.83 -0.12 -1.67 16 20 C -0.11 -1.56 9.60 71.24 0.68 -0.88 16 21 C -0.12 -3.62 5.89 -19.80 -0.12 -3.74 16 22 C -0.10 -2.24 9.37 71.24 0.67 -1.57 16 23 C 0.12 4.79 6.66 22.85 0.15 4.94 16 24 O -0.50 -20.68 11.28 -73.92 -0.83 -21.51 16 25 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.03 1.08 7.22 -2.39 -0.02 1.06 16 30 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.12 4.20 3.99 -2.39 -0.01 4.19 16 32 H 0.25 15.50 8.32 -92.70 -0.77 14.73 16 33 H 0.14 4.67 3.89 -2.91 -0.01 4.66 16 34 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 37 H 0.08 0.97 5.91 -2.39 -0.01 0.96 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.37 7.54 -2.39 -0.02 1.35 16 40 H 0.10 1.48 5.92 -2.39 -0.01 1.46 16 41 H 0.40 14.44 9.06 -74.06 -0.67 13.77 16 Total: -1.00 -83.62 332.80 4.21 -79.41 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.39 Total: 23.20 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 5.25 Total: 3.22 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -1.38 Total: -79.97 kcal Atomic # 8 Polarization: -74.44 SS G_CDS: -2.08 Total: -76.52 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.03 Total: 50.66 kcal Total: -83.62 4.21 -79.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.698 kcal (2) G-P(sol) polarization free energy of solvation -83.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds