Wall clock time and date at job start Tue Mar 31 2020 06:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47262 * 2 1 4 4 C 1.38554 * 119.80108 * 89.99813 * 3 2 1 5 5 C 1.37773 * 120.30871 * 180.02562 * 4 3 2 6 6 C 1.39767 * 119.89943 * 359.97438 * 5 4 3 7 7 C 1.47429 * 120.19815 * 179.97438 * 6 5 4 8 8 O 1.21627 * 119.99884 * 146.24583 * 7 6 5 9 9 N 1.34778 * 120.00080 * 326.24790 * 7 6 5 10 10 C 1.36905 * 119.99923 * 186.95698 * 9 7 6 11 11 H 1.07999 * 119.99705 * 220.80809 * 10 9 7 12 12 C 1.39021 * 120.00305 * 40.81218 * 10 9 7 13 13 N 1.31387 * 119.99723 * 22.31962 * 12 10 9 14 14 Si 1.86800 * 120.00313 * 202.31652 * 12 10 9 15 15 H 1.48506 * 109.46592 * 64.99786 * 14 12 10 16 16 H 1.48494 * 109.47094 * 184.99846 * 14 12 10 17 17 H 1.48497 * 109.47302 * 305.00326 * 14 12 10 18 18 C 1.46503 * 119.99915 * 6.95669 * 9 7 6 19 19 C 1.53001 * 109.47144 * 106.73159 * 18 9 7 20 20 O 1.42898 * 109.46937 * 64.99877 * 19 18 9 21 21 C 1.42897 * 113.99734 * 180.02562 * 20 19 18 22 22 C 1.40206 * 119.60838 * 359.97438 * 6 5 4 23 23 O 1.35664 * 120.15609 * 179.72328 * 22 6 5 24 24 C 1.38080 * 119.79881 * 270.00269 * 3 2 1 25 25 H 1.08999 * 109.46933 * 300.00314 * 1 2 3 26 26 H 1.09007 * 109.47199 * 60.00161 * 1 2 3 27 27 H 1.09000 * 109.47464 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46933 * 239.99686 * 2 1 3 29 29 H 1.09002 * 109.46755 * 119.99670 * 2 1 3 30 30 H 1.08001 * 119.84788 * 0.02562 * 4 3 2 31 31 H 1.07999 * 120.05540 * 179.97438 * 5 4 3 32 32 H 0.96994 * 119.99883 * 184.95247 * 13 12 10 33 33 H 1.08997 * 109.47301 * 226.73407 * 18 9 7 34 34 H 1.08998 * 109.47067 * 346.73407 * 18 9 7 35 35 H 1.08992 * 109.47061 * 185.00401 * 19 18 9 36 36 H 1.09004 * 109.46572 * 305.00289 * 19 18 9 37 37 H 1.08998 * 109.47423 * 60.00635 * 21 20 19 38 38 H 1.09006 * 109.47533 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.47597 * 299.99856 * 21 20 19 40 40 H 0.96699 * 113.99705 * 89.99978 * 23 22 6 41 41 H 1.08005 * 119.94989 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2619 2.0700 1.2023 5 6 2.7207 3.3691 1.2145 6 6 2.9565 4.0360 0.0091 7 6 3.4469 5.4264 0.0145 8 8 4.2026 5.8080 -0.8588 9 7 3.0579 6.2744 0.9871 10 6 3.3960 7.5991 0.9158 11 1 3.7084 8.1253 1.8057 12 6 3.3371 8.2671 -0.3020 13 7 2.5728 7.8076 -1.2669 14 14 4.3444 9.8178 -0.5665 15 1 5.7904 9.4830 -0.5176 16 1 4.0160 10.4013 -1.8920 17 1 4.0278 10.8016 0.4997 18 6 2.2732 5.7786 2.1205 19 6 3.1561 5.7286 3.3691 20 8 3.5457 7.0551 3.7304 21 6 4.3779 7.1208 4.8902 22 6 2.7240 3.3750 -1.2053 23 8 2.9439 4.0137 -2.3819 24 6 2.2611 2.0678 -1.1982 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0803 1.5554 2.1343 31 1 2.8978 3.8714 2.1540 32 1 2.5860 8.2311 -2.1394 33 1 1.4299 6.4460 2.2983 34 1 1.9036 4.7780 1.8966 35 1 2.5992 5.2771 4.1900 36 1 4.0449 5.1325 3.1618 37 1 5.2920 6.5539 4.7142 38 1 4.6302 8.1607 5.0980 39 1 3.8467 6.6981 5.7430 40 1 3.8419 3.9085 -2.7246 41 1 2.0801 1.5546 -2.1312 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457204246.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:30 Heat of formation + Delta-G solvation = -62.737971 kcal Electronic energy + Delta-G solvation = -24474.628122 eV Core-core repulsion = 20935.607066 eV Total energy + Delta-G solvation = -3539.021056 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.91466 -38.02203 -37.01190 -36.47370 -34.18274 -33.57409 -31.87012 -29.85566 -29.04652 -28.73451 -25.97343 -25.02753 -23.68943 -22.38032 -22.06518 -20.92602 -19.64151 -17.31461 -16.97873 -16.26888 -16.08485 -15.59243 -15.23661 -14.85041 -14.64928 -14.28500 -14.18356 -13.82905 -13.80431 -13.52051 -13.20660 -13.00011 -12.51955 -12.32812 -11.76389 -11.65977 -11.42040 -11.29277 -11.22012 -11.11590 -10.95419 -10.84941 -10.68968 -10.44412 -10.35308 -10.11573 -9.83385 -9.17233 -8.59779 -8.39327 -8.12915 -7.93566 -7.04876 -5.99324 -3.66088 1.45157 1.64351 3.42589 3.48733 3.52734 3.75270 4.28118 4.36930 4.63900 4.69601 4.91074 4.99965 5.03997 5.28526 5.34873 5.36431 5.43944 5.53466 5.55702 5.61369 5.66758 5.73663 5.75710 5.84343 5.89385 5.90675 5.96363 6.03845 6.11233 6.16828 6.29057 6.32865 6.65299 6.68118 6.78847 6.87307 7.16620 7.68010 7.88687 8.32983 8.43461 9.15327 9.32131 9.76348 10.36831 11.08048 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015534 B = 0.005931 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.024992 B = 4719.462321 C = 6158.029159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.072 4.072 4 C -0.139 4.139 5 C -0.111 4.111 6 C -0.126 4.126 7 C 0.512 3.488 8 O -0.538 6.538 9 N -0.432 5.432 10 C -0.331 4.331 11 H 0.097 0.903 12 C 0.068 3.932 13 N -0.827 5.827 14 Si 0.907 3.093 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.277 1.277 18 C 0.065 3.935 19 C 0.050 3.950 20 O -0.361 6.361 21 C 0.029 3.971 22 C 0.155 3.845 23 O -0.477 6.477 24 C -0.155 4.155 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.145 0.855 32 H 0.264 0.736 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.035 0.965 38 H 0.080 0.920 39 H 0.031 0.969 40 H 0.390 0.610 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.553 -13.526 7.292 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.073 4.073 4 C -0.157 4.157 5 C -0.129 4.129 6 C -0.130 4.130 7 C 0.300 3.700 8 O -0.417 6.417 9 N -0.152 5.152 10 C -0.457 4.457 11 H 0.115 0.885 12 C -0.142 4.142 13 N -0.461 5.461 14 Si 0.734 3.266 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.059 4.059 19 C -0.028 4.028 20 O -0.279 6.279 21 C -0.068 4.068 22 C 0.109 3.891 23 O -0.287 6.287 24 C -0.174 4.174 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.138 0.862 31 H 0.163 0.837 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.098 0.902 39 H 0.050 0.950 40 H 0.247 0.753 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.933 -12.878 6.613 14.605 hybrid contribution 0.930 0.422 -0.061 1.023 sum -1.003 -12.456 6.552 14.110 Atomic orbital electron populations 1.21757 0.94860 1.01325 1.02505 1.20512 0.96092 0.92749 1.02509 1.19705 0.98928 0.95927 0.92717 1.20864 1.02831 0.94781 0.97261 1.21864 0.98652 0.94248 0.98160 1.21069 1.01317 0.97597 0.93014 1.17522 0.84184 0.82933 0.85341 1.90562 1.36971 1.76763 1.37418 1.43110 1.45624 1.07595 1.18844 1.19294 1.45751 0.84245 0.96456 0.88518 1.25227 0.94595 0.97726 0.96679 1.69917 1.31656 1.41242 1.03256 0.86361 0.81256 0.82055 0.76938 1.20233 1.21519 1.20299 1.22526 0.94574 1.01564 0.87223 1.23036 0.98000 0.84929 0.96846 1.88170 1.68434 1.26541 1.44770 1.22685 0.93839 1.02169 0.88097 1.18485 0.96096 0.89185 0.85344 1.84746 1.35205 1.74289 1.34443 1.21183 1.04205 0.93925 0.98076 0.92448 0.92457 0.92687 0.91278 0.91157 0.86168 0.83749 0.92564 0.91279 0.87723 0.93848 0.93722 0.94671 0.90151 0.95043 0.75302 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.08 -0.83 6.05 -27.88 -0.17 -1.00 16 3 C -0.07 -1.00 5.14 -104.56 -0.54 -1.54 16 4 C -0.14 -1.96 9.67 -39.63 -0.38 -2.34 16 5 C -0.11 -1.89 7.45 -39.18 -0.29 -2.19 16 6 C -0.13 -2.71 5.55 -104.84 -0.58 -3.29 16 7 C 0.51 13.58 6.44 -12.52 -0.08 13.50 16 8 O -0.54 -16.14 13.89 -12.90 -0.18 -16.32 16 9 N -0.43 -11.20 2.59 -116.03 -0.30 -11.50 16 10 C -0.33 -9.45 8.75 -15.00 -0.13 -9.58 16 11 H 0.10 2.72 6.16 -52.49 -0.32 2.40 16 12 C 0.07 1.99 4.25 -17.45 -0.07 1.92 16 13 N -0.83 -25.56 11.96 55.50 0.66 -24.90 16 14 Si 0.91 22.94 29.61 -169.99 -5.03 17.91 16 15 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C 0.07 1.33 5.39 -4.04 -0.02 1.30 16 19 C 0.05 0.86 5.30 37.16 0.20 1.06 16 20 O -0.36 -6.96 8.47 -35.23 -0.30 -7.26 16 21 C 0.03 0.42 11.01 101.05 1.11 1.53 16 22 C 0.16 3.12 6.69 -38.68 -0.26 2.87 16 23 O -0.48 -10.20 12.11 -36.85 -0.45 -10.65 16 24 C -0.16 -2.48 9.62 -39.48 -0.38 -2.86 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.15 2.28 3.69 -52.49 -0.19 2.09 16 32 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 33 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.11 1.91 3.53 -56.51 -0.20 1.71 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.76 7.57 -51.93 -0.39 0.37 16 37 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.39 6.92 9.06 45.56 0.41 7.34 16 41 H 0.12 1.72 8.06 -52.48 -0.42 1.29 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -36.29 336.89 -6.65 -42.94 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -4.90 Total: 6.38 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.23 Total: -1.67 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.36 Total: -36.40 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.92 Total: -34.23 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.03 Total: 17.91 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.29 -6.65 -42.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204246.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.802 kcal (2) G-P(sol) polarization free energy of solvation -36.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds