Wall clock time and date at job start Tue Mar 31 2020 06:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47262 * 2 1 4 4 C 1.38554 * 119.80108 * 89.99813 * 3 2 1 5 5 C 1.37773 * 120.30871 * 180.02562 * 4 3 2 6 6 C 1.39767 * 119.89943 * 359.97438 * 5 4 3 7 7 C 1.47429 * 120.19815 * 179.97438 * 6 5 4 8 8 O 1.21627 * 119.99884 * 146.24583 * 7 6 5 9 9 N 1.34778 * 120.00080 * 326.24790 * 7 6 5 10 10 C 1.36905 * 119.99923 * 186.95698 * 9 7 6 11 11 H 1.07999 * 119.99705 * 220.80809 * 10 9 7 12 12 C 1.39021 * 120.00305 * 40.81218 * 10 9 7 13 13 N 1.31387 * 119.99723 * 22.31962 * 12 10 9 14 14 Si 1.86800 * 120.00313 * 202.31652 * 12 10 9 15 15 H 1.48506 * 109.46592 * 64.99786 * 14 12 10 16 16 H 1.48494 * 109.47094 * 184.99846 * 14 12 10 17 17 H 1.48497 * 109.47302 * 305.00326 * 14 12 10 18 18 C 1.46503 * 119.99915 * 6.95669 * 9 7 6 19 19 C 1.53001 * 109.47144 * 106.73159 * 18 9 7 20 20 O 1.42898 * 109.46937 * 64.99877 * 19 18 9 21 21 C 1.42897 * 113.99734 * 180.02562 * 20 19 18 22 22 C 1.40206 * 119.60838 * 359.97438 * 6 5 4 23 23 O 1.35664 * 120.15609 * 179.72328 * 22 6 5 24 24 C 1.38080 * 119.79881 * 270.00269 * 3 2 1 25 25 H 1.08999 * 109.46933 * 300.00314 * 1 2 3 26 26 H 1.09007 * 109.47199 * 60.00161 * 1 2 3 27 27 H 1.09000 * 109.47464 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46933 * 239.99686 * 2 1 3 29 29 H 1.09002 * 109.46755 * 119.99670 * 2 1 3 30 30 H 1.08001 * 119.84788 * 0.02562 * 4 3 2 31 31 H 1.07999 * 120.05540 * 179.97438 * 5 4 3 32 32 H 0.96994 * 119.99883 * 184.95247 * 13 12 10 33 33 H 1.08997 * 109.47301 * 226.73407 * 18 9 7 34 34 H 1.08998 * 109.47067 * 346.73407 * 18 9 7 35 35 H 1.08992 * 109.47061 * 185.00401 * 19 18 9 36 36 H 1.09004 * 109.46572 * 305.00289 * 19 18 9 37 37 H 1.08998 * 109.47423 * 60.00635 * 21 20 19 38 38 H 1.09006 * 109.47533 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.47597 * 299.99856 * 21 20 19 40 40 H 0.96699 * 113.99705 * 89.99978 * 23 22 6 41 41 H 1.08005 * 119.94989 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2619 2.0700 1.2023 5 6 2.7207 3.3691 1.2145 6 6 2.9565 4.0360 0.0091 7 6 3.4469 5.4264 0.0145 8 8 4.2026 5.8080 -0.8588 9 7 3.0579 6.2744 0.9871 10 6 3.3960 7.5991 0.9158 11 1 3.7084 8.1253 1.8057 12 6 3.3371 8.2671 -0.3020 13 7 2.5728 7.8076 -1.2669 14 14 4.3444 9.8178 -0.5665 15 1 5.7904 9.4830 -0.5176 16 1 4.0160 10.4013 -1.8920 17 1 4.0278 10.8016 0.4997 18 6 2.2732 5.7786 2.1205 19 6 3.1561 5.7286 3.3691 20 8 3.5457 7.0551 3.7304 21 6 4.3779 7.1208 4.8902 22 6 2.7240 3.3750 -1.2053 23 8 2.9439 4.0137 -2.3819 24 6 2.2611 2.0678 -1.1982 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0803 1.5554 2.1343 31 1 2.8978 3.8714 2.1540 32 1 2.5860 8.2311 -2.1394 33 1 1.4299 6.4460 2.2983 34 1 1.9036 4.7780 1.8966 35 1 2.5992 5.2771 4.1900 36 1 4.0449 5.1325 3.1618 37 1 5.2920 6.5539 4.7142 38 1 4.6302 8.1607 5.0980 39 1 3.8467 6.6981 5.7430 40 1 3.8419 3.9085 -2.7246 41 1 2.0801 1.5546 -2.1312 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457204246.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:29 Heat of formation + Delta-G solvation = -88.611015 kcal Electronic energy + Delta-G solvation = -24475.750061 eV Core-core repulsion = 20935.607066 eV Total energy + Delta-G solvation = -3540.142996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.43884 -39.59588 -38.54000 -37.91750 -35.99888 -34.97999 -33.69919 -31.26190 -30.45060 -30.19272 -27.32045 -26.69866 -25.04709 -23.73929 -23.55228 -22.18008 -21.39828 -18.94528 -18.62400 -17.96820 -17.50753 -17.04972 -16.67909 -16.39008 -16.15492 -15.89014 -15.71908 -15.47081 -15.05240 -14.76652 -14.54025 -14.40935 -13.84062 -13.69667 -13.40767 -13.06238 -12.92545 -12.72791 -12.68216 -12.59618 -12.40704 -12.26167 -12.17987 -12.11807 -11.86925 -11.66073 -11.29573 -10.73907 -10.44325 -10.10129 -9.65995 -9.42364 -9.10845 -8.16983 -5.87429 0.07430 0.33836 1.36052 1.44772 1.48741 2.26148 2.40804 2.81115 3.02422 3.22160 3.34773 3.39637 3.85800 3.88652 4.05859 4.26285 4.34175 4.35814 4.40754 4.48081 4.53631 4.56655 4.60734 4.63350 4.65249 4.70357 4.89548 4.92185 5.04069 5.09528 5.15546 5.16863 5.36965 5.46398 5.47918 5.63280 5.65637 5.93160 6.31817 6.44425 6.87087 7.06076 7.26877 7.71590 8.35791 8.89720 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015534 B = 0.005931 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.024992 B = 4719.462321 C = 6158.029159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.054 4.054 4 C -0.125 4.125 5 C -0.107 4.107 6 C -0.169 4.169 7 C 0.503 3.497 8 O -0.590 6.590 9 N -0.451 5.451 10 C -0.341 4.341 11 H 0.095 0.905 12 C 0.015 3.985 13 N -0.871 5.871 14 Si 0.964 3.036 15 H -0.285 1.285 16 H -0.289 1.289 17 H -0.256 1.256 18 C 0.062 3.938 19 C 0.056 3.944 20 O -0.404 6.404 21 C 0.025 3.975 22 C 0.127 3.873 23 O -0.504 6.504 24 C -0.153 4.153 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.168 0.832 31 H 0.158 0.842 32 H 0.256 0.744 33 H 0.053 0.947 34 H 0.129 0.871 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.039 0.961 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.397 0.603 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 -16.697 9.974 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.054 4.054 4 C -0.142 4.142 5 C -0.125 4.125 6 C -0.173 4.173 7 C 0.294 3.706 8 O -0.473 6.473 9 N -0.171 5.171 10 C -0.469 4.469 11 H 0.113 0.887 12 C -0.190 4.190 13 N -0.507 5.507 14 Si 0.789 3.211 15 H -0.211 1.211 16 H -0.215 1.215 17 H -0.181 1.181 18 C -0.061 4.061 19 C -0.022 4.022 20 O -0.323 6.323 21 C -0.071 4.071 22 C 0.081 3.919 23 O -0.315 6.315 24 C -0.172 4.172 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.115 0.885 30 H 0.186 0.814 31 H 0.175 0.825 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.110 0.890 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.254 0.746 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.669 -16.056 9.353 18.772 hybrid contribution 1.133 1.178 -0.790 1.816 sum -1.536 -14.878 8.563 17.234 Atomic orbital electron populations 1.21765 0.94166 1.02680 1.01873 1.20637 0.96433 0.89998 1.04559 1.20268 0.95863 0.97617 0.91669 1.21358 1.00262 0.93271 0.99348 1.21977 0.98205 0.95509 0.96810 1.20844 1.05381 0.95514 0.95600 1.18370 0.83125 0.84968 0.84181 1.90492 1.39136 1.78537 1.39162 1.43322 1.46480 1.06898 1.20391 1.19495 1.45491 0.85611 0.96278 0.88733 1.26063 0.95548 1.00696 0.96713 1.70041 1.33886 1.43376 1.03365 0.85463 0.79043 0.79244 0.77308 1.21092 1.21482 1.18059 1.22777 0.94365 1.02159 0.86795 1.22984 0.97927 0.84644 0.96609 1.88091 1.69506 1.27720 1.46998 1.22878 0.93750 1.03039 0.87469 1.18885 0.97757 0.90822 0.84408 1.84698 1.35989 1.75371 1.35470 1.21391 1.03345 0.92212 1.00206 0.92400 0.93865 0.90429 0.90049 0.88464 0.81419 0.82517 0.93516 0.92817 0.85409 0.89041 0.93726 0.94279 0.89635 0.92019 0.74585 0.83903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.89 71.98 0.71 -1.43 16 2 C -0.08 -1.19 6.05 29.85 0.18 -1.01 16 3 C -0.05 -1.27 5.14 -19.83 -0.10 -1.37 16 4 C -0.12 -2.94 9.67 22.24 0.22 -2.72 16 5 C -0.11 -3.43 7.45 22.53 0.17 -3.26 16 6 C -0.17 -7.41 5.55 -20.01 -0.11 -7.52 16 7 C 0.50 27.92 6.44 86.66 0.56 28.48 16 8 O -0.59 -37.70 13.89 13.25 0.18 -37.51 16 9 N -0.45 -24.21 2.59 -639.25 -1.65 -25.86 16 10 C -0.34 -20.26 8.75 84.09 0.74 -19.53 16 11 H 0.10 5.50 6.16 -2.91 -0.02 5.49 16 12 C 0.01 0.92 4.25 84.95 0.36 1.28 16 13 N -0.87 -56.92 11.96 21.68 0.26 -56.66 16 14 Si 0.96 49.17 29.61 68.60 2.03 51.21 16 15 H -0.28 -14.70 7.11 99.48 0.71 -13.99 16 16 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 17 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 18 C 0.06 2.50 5.39 86.38 0.47 2.97 16 19 C 0.06 1.81 5.30 71.98 0.38 2.19 16 20 O -0.40 -15.20 8.47 -148.98 -1.26 -16.46 16 21 C 0.02 0.66 11.01 113.37 1.25 1.91 16 22 C 0.13 5.21 6.69 22.85 0.15 5.37 16 23 O -0.50 -22.93 12.11 -72.44 -0.88 -23.80 16 24 C -0.15 -4.63 9.62 22.34 0.21 -4.42 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 29 H 0.10 1.05 8.08 -2.39 -0.02 1.03 16 30 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 31 H 0.16 4.54 3.69 -2.91 -0.01 4.53 16 32 H 0.26 16.31 8.31 -92.71 -0.77 15.53 16 33 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.13 4.50 3.53 -6.69 -0.02 4.47 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.04 1.44 7.57 -2.38 -0.02 1.43 16 37 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.40 15.44 9.06 -74.06 -0.67 14.77 16 41 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -86.06 336.89 4.23 -81.83 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.37 Total: 26.33 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 5.18 Total: 0.94 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -1.40 Total: -82.52 kcal Atomic # 8 Polarization: -75.82 SS G_CDS: -1.95 Total: -77.78 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 2.03 Total: 51.21 kcal Total: -86.06 4.23 -81.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204246.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.783 kcal (2) G-P(sol) polarization free energy of solvation -86.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds