Wall clock time and date at job start Tue Mar 31 2020 07:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36007 * 116.99577 * 2 1 4 4 C 1.38138 * 120.00513 * 359.73477 * 3 2 1 5 5 C 1.39728 * 119.85045 * 179.74769 * 4 3 2 6 6 C 1.47606 * 120.07278 * 180.27057 * 5 4 3 7 7 O 1.21590 * 119.99772 * 0.27000 * 6 5 4 8 8 N 1.34782 * 120.00409 * 180.27131 * 6 5 4 9 9 C 1.46499 * 120.00253 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.46976 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.46962 * 299.99742 * 10 9 8 12 12 C 1.52995 * 109.47045 * 59.99725 * 10 9 8 13 13 C 1.50700 * 109.46728 * 179.97438 * 10 9 8 14 14 H 1.07995 * 120.00546 * 359.97438 * 13 10 9 15 15 C 1.37875 * 119.99758 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00255 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 120.00021 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.46963 * 60.00280 * 17 15 13 19 19 H 1.48500 * 109.47382 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47321 * 299.99952 * 17 15 13 21 21 C 1.39701 * 119.85739 * 0.54237 * 5 4 3 22 22 C 1.37788 * 120.00716 * 359.70572 * 21 5 4 23 23 C 1.38840 * 120.14296 * 0.02562 * 22 21 5 24 24 O 1.35800 * 119.92211 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.47382 * 59.99685 * 1 2 3 26 26 H 1.09001 * 109.46938 * 299.99671 * 1 2 3 27 27 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.07545 * 359.96332 * 4 3 2 29 29 H 0.96997 * 119.99586 * 359.97438 * 8 6 5 30 30 H 1.09000 * 109.46633 * 299.99674 * 9 8 6 31 31 H 1.08997 * 109.46963 * 59.99149 * 9 8 6 32 32 H 1.08994 * 109.47116 * 60.00371 * 11 10 9 33 33 H 1.08999 * 109.46742 * 180.02562 * 11 10 9 34 34 H 1.09000 * 109.47130 * 300.00017 * 11 10 9 35 35 H 1.09007 * 109.47133 * 60.00384 * 12 10 9 36 36 H 1.09008 * 109.46953 * 179.97438 * 12 10 9 37 37 H 1.08994 * 109.47480 * 299.99902 * 12 10 9 38 38 H 0.96999 * 120.00844 * 179.97438 * 16 15 13 39 39 H 1.08001 * 119.99990 * 179.68605 * 21 5 4 40 40 H 1.07997 * 119.93025 * 180.02562 * 22 21 5 41 41 H 0.96707 * 114.00181 * 270.01984 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2941 2.3704 -0.0055 5 6 1.9317 3.6137 -0.0002 6 6 1.1325 4.8548 0.0000 7 8 -0.0819 4.7958 0.0004 8 7 1.7490 6.0533 -0.0004 9 6 0.9559 7.2850 0.0003 10 6 1.8926 8.4948 0.0004 11 6 2.7755 8.4560 1.2493 12 6 2.7746 8.4568 -1.2492 13 6 1.0766 9.7618 0.0005 14 1 -0.0021 9.7095 0.0001 15 6 1.7073 10.9878 0.0011 16 7 3.0208 11.0517 0.0020 17 14 0.6959 12.5584 0.0005 18 1 -0.1615 12.5954 1.2124 19 1 1.6050 13.7326 0.0019 20 1 -0.1597 12.5957 -1.2126 21 6 3.3271 3.6797 -0.0007 22 6 4.0718 2.5204 -0.0004 23 6 3.4384 1.2849 -0.0001 24 8 4.1768 0.1452 -0.0003 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2155 2.3153 -0.0105 29 1 2.7178 6.1003 -0.0004 30 1 0.3265 7.3124 -0.8892 31 1 0.3277 7.3122 0.8907 32 1 3.3656 7.5397 1.2488 33 1 3.4425 9.3181 1.2495 34 1 2.1471 8.4830 2.1395 35 1 2.1455 8.4845 -2.1390 36 1 3.4417 9.3190 -1.2493 37 1 3.3647 7.5404 -1.2497 38 1 3.4646 11.9142 0.0021 39 1 3.8223 4.6395 -0.0017 40 1 5.1505 2.5729 -0.0004 41 1 4.3906 -0.1848 -0.8838 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457992311.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:17 Heat of formation + Delta-G solvation = -95.114554 kcal Electronic energy + Delta-G solvation = -23339.661440 eV Core-core repulsion = 19799.236430 eV Total energy + Delta-G solvation = -3540.425010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.73521 -39.28414 -37.99137 -36.65670 -36.15231 -33.40035 -31.11419 -30.60377 -29.90782 -27.60204 -25.76358 -25.69271 -25.05102 -23.30650 -22.41145 -20.46812 -19.12384 -18.74675 -18.09950 -16.65878 -16.50590 -16.17830 -15.85629 -15.35446 -15.03775 -14.79843 -14.68815 -14.29841 -14.21847 -13.52544 -13.02234 -12.96834 -12.83498 -12.34362 -12.28461 -12.18071 -11.75187 -11.44892 -11.25328 -11.22418 -10.87199 -10.81013 -10.75289 -10.42092 -10.23480 -9.73646 -9.67343 -9.32297 -9.08162 -8.83480 -8.54785 -8.40564 -8.29494 -6.04663 -4.15014 0.62331 1.14020 2.85866 2.98833 3.28630 3.33068 3.36104 3.58997 3.74679 3.95669 4.37893 4.62059 4.78260 4.94062 4.94396 4.96763 5.07113 5.22135 5.28060 5.34474 5.54585 5.85341 6.01806 6.11258 6.21415 6.27905 6.35138 6.47298 6.71848 6.78065 6.89426 6.93733 6.94902 6.98033 7.31351 7.47480 7.52013 7.66472 7.95952 7.97592 8.10942 8.34803 8.57591 8.85330 9.50977 10.96792 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032729 B = 0.003166 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.309513 B = 8841.532037 C = 9497.919955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.308 6.308 3 C 0.093 3.907 4 C -0.139 4.139 5 C -0.094 4.094 6 C 0.546 3.454 7 O -0.548 6.548 8 N -0.707 5.707 9 C 0.130 3.870 10 C 0.056 3.944 11 C -0.132 4.132 12 C -0.131 4.131 13 C -0.508 4.508 14 H 0.057 0.943 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.106 4.106 22 C -0.113 4.113 23 C 0.092 3.908 24 O -0.486 6.486 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.146 0.854 29 H 0.398 0.602 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.006 0.994 33 H 0.086 0.914 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.086 0.914 37 H 0.005 0.995 38 H 0.261 0.739 39 H 0.136 0.864 40 H 0.143 0.857 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.421 -18.684 -1.670 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.222 6.222 3 C 0.047 3.953 4 C -0.159 4.159 5 C -0.097 4.097 6 C 0.332 3.668 7 O -0.428 6.428 8 N -0.357 5.357 9 C 0.008 3.992 10 C 0.055 3.945 11 C -0.189 4.189 12 C -0.189 4.189 13 C -0.546 4.546 14 H 0.076 0.924 15 C -0.134 4.134 16 N -0.525 5.525 17 Si 0.722 3.278 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.125 4.125 22 C -0.131 4.131 23 C 0.047 3.953 24 O -0.296 6.296 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.164 0.836 29 H 0.235 0.765 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.024 0.976 33 H 0.105 0.895 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.024 0.976 38 H 0.071 0.929 39 H 0.154 0.846 40 H 0.160 0.840 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 1.745 -18.671 -1.058 18.782 hybrid contribution -0.261 0.992 -0.496 1.140 sum 1.484 -17.679 -1.554 17.809 Atomic orbital electron populations 1.23141 0.78135 1.04037 1.01941 1.86133 1.21491 1.25790 1.88770 1.19305 0.91671 0.84922 0.99410 1.21264 1.01117 0.90323 1.03199 1.19974 0.93598 0.93661 1.02502 1.18143 0.87494 0.83614 0.77558 1.90743 1.13650 1.87483 1.50929 1.46267 1.11000 1.06021 1.72449 1.21794 0.94451 0.82188 1.00747 1.18361 0.92340 0.90886 0.92888 1.21842 0.99823 0.99668 0.97599 1.21841 0.99814 0.99653 0.97597 1.20941 0.92791 0.89790 1.51108 0.92438 1.24873 0.94935 0.98913 0.94718 1.69784 1.07368 1.24880 1.50421 0.86624 0.79978 0.82505 0.78699 1.20263 1.21314 1.20264 1.21205 0.92552 0.98860 0.99931 1.21184 1.00854 0.90435 1.00651 1.17926 0.86088 0.86637 1.04679 1.84828 1.71952 1.39420 1.33351 0.92333 0.92278 0.88054 0.83625 0.76503 0.92434 0.92440 0.97552 0.89486 0.95355 0.95365 0.89503 0.97562 0.92903 0.84635 0.83961 0.75620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.58 10.28 -34.42 -0.35 -3.93 16 3 C 0.09 1.16 6.69 -39.19 -0.26 0.89 16 4 C -0.14 -1.88 8.58 -39.06 -0.33 -2.21 16 5 C -0.09 -1.36 5.87 -104.97 -0.62 -1.98 16 6 C 0.55 9.70 7.76 -12.44 -0.10 9.61 16 7 O -0.55 -11.45 16.34 5.29 0.09 -11.36 16 8 N -0.71 -12.56 4.91 -61.33 -0.30 -12.86 16 9 C 0.13 2.74 4.50 -4.04 -0.02 2.72 16 10 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 11 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 12 C -0.13 -2.90 8.08 37.15 0.30 -2.60 16 13 C -0.51 -13.14 8.01 -34.44 -0.28 -13.42 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 16 N -0.89 -23.31 9.35 55.43 0.52 -22.79 16 17 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.11 -1.28 9.53 -39.20 -0.37 -1.65 16 22 C -0.11 -1.19 9.96 -39.52 -0.39 -1.59 16 23 C 0.09 1.06 6.72 -38.93 -0.26 0.80 16 24 O -0.49 -4.93 13.27 -33.77 -0.45 -5.38 16 25 H 0.06 0.46 7.65 -51.93 -0.40 0.06 16 26 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 27 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.15 1.93 5.87 -52.49 -0.31 1.62 16 29 H 0.40 6.31 4.18 -40.82 -0.17 6.14 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 33 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 2.12 6.07 -51.92 -0.32 1.80 16 37 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 38 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 39 H 0.14 1.44 6.39 -52.49 -0.34 1.11 16 40 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.39 2.08 9.06 45.56 0.41 2.50 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -30.57 335.76 -6.29 -36.86 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.62 Total: 6.93 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.21 Total: -8.01 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.22 Total: -35.66 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.72 Total: -20.68 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.57 -6.29 -36.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992311.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.258 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds