Wall clock time and date at job start Tue Mar 31 2020 07:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47321 * 2 1 4 4 C 1.50702 * 109.46648 * 239.99663 * 2 1 3 5 5 H 1.07997 * 119.99935 * 241.34022 * 4 2 1 6 6 C 1.37883 * 119.99766 * 61.35356 * 4 2 1 7 7 N 1.31515 * 119.99627 * 193.97559 * 6 4 2 8 8 Si 1.86794 * 120.00192 * 13.96946 * 6 4 2 9 9 H 1.48506 * 109.47028 * 84.55023 * 8 6 4 10 10 H 1.48498 * 109.47290 * 204.55053 * 8 6 4 11 11 H 1.48503 * 109.47389 * 324.55238 * 8 6 4 12 12 C 1.53003 * 109.47307 * 120.00057 * 2 1 3 13 13 N 1.46495 * 109.46822 * 299.99799 * 12 2 1 14 14 C 1.34784 * 119.99831 * 179.97438 * 13 12 2 15 15 O 1.21278 * 120.00001 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00137 * 180.02562 * 14 13 12 17 17 O 1.42894 * 109.47198 * 180.02562 * 16 14 13 18 18 C 1.35997 * 117.00239 * 179.97438 * 17 16 14 19 19 C 1.38566 * 120.07103 * 359.95189 * 18 17 16 20 20 C 1.38240 * 120.00002 * 180.02562 * 19 18 17 21 21 C 1.38249 * 120.14862 * 359.97438 * 20 19 18 22 22 C 1.38250 * 120.14538 * 0.02562 * 21 20 19 23 23 C 1.38564 * 119.99745 * 359.97438 * 22 21 20 24 24 O 1.35990 * 120.07478 * 180.02562 * 23 22 21 25 25 H 1.09003 * 109.46709 * 309.36802 * 1 2 3 26 26 H 1.09000 * 109.47161 * 69.36576 * 1 2 3 27 27 H 1.08990 * 109.47148 * 189.37366 * 1 2 3 28 28 H 1.08998 * 109.47011 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46792 * 299.99917 * 3 2 1 30 30 H 1.08994 * 109.47082 * 60.00056 * 3 2 1 31 31 H 0.97001 * 119.99467 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.46857 * 179.97438 * 12 2 1 33 33 H 1.09002 * 109.46906 * 59.99189 * 12 2 1 34 34 H 0.97001 * 120.00452 * 359.97438 * 13 12 2 35 35 H 1.09001 * 109.47369 * 59.99680 * 16 14 13 36 36 H 1.09009 * 109.46927 * 299.99717 * 16 14 13 37 37 H 1.08002 * 119.99991 * 0.04767 * 19 18 17 38 38 H 1.07999 * 119.92736 * 180.27518 * 20 19 18 39 39 H 1.07998 * 119.93184 * 180.02562 * 21 20 19 40 40 H 1.07991 * 119.99923 * 180.02562 * 22 21 20 41 41 H 0.96701 * 113.99830 * 89.99534 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6351 -1.6011 -1.1315 6 6 1.7222 -0.2234 -2.4826 7 7 1.9156 -0.9727 -3.5460 8 14 1.0275 1.5006 -2.6684 9 1 2.1417 2.4816 -2.7084 10 1 0.2469 1.5865 -3.9288 11 1 0.1418 1.8043 -1.5159 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 1.8770 -0.4914 3.6695 15 8 2.5735 -1.4780 3.7808 16 6 1.3743 0.2187 4.9000 17 8 1.8507 -0.4549 6.0667 18 6 1.4854 0.0619 7.2705 19 6 0.6869 1.1929 7.3270 20 6 0.3169 1.7173 8.5514 21 6 0.7414 1.1155 9.7214 22 6 1.5383 -0.0132 9.6721 23 6 1.9127 -0.5439 8.4481 24 8 2.6961 -1.6543 8.3977 25 1 -0.3633 0.6519 0.7945 26 1 -0.3633 0.3621 -0.9617 27 1 -0.3633 -1.0138 0.1674 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6971 -0.6301 -4.4268 32 1 3.1301 -0.7216 1.2489 33 1 1.6766 -1.7489 1.2493 34 1 0.9944 0.7583 2.3564 35 1 0.2843 0.2187 4.8996 36 1 1.7377 1.2464 4.9004 37 1 0.3533 1.6646 6.4145 38 1 -0.3092 2.5963 8.5941 39 1 0.4499 1.5279 10.6760 40 1 1.8682 -0.4816 10.5874 41 1 2.2008 -2.4847 8.3832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458029418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:30 Heat of formation + Delta-G solvation = -99.727236 kcal Electronic energy + Delta-G solvation = -23034.839006 eV Core-core repulsion = 19494.213975 eV Total energy + Delta-G solvation = -3540.625031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57299 -40.67663 -38.89482 -38.19354 -37.40296 -35.07236 -33.51690 -31.31934 -30.99854 -29.43218 -28.00991 -27.29865 -26.62928 -23.69881 -23.25233 -21.65859 -20.97672 -19.83004 -18.68760 -18.45677 -17.99988 -17.47411 -17.22135 -16.77293 -16.65655 -16.30857 -15.88590 -15.50203 -15.12096 -15.00341 -14.87454 -14.60206 -14.38845 -14.01596 -13.75835 -13.73597 -13.31239 -13.01905 -12.93141 -12.40430 -12.37549 -12.17782 -12.08672 -11.94955 -11.76457 -11.51209 -11.12073 -10.92821 -10.62316 -10.38843 -10.09664 -9.82566 -9.13450 -8.30415 -6.32783 0.25321 0.39162 1.36727 1.38868 1.51350 1.52324 1.55385 2.35159 2.65394 2.71309 3.05884 3.30170 3.59441 3.94846 3.98795 4.06850 4.09784 4.12244 4.31551 4.34761 4.41216 4.47514 4.61708 4.75266 4.82158 4.86279 4.92800 4.93911 5.06508 5.15785 5.25827 5.35870 5.38709 5.51675 5.53310 5.71022 5.76896 5.80349 6.20438 6.29275 6.55644 6.72257 6.86057 7.20788 7.32204 8.87023 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.035659 B = 0.002880 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.016807 B = 9718.929085 C =10290.425764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.149 4.149 4 C -0.521 4.521 5 H 0.024 0.976 6 C 0.014 3.986 7 N -0.948 5.948 8 Si 0.947 3.053 9 H -0.282 1.282 10 H -0.317 1.317 11 H -0.198 1.198 12 C 0.158 3.842 13 N -0.701 5.701 14 C 0.506 3.494 15 O -0.580 6.580 16 C 0.045 3.955 17 O -0.316 6.316 18 C 0.077 3.923 19 C -0.198 4.198 20 C -0.087 4.087 21 C -0.141 4.141 22 C -0.113 4.113 23 C 0.047 3.953 24 O -0.509 6.509 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.264 0.736 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.417 0.583 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.012 11.086 26.765 30.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.206 4.206 4 C -0.559 4.559 5 H 0.043 0.957 6 C -0.183 4.183 7 N -0.587 5.587 8 Si 0.776 3.224 9 H -0.209 1.209 10 H -0.246 1.246 11 H -0.121 1.121 12 C 0.034 3.966 13 N -0.356 5.356 14 C 0.292 3.708 15 O -0.459 6.459 16 C -0.033 4.033 17 O -0.229 6.229 18 C 0.031 3.969 19 C -0.217 4.217 20 C -0.105 4.105 21 C -0.159 4.159 22 C -0.132 4.132 23 C 0.001 3.999 24 O -0.320 6.320 25 H 0.091 0.909 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.255 0.745 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.175 0.825 38 H 0.177 0.823 39 H 0.174 0.826 40 H 0.167 0.833 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -7.944 10.578 26.622 29.728 hybrid contribution -0.223 -0.138 -1.267 1.294 sum -8.167 10.440 25.355 28.611 Atomic orbital electron populations 1.22235 0.95737 1.00793 1.01190 1.18655 0.94022 0.93173 0.91419 1.22315 1.00997 0.96643 1.00607 1.21053 1.33016 1.11105 0.90744 0.95732 1.25922 0.95392 1.01873 0.95128 1.70126 1.50699 1.38443 0.99468 0.86305 0.79442 0.79522 0.77135 1.20943 1.24634 1.12124 1.21065 0.97399 0.95079 0.83072 1.45825 1.53170 1.32272 1.04297 1.20738 0.80261 0.84447 0.85355 1.90734 1.39528 1.28384 1.87285 1.22655 1.02068 0.97175 0.81414 1.86195 1.71093 1.53503 1.12119 1.19882 0.96787 0.95595 0.84617 1.21563 1.02008 0.96610 1.01508 1.21418 0.98224 0.99875 0.90959 1.21382 0.98611 0.95730 1.00144 1.21520 0.97576 0.97897 0.96158 1.18240 0.98533 0.92354 0.90723 1.84853 1.35116 1.15838 1.96220 0.90920 0.93567 0.94119 0.93630 0.94586 0.90176 0.92673 0.94027 0.94093 0.74452 0.85398 0.85763 0.82497 0.82253 0.82561 0.83319 0.74298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 7.53 71.98 0.54 -4.52 16 2 C 0.03 1.16 0.50 -52.93 -0.03 1.14 16 3 C -0.15 -5.26 7.52 71.98 0.54 -4.72 16 4 C -0.52 -28.54 8.62 25.60 0.22 -28.32 16 5 H 0.02 1.54 7.99 -2.91 -0.02 1.52 16 6 C 0.01 0.79 5.32 84.66 0.45 1.24 16 7 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 8 Si 0.95 41.70 22.79 68.60 1.56 43.26 16 9 H -0.28 -12.21 7.10 99.48 0.71 -11.50 16 10 H -0.32 -14.50 7.11 99.48 0.71 -13.79 16 11 H -0.20 -7.11 4.65 99.48 0.46 -6.65 16 12 C 0.16 6.15 4.49 86.38 0.39 6.54 16 13 N -0.70 -19.83 5.00 -463.06 -2.32 -22.15 16 14 C 0.51 15.48 7.91 87.66 0.69 16.17 16 15 O -0.58 -24.82 16.50 16.02 0.26 -24.55 16 16 C 0.04 0.90 5.22 71.24 0.37 1.27 16 17 O -0.32 -8.75 9.45 -67.10 -0.63 -9.38 16 18 C 0.08 1.72 6.70 22.57 0.15 1.87 16 19 C -0.20 -2.92 9.04 22.35 0.20 -2.72 16 20 C -0.09 -0.96 10.04 22.27 0.22 -0.73 16 21 C -0.14 -1.61 10.04 22.28 0.22 -1.39 16 22 C -0.11 -1.79 9.98 22.35 0.22 -1.57 16 23 C 0.05 1.04 6.72 22.57 0.15 1.19 16 24 O -0.51 -12.51 13.29 -79.57 -1.06 -13.57 16 25 H 0.07 1.86 7.13 -2.39 -0.02 1.84 16 26 H 0.05 1.75 4.30 -2.39 -0.01 1.74 16 27 H 0.04 1.49 8.12 -2.39 -0.02 1.47 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.33 2.25 -2.38 -0.01 1.33 16 30 H 0.08 2.02 6.86 -2.39 -0.02 2.01 16 31 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.42 8.31 6.26 -92.71 -0.58 7.73 16 35 H 0.13 1.61 7.67 -2.39 -0.02 1.59 16 36 H 0.12 1.67 7.66 -2.38 -0.02 1.65 16 37 H 0.16 1.41 6.30 -2.91 -0.02 1.39 16 38 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 39 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 40 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 41 H 0.40 6.54 9.06 -74.06 -0.67 5.86 16 Total: -1.00 -82.12 329.98 2.05 -80.06 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -0.42 Total: 19.36 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 4.36 Total: -14.54 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -2.02 Total: -80.65 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -1.43 Total: -47.50 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.56 Total: 43.26 kcal Total: -82.12 2.05 -80.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458029418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.664 kcal (2) G-P(sol) polarization free energy of solvation -82.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds