Wall clock time and date at job start Tue Mar 31 2020 07:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46991 * 2 1 4 4 C 1.50699 * 109.47131 * 240.00508 * 2 1 3 5 5 H 1.07998 * 120.00490 * 239.99917 * 4 2 1 6 6 C 1.37880 * 120.00369 * 60.00049 * 4 2 1 7 7 N 1.31512 * 119.99632 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00207 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47578 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47265 * 119.99714 * 8 6 4 11 11 H 1.48503 * 109.47085 * 239.99396 * 8 6 4 12 12 C 1.52992 * 109.47457 * 120.00425 * 2 1 3 13 13 N 1.46498 * 109.47258 * 300.00101 * 12 2 1 14 14 C 1.34777 * 120.00546 * 179.97438 * 13 12 2 15 15 O 1.21283 * 119.99530 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00306 * 180.02562 * 14 13 12 17 17 C 1.52994 * 112.85110 * 48.79952 * 16 14 13 18 18 F 1.39894 * 109.47554 * 191.19753 * 17 16 14 19 19 F 1.39895 * 109.47319 * 311.20359 * 17 16 14 20 20 F 1.39904 * 109.46654 * 71.19949 * 17 16 14 21 21 C 1.53782 * 113.61498 * 180.02562 * 16 14 13 22 22 C 1.53781 * 87.08260 * 89.19810 * 21 16 14 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 16 24 24 H 1.08994 * 109.47243 * 299.99564 * 1 2 3 25 25 H 1.09003 * 109.46975 * 60.00021 * 1 2 3 26 26 H 1.09002 * 109.46758 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.47154 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47613 * 300.00002 * 3 2 1 29 29 H 1.09002 * 109.46872 * 60.00452 * 3 2 1 30 30 H 0.97001 * 120.00271 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47708 * 179.97438 * 12 2 1 32 32 H 1.09002 * 109.47253 * 60.00160 * 12 2 1 33 33 H 0.97001 * 119.99856 * 359.97438 * 13 12 2 34 34 H 1.09001 * 113.61250 * 334.64628 * 21 16 14 35 35 H 1.08997 * 113.61225 * 203.74469 * 21 16 14 36 36 H 1.09002 * 113.61445 * 139.98212 * 22 21 16 37 37 H 1.09002 * 113.61408 * 270.79943 * 22 21 16 38 38 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 39 39 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 3.1465 -2.2867 -3.6041 10 1 1.1661 -1.5864 -4.8162 11 1 3.1466 -0.1870 -4.8166 12 6 2.0401 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4453 14 6 1.8770 -0.4916 3.6694 15 8 2.5743 -1.4777 3.7806 16 6 1.3742 0.2184 4.9000 17 6 -0.1278 0.5050 4.8485 18 9 -0.4720 1.3776 5.8864 19 9 -0.4487 1.0921 3.6199 20 9 -0.8362 -0.6928 4.9921 21 6 1.8332 -0.4306 6.2164 22 6 3.0739 0.4746 6.1386 23 6 2.2227 1.4401 5.2970 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 0.7088 1.1615 -3.4843 31 1 3.1300 -0.7217 1.2489 32 1 1.6768 -1.7490 1.2490 33 1 0.9944 0.7580 2.3564 34 1 2.0608 -1.4925 6.1235 35 1 1.1831 -0.2085 7.0626 36 1 3.3760 0.8852 7.1021 37 1 3.9040 0.0313 5.5884 38 1 1.6793 2.1746 5.8914 39 1 2.7645 1.8862 4.4631 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458043272.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:10 Heat of formation + Delta-G solvation = -175.535939 kcal Electronic energy + Delta-G solvation = -25513.096852 eV Core-core repulsion = 21427.327769 eV Total energy + Delta-G solvation = -4085.769083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.25577 -47.78785 -47.67860 -40.51306 -37.74297 -36.20961 -33.41293 -31.00069 -28.94144 -26.15097 -25.74304 -25.73536 -25.07428 -23.57213 -21.64780 -19.64438 -18.76713 -18.53465 -18.44168 -18.23733 -16.37037 -15.91469 -15.38304 -15.07559 -14.80131 -14.60310 -14.52731 -14.33062 -14.14483 -13.97736 -13.85167 -13.58007 -13.08815 -12.92123 -12.79286 -12.62085 -12.32491 -12.18061 -11.41929 -11.24755 -11.16499 -10.90281 -10.84539 -10.78592 -10.67737 -10.40935 -10.22237 -9.77677 -9.65977 -9.32553 -8.80149 -8.55871 -8.37280 -6.03389 -4.13780 2.31076 2.84495 3.23404 3.26443 3.35275 3.40104 3.56734 3.75672 3.91096 4.31220 4.38886 4.44835 4.51045 4.77811 5.14915 5.23450 5.30874 5.42742 5.62728 5.68613 5.79273 6.06702 6.17146 6.26178 6.47732 6.68424 6.82634 6.87774 6.94547 6.99543 7.32625 7.54072 7.67783 7.88050 7.99053 8.11431 8.34290 8.46433 8.86823 9.52182 10.98121 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.027350 B = 0.004521 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.518407 B = 6192.014190 C = 6555.363728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.130 3.870 13 N -0.707 5.707 14 C 0.531 3.469 15 O -0.529 6.529 16 C -0.170 4.170 17 C 0.468 3.532 18 F -0.177 7.177 19 F -0.173 7.173 20 F -0.175 7.175 21 C -0.107 4.107 22 C -0.131 4.131 23 C -0.117 4.117 24 H 0.007 0.993 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.087 0.913 29 H 0.005 0.995 30 H 0.260 0.740 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.404 0.596 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 3.113 16.618 16.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.008 3.992 13 N -0.361 5.361 14 C 0.313 3.687 15 O -0.406 6.406 16 C -0.174 4.174 17 C 0.414 3.586 18 F -0.158 7.158 19 F -0.155 7.155 20 F -0.156 7.156 21 C -0.145 4.145 22 C -0.168 4.168 23 C -0.155 4.155 24 H 0.026 0.974 25 H 0.105 0.895 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.243 0.757 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.122 2.530 16.493 16.686 hybrid contribution -0.415 0.015 -1.011 1.093 sum -0.537 2.544 15.481 15.698 Atomic orbital electron populations 1.21847 0.97640 0.99284 1.00271 1.18371 0.92929 0.92790 0.90422 1.21840 0.98569 0.98335 1.00170 1.20997 1.31511 1.12117 0.89791 0.92341 1.24883 0.94830 0.94921 0.98876 1.69814 1.36599 1.22768 1.23167 0.86507 0.78634 0.79733 0.82955 1.19764 1.21045 1.21057 1.21831 0.98303 0.95965 0.83114 1.46627 1.51851 1.32007 1.05586 1.19080 0.81741 0.84437 0.83453 1.90689 1.38300 1.25413 1.86227 1.23736 0.89592 1.03909 1.00212 1.20090 0.90526 0.74365 0.73631 1.93153 1.93512 1.70252 1.58927 1.93103 1.93904 1.84608 1.43846 1.93213 1.81054 1.45960 1.95392 1.22852 0.97532 1.02084 0.92002 1.22785 0.97059 0.96246 1.00739 1.23065 0.96965 0.94235 1.01201 0.97356 0.89497 0.95385 0.95354 0.89460 0.97580 0.93021 0.92328 0.92370 0.75656 0.88395 0.88567 0.90064 0.88809 0.87691 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.08 37.16 0.30 -2.76 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 4 C -0.51 -13.17 8.01 -34.44 -0.28 -13.45 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -23.56 9.35 55.43 0.52 -23.04 16 8 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.13 2.75 4.50 -4.05 -0.02 2.73 16 13 N -0.71 -12.89 4.66 -60.30 -0.28 -13.17 16 14 C 0.53 9.05 6.65 -10.99 -0.07 8.97 16 15 O -0.53 -10.42 15.76 5.55 0.09 -10.34 16 16 C -0.17 -2.20 0.88 -154.76 -0.14 -2.34 16 17 C 0.47 6.24 2.66 37.15 0.10 6.34 16 18 F -0.18 -2.06 15.76 2.25 0.04 -2.03 16 19 F -0.17 -2.55 14.41 2.25 0.03 -2.52 16 20 F -0.17 -2.53 17.17 2.25 0.04 -2.49 16 21 C -0.11 -1.16 6.81 -25.92 -0.18 -1.33 16 22 C -0.13 -1.26 7.73 -25.92 -0.20 -1.46 16 23 C -0.12 -1.20 7.11 -25.82 -0.18 -1.38 16 24 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 25 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.40 7.05 3.63 -40.82 -0.15 6.90 16 34 H 0.10 1.19 7.43 -51.93 -0.39 0.80 16 35 H 0.10 0.84 7.88 -51.93 -0.41 0.43 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 38 H 0.10 0.88 7.14 -51.93 -0.37 0.51 16 39 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 319.02 15.07 4.81 4.81 Total: -1.00 -27.59 319.02 -5.47 -33.06 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.15 Total: 4.60 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -0.54 Total: -4.49 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.24 Total: -36.21 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 0.11 Total: -7.03 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.59 -5.47 -33.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458043272.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.479 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds