Wall clock time and date at job start Tue Mar 31 2020 07:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46991 * 2 1 4 4 C 1.50699 * 109.47131 * 240.00508 * 2 1 3 5 5 H 1.07998 * 120.00490 * 239.99917 * 4 2 1 6 6 C 1.37880 * 120.00369 * 60.00049 * 4 2 1 7 7 N 1.31512 * 119.99632 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00207 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47578 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47265 * 119.99714 * 8 6 4 11 11 H 1.48503 * 109.47085 * 239.99396 * 8 6 4 12 12 C 1.52992 * 109.47457 * 120.00425 * 2 1 3 13 13 N 1.46498 * 109.47258 * 300.00101 * 12 2 1 14 14 C 1.34777 * 120.00546 * 179.97438 * 13 12 2 15 15 O 1.21283 * 119.99530 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00306 * 180.02562 * 14 13 12 17 17 C 1.52994 * 112.85110 * 48.79952 * 16 14 13 18 18 F 1.39894 * 109.47554 * 191.19753 * 17 16 14 19 19 F 1.39895 * 109.47319 * 311.20359 * 17 16 14 20 20 F 1.39904 * 109.46654 * 71.19949 * 17 16 14 21 21 C 1.53782 * 113.61498 * 180.02562 * 16 14 13 22 22 C 1.53781 * 87.08260 * 89.19810 * 21 16 14 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 16 24 24 H 1.08994 * 109.47243 * 299.99564 * 1 2 3 25 25 H 1.09003 * 109.46975 * 60.00021 * 1 2 3 26 26 H 1.09002 * 109.46758 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.47154 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47613 * 300.00002 * 3 2 1 29 29 H 1.09002 * 109.46872 * 60.00452 * 3 2 1 30 30 H 0.97001 * 120.00271 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47708 * 179.97438 * 12 2 1 32 32 H 1.09002 * 109.47253 * 60.00160 * 12 2 1 33 33 H 0.97001 * 119.99856 * 359.97438 * 13 12 2 34 34 H 1.09001 * 113.61250 * 334.64628 * 21 16 14 35 35 H 1.08997 * 113.61225 * 203.74469 * 21 16 14 36 36 H 1.09002 * 113.61445 * 139.98212 * 22 21 16 37 37 H 1.09002 * 113.61408 * 270.79943 * 22 21 16 38 38 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 39 39 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 3.1465 -2.2867 -3.6041 10 1 1.1661 -1.5864 -4.8162 11 1 3.1466 -0.1870 -4.8166 12 6 2.0401 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4453 14 6 1.8770 -0.4916 3.6694 15 8 2.5743 -1.4777 3.7806 16 6 1.3742 0.2184 4.9000 17 6 -0.1278 0.5050 4.8485 18 9 -0.4720 1.3776 5.8864 19 9 -0.4487 1.0921 3.6199 20 9 -0.8362 -0.6928 4.9921 21 6 1.8332 -0.4306 6.2164 22 6 3.0739 0.4746 6.1386 23 6 2.2227 1.4401 5.2970 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 0.7088 1.1615 -3.4843 31 1 3.1300 -0.7217 1.2489 32 1 1.6768 -1.7490 1.2490 33 1 0.9944 0.7580 2.3564 34 1 2.0608 -1.4925 6.1235 35 1 1.1831 -0.2085 7.0626 36 1 3.3760 0.8852 7.1021 37 1 3.9040 0.0313 5.5884 38 1 1.6793 2.1746 5.8914 39 1 2.7645 1.8862 4.4631 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458043272.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:10 Heat of formation + Delta-G solvation = -190.299614 kcal Electronic energy + Delta-G solvation = -25513.737053 eV Core-core repulsion = 21427.327769 eV Total energy + Delta-G solvation = -4086.409284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.31135 -48.84382 -48.74176 -41.71584 -39.07367 -37.81969 -35.11892 -32.84224 -30.02379 -27.61151 -27.58056 -27.05524 -26.71548 -24.71472 -22.85816 -20.90848 -20.47266 -19.63255 -19.52459 -19.32878 -17.89154 -17.39245 -16.89643 -16.61526 -16.26083 -15.95723 -15.60285 -15.46229 -15.18834 -15.11788 -14.92851 -14.85005 -14.77163 -14.50579 -14.13828 -13.86301 -13.44283 -13.38971 -13.19918 -13.11530 -12.72025 -12.57882 -12.29808 -12.15483 -12.03557 -11.74505 -11.64530 -11.52675 -11.35108 -11.00054 -10.71851 -10.42241 -10.08764 -8.03227 -6.19455 1.10919 1.41718 1.45834 1.55112 1.68881 1.95233 2.46010 2.53956 2.70322 2.89123 3.20598 3.34195 3.46825 3.60473 3.67930 4.24479 4.37950 4.45541 4.57450 4.65088 4.66407 4.81328 4.90614 4.93283 5.01152 5.01618 5.06741 5.14619 5.26281 5.30985 5.48584 5.62853 5.66060 6.09717 6.17652 6.40207 6.43536 6.84357 7.03590 7.48549 8.96265 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.027350 B = 0.004521 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.518407 B = 6192.014190 C = 6555.363728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.526 4.526 5 H 0.047 0.953 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.948 3.052 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.281 1.281 12 C 0.145 3.855 13 N -0.708 5.708 14 C 0.530 3.470 15 O -0.559 6.559 16 C -0.176 4.176 17 C 0.470 3.530 18 F -0.162 7.162 19 F -0.183 7.183 20 F -0.184 7.184 21 C -0.104 4.104 22 C -0.124 4.124 23 C -0.109 4.109 24 H 0.029 0.971 25 H 0.064 0.936 26 H 0.018 0.982 27 H 0.024 0.976 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.260 0.740 31 H 0.049 0.951 32 H 0.042 0.958 33 H 0.408 0.592 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.478 4.052 18.281 18.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.049 3.951 3 C -0.179 4.179 4 C -0.565 4.565 5 H 0.066 0.934 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.774 3.226 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.207 1.207 12 C 0.021 3.979 13 N -0.362 5.362 14 C 0.314 3.686 15 O -0.438 6.438 16 C -0.181 4.181 17 C 0.416 3.584 18 F -0.143 7.143 19 F -0.165 7.165 20 F -0.165 7.165 21 C -0.141 4.141 22 C -0.161 4.161 23 C -0.146 4.146 24 H 0.048 0.952 25 H 0.083 0.917 26 H 0.038 0.962 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.249 0.751 34 H 0.099 0.901 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.150 0.850 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.113 3.483 18.172 18.503 hybrid contribution -0.436 -0.291 -1.492 1.581 sum -0.549 3.192 16.680 16.991 Atomic orbital electron populations 1.21693 0.97498 0.98633 1.00164 1.18373 0.92993 0.93225 0.90460 1.21675 0.98236 0.97723 1.00240 1.21263 1.31735 1.12189 0.91315 0.93438 1.25475 0.95087 0.95577 1.01064 1.69920 1.36969 1.23381 1.23610 0.85666 0.78075 0.78725 0.80086 1.19880 1.20862 1.20651 1.21397 0.97558 0.95138 0.83758 1.46508 1.52195 1.32115 1.05364 1.19687 0.80809 0.83982 0.84085 1.90674 1.39554 1.26761 1.86800 1.23776 0.89635 1.05777 0.98879 1.20105 0.90466 0.74238 0.73601 1.93180 1.93388 1.69664 1.58108 1.93078 1.93980 1.84742 1.44661 1.93200 1.81304 1.46603 1.95418 1.22974 0.98508 1.01222 0.91404 1.22751 0.95879 0.95517 1.01986 1.23197 0.96374 0.93638 1.01387 0.95224 0.91684 0.96248 0.95689 0.91761 0.95006 0.92997 0.93256 0.93977 0.75081 0.90134 0.85796 0.86774 0.90801 0.84978 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.08 71.98 0.58 -5.07 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 3 C -0.12 -5.41 8.08 71.98 0.58 -4.83 16 4 C -0.53 -27.80 8.01 25.60 0.21 -27.59 16 5 H 0.05 2.55 7.74 -2.91 -0.02 2.52 16 6 C 0.03 1.46 5.15 84.66 0.44 1.89 16 7 N -0.90 -48.16 9.35 21.45 0.20 -47.96 16 8 Si 0.95 42.51 29.54 68.60 2.03 44.53 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 12 C 0.14 6.20 4.50 86.38 0.39 6.59 16 13 N -0.71 -25.42 4.66 -463.08 -2.16 -27.57 16 14 C 0.53 17.72 6.65 87.66 0.58 18.31 16 15 O -0.56 -22.11 15.76 -3.04 -0.05 -22.16 16 16 C -0.18 -4.22 0.88 -52.34 -0.05 -4.27 16 17 C 0.47 11.50 2.66 71.98 0.19 11.69 16 18 F -0.16 -3.24 15.76 44.97 0.71 -2.53 16 19 F -0.18 -5.05 14.41 44.97 0.65 -4.41 16 20 F -0.18 -5.04 17.17 44.97 0.77 -4.27 16 21 C -0.10 -1.98 6.81 31.12 0.21 -1.77 16 22 C -0.12 -2.03 7.73 31.12 0.24 -1.79 16 23 C -0.11 -1.88 7.11 31.18 0.22 -1.66 16 24 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 25 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 26 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.02 1.08 8.14 -2.38 -0.02 1.07 16 28 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 29 H 0.03 1.21 6.86 -2.39 -0.02 1.20 16 30 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 31 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.41 13.77 3.63 -92.71 -0.34 13.43 16 34 H 0.08 1.86 7.43 -2.39 -0.02 1.84 16 35 H 0.12 1.69 7.88 -2.39 -0.02 1.68 16 36 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.53 8.08 -2.39 -0.02 1.51 16 38 H 0.13 1.62 7.14 -2.39 -0.02 1.60 16 39 H 0.08 1.57 8.10 -2.39 -0.02 1.56 16 Total: -1.00 -59.30 319.02 6.46 -52.84 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.74 Total: 17.70 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 3.57 Total: -6.18 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -1.96 Total: -75.54 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.05 Total: -22.16 kcal Atomic # 9 Polarization: -13.34 SS G_CDS: 2.13 Total: -11.21 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -59.30 6.46 -52.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458043272.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.456 kcal (2) G-P(sol) polarization free energy of solvation -59.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds