Wall clock time and date at job start Tue Mar 31 2020 06:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47013 * 2 1 4 4 C 1.35181 * 125.47523 * 90.00479 * 3 2 1 5 5 C 1.40295 * 107.21159 * 179.74177 * 4 3 2 6 6 C 1.38040 * 106.52574 * 0.26228 * 5 4 3 7 7 C 1.41507 * 126.11022 * 179.97438 * 6 5 4 8 8 C 1.35785 * 120.00492 * 184.65797 * 7 6 5 9 9 C 1.41344 * 119.99476 * 29.64487 * 8 7 6 10 10 O 1.21843 * 120.00090 * 8.44997 * 9 8 7 11 11 N 1.34774 * 119.99538 * 188.44168 * 9 8 7 12 12 C 1.36742 * 120.00237 * 355.66839 * 11 9 8 13 13 H 1.07996 * 120.00375 * 322.73176 * 12 11 9 14 14 C 1.39081 * 119.99717 * 142.73065 * 12 11 9 15 15 N 1.31355 * 119.99834 * 348.10062 * 14 12 11 16 16 Si 1.86802 * 119.99841 * 168.09694 * 14 12 11 17 17 H 1.48495 * 109.47139 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46718 * 120.00178 * 16 14 12 19 19 H 1.48491 * 109.47094 * 240.00097 * 16 14 12 20 20 C 1.46505 * 119.99697 * 175.66949 * 11 9 8 21 21 C 1.53001 * 109.46798 * 90.00021 * 20 11 9 22 22 O 1.42903 * 109.47203 * 65.00413 * 21 20 11 23 23 C 1.42899 * 114.00147 * 179.97438 * 22 21 20 24 24 O 1.34039 * 125.47967 * 270.20358 * 3 2 1 25 25 H 1.09009 * 109.46992 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46730 * 299.99474 * 1 2 3 27 27 H 1.08993 * 109.47792 * 59.99630 * 1 2 3 28 28 H 1.09006 * 109.46730 * 240.00526 * 2 1 3 29 29 H 1.08992 * 109.47360 * 120.00684 * 2 1 3 30 30 H 1.07994 * 126.39214 * 359.97438 * 4 3 2 31 31 H 1.07990 * 126.73602 * 180.26486 * 5 4 3 32 32 H 1.08003 * 119.99626 * 4.65890 * 7 6 5 33 33 H 1.07991 * 120.00447 * 209.64636 * 8 7 6 34 34 H 0.97003 * 119.99770 * 185.01552 * 15 14 12 35 35 H 1.09000 * 109.47246 * 209.99735 * 20 11 9 36 36 H 1.08999 * 109.46991 * 330.00294 * 20 11 9 37 37 H 1.09003 * 109.46954 * 184.99494 * 21 20 11 38 38 H 1.08995 * 109.47718 * 304.99822 * 21 20 11 39 39 H 1.09007 * 109.47329 * 299.99674 * 23 22 21 40 40 H 1.08996 * 109.47150 * 59.99536 * 23 22 21 41 41 H 1.08998 * 109.47139 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2939 2.1604 1.1009 5 6 2.7436 3.4145 0.6612 6 6 2.7271 3.3760 -0.7186 7 6 3.1030 4.4283 -1.5868 8 6 2.9490 4.2892 -2.9287 9 6 1.9152 3.4724 -3.4404 10 8 1.0699 3.0178 -2.6898 11 7 1.8643 3.1968 -4.7587 12 6 2.7593 3.7778 -5.6138 13 1 3.0711 4.7998 -5.4567 14 6 3.2682 3.0525 -6.6859 15 7 3.0794 1.7542 -6.7492 16 14 4.2201 3.9249 -8.0358 17 1 4.2933 5.3765 -7.7311 18 1 5.5937 3.3660 -8.1132 19 1 3.5306 3.7257 -9.3357 20 6 0.8500 2.2746 -5.2755 21 6 -0.4084 3.0594 -5.6518 22 8 -0.1128 3.9423 -6.7358 23 6 -1.2270 4.7261 -7.1674 24 8 2.2880 2.1556 -1.0915 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 2.1816 1.8437 2.1272 31 1 3.0438 4.2466 1.2806 32 1 3.5123 5.3421 -1.1821 33 1 3.6164 4.8025 -3.6049 34 1 3.4951 1.2376 -7.4572 35 1 1.2378 1.7652 -6.1577 36 1 0.6040 1.5388 -4.5099 37 1 -1.1932 2.3652 -5.9524 38 1 -0.7456 3.6391 -4.7926 39 1 -2.0286 4.0662 -7.4996 40 1 -1.5815 5.3403 -6.3398 41 1 -0.9207 5.3698 -7.9920 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493226593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:16 Heat of formation + Delta-G solvation = -31.488481 kcal Electronic energy + Delta-G solvation = -24327.754551 eV Core-core repulsion = 20790.088575 eV Total energy + Delta-G solvation = -3537.665977 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.79887 -38.75475 -36.95156 -34.89031 -33.92108 -32.92935 -31.82525 -31.51198 -29.41677 -27.41764 -25.80153 -24.83416 -23.99225 -22.46617 -21.12618 -20.82578 -19.56097 -18.69680 -17.11258 -16.38732 -15.55056 -15.37818 -15.28771 -15.19148 -14.46675 -14.42124 -14.29558 -14.06010 -13.50203 -13.41175 -12.86976 -12.75545 -12.41037 -12.10786 -12.04526 -11.89951 -11.56293 -11.46696 -11.20951 -11.16273 -10.99558 -10.89395 -10.72350 -10.60718 -10.29663 -10.00528 -9.47615 -9.14153 -9.06261 -8.91855 -8.37885 -7.45450 -6.98199 -6.28076 -3.96909 1.17126 2.77497 3.16493 3.25593 3.28343 3.43848 3.63583 4.13018 4.51888 4.60051 4.95540 5.09308 5.20029 5.30639 5.44171 5.50019 5.60877 5.70706 5.76145 5.76696 5.86331 5.97436 6.02386 6.08755 6.09385 6.18201 6.28901 6.36980 6.41932 6.44000 6.45506 6.66691 6.82832 6.86778 7.05185 7.24000 7.33572 7.58030 7.86341 7.94268 8.06929 8.43171 9.13872 9.56549 10.00607 10.69978 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.005169 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.834482 B = 5415.548100 C = 5978.564098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.011 4.011 4 C -0.224 4.224 5 C -0.214 4.214 6 C 0.045 3.955 7 C -0.079 4.079 8 C -0.138 4.138 9 C 0.477 3.523 10 O -0.594 6.594 11 N -0.413 5.413 12 C -0.312 4.312 13 H 0.089 0.911 14 C 0.046 3.954 15 N -0.866 5.866 16 Si 0.923 3.077 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.279 1.279 20 C 0.100 3.900 21 C 0.056 3.944 22 O -0.363 6.363 23 C 0.031 3.969 24 O -0.110 6.110 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.137 0.863 34 H 0.270 0.730 35 H 0.132 0.868 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.029 0.971 40 H 0.030 0.970 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 0.753 6.998 7.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 C -0.064 4.064 4 C -0.243 4.243 5 C -0.234 4.234 6 C -0.007 4.007 7 C -0.100 4.100 8 C -0.158 4.158 9 C 0.270 3.730 10 O -0.482 6.482 11 N -0.129 5.129 12 C -0.441 4.441 13 H 0.107 0.893 14 C -0.159 4.159 15 N -0.504 5.504 16 Si 0.750 3.250 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.205 1.205 20 C -0.024 4.024 21 C -0.022 4.022 22 O -0.281 6.281 23 C -0.067 4.067 24 O -0.003 6.003 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.155 0.845 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.081 0.919 35 H 0.149 0.851 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.841 0.271 6.713 7.295 hybrid contribution 0.160 0.660 -0.534 0.864 sum -2.681 0.931 6.179 6.800 Atomic orbital electron populations 1.21749 0.94183 1.01536 1.02937 1.19994 0.96347 0.88277 1.03252 1.22553 1.03494 0.95331 0.85034 1.21211 1.09504 0.95109 0.98509 1.22006 1.08977 0.99037 0.93372 1.19809 1.02262 0.86051 0.92548 1.20325 1.02399 0.94946 0.92344 1.22572 0.97113 1.00849 0.95308 1.17057 0.87896 0.85276 0.82785 1.90708 1.43076 1.56975 1.57431 1.43374 1.26255 1.38536 1.04693 1.19433 1.20841 0.97062 1.06748 0.89326 1.25357 0.96837 0.94949 0.98731 1.69562 1.41897 1.05484 1.33492 0.85929 0.78567 0.79597 0.80901 1.19279 1.20919 1.20517 1.21773 0.86281 0.92008 1.02349 1.22995 0.98587 0.92169 0.88434 1.88151 1.33035 1.55232 1.51645 1.22635 0.90268 0.94868 0.98885 1.84514 1.61650 1.21668 1.32454 0.92296 0.92692 0.91546 0.90309 0.89772 0.84523 0.84120 0.83820 0.84527 0.91945 0.85132 0.91413 0.94572 0.94428 0.95264 0.95107 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.89 37.16 0.37 -1.64 16 2 C -0.04 -0.60 6.46 -27.88 -0.18 -0.78 16 3 C -0.01 -0.20 6.56 -35.40 -0.23 -0.43 16 4 C -0.22 -3.73 10.76 -39.90 -0.43 -4.16 16 5 C -0.21 -3.70 10.90 -38.88 -0.42 -4.12 16 6 C 0.04 0.90 6.11 -38.41 -0.23 0.67 16 7 C -0.08 -1.49 9.79 -39.22 -0.38 -1.87 16 8 C -0.14 -2.96 9.09 -39.28 -0.36 -3.32 16 9 C 0.48 11.95 6.87 -15.08 -0.10 11.85 16 10 O -0.59 -15.72 12.62 -19.77 -0.25 -15.97 16 11 N -0.41 -10.58 2.51 -118.14 -0.30 -10.88 16 12 C -0.31 -7.99 7.94 -15.05 -0.12 -8.11 16 13 H 0.09 2.18 6.76 -52.49 -0.35 1.82 16 14 C 0.05 1.17 5.19 -17.44 -0.09 1.08 16 15 N -0.87 -22.89 10.86 55.50 0.60 -22.28 16 16 Si 0.92 19.92 29.57 -169.99 -5.03 14.89 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 C 0.10 2.45 5.39 -4.04 -0.02 2.43 16 21 C 0.06 1.21 6.28 37.16 0.23 1.44 16 22 O -0.36 -7.99 10.18 -35.23 -0.36 -8.35 16 23 C 0.03 0.51 11.01 101.05 1.11 1.62 16 24 O -0.11 -2.47 7.18 -20.23 -0.15 -2.61 16 25 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.14 1.98 8.06 -52.49 -0.42 1.55 16 32 H 0.14 2.07 8.06 -52.48 -0.42 1.65 16 33 H 0.14 2.73 6.42 -52.49 -0.34 2.39 16 34 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.13 3.43 5.09 -51.93 -0.26 3.17 16 36 H 0.07 1.68 7.48 -51.93 -0.39 1.29 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 346.15 15.07 5.22 5.22 Total: -1.00 -31.20 346.15 -7.10 -38.29 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.98 Total: 7.04 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -0.86 Total: -5.34 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.31 Total: -33.16 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.75 Total: -26.94 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.20 -7.10 -38.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493226593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.804 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds