Wall clock time and date at job start Tue Mar 31 2020 06:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47013 * 2 1 4 4 C 1.35181 * 125.47523 * 90.00479 * 3 2 1 5 5 C 1.40295 * 107.21159 * 179.74177 * 4 3 2 6 6 C 1.38040 * 106.52574 * 0.26228 * 5 4 3 7 7 C 1.41507 * 126.11022 * 179.97438 * 6 5 4 8 8 C 1.35785 * 120.00492 * 184.65797 * 7 6 5 9 9 C 1.41344 * 119.99476 * 29.64487 * 8 7 6 10 10 O 1.21843 * 120.00090 * 8.44997 * 9 8 7 11 11 N 1.34774 * 119.99538 * 188.44168 * 9 8 7 12 12 C 1.36742 * 120.00237 * 355.66839 * 11 9 8 13 13 H 1.07996 * 120.00375 * 322.73176 * 12 11 9 14 14 C 1.39081 * 119.99717 * 142.73065 * 12 11 9 15 15 N 1.31355 * 119.99834 * 348.10062 * 14 12 11 16 16 Si 1.86802 * 119.99841 * 168.09694 * 14 12 11 17 17 H 1.48495 * 109.47139 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46718 * 120.00178 * 16 14 12 19 19 H 1.48491 * 109.47094 * 240.00097 * 16 14 12 20 20 C 1.46505 * 119.99697 * 175.66949 * 11 9 8 21 21 C 1.53001 * 109.46798 * 90.00021 * 20 11 9 22 22 O 1.42903 * 109.47203 * 65.00413 * 21 20 11 23 23 C 1.42899 * 114.00147 * 179.97438 * 22 21 20 24 24 O 1.34039 * 125.47967 * 270.20358 * 3 2 1 25 25 H 1.09009 * 109.46992 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46730 * 299.99474 * 1 2 3 27 27 H 1.08993 * 109.47792 * 59.99630 * 1 2 3 28 28 H 1.09006 * 109.46730 * 240.00526 * 2 1 3 29 29 H 1.08992 * 109.47360 * 120.00684 * 2 1 3 30 30 H 1.07994 * 126.39214 * 359.97438 * 4 3 2 31 31 H 1.07990 * 126.73602 * 180.26486 * 5 4 3 32 32 H 1.08003 * 119.99626 * 4.65890 * 7 6 5 33 33 H 1.07991 * 120.00447 * 209.64636 * 8 7 6 34 34 H 0.97003 * 119.99770 * 185.01552 * 15 14 12 35 35 H 1.09000 * 109.47246 * 209.99735 * 20 11 9 36 36 H 1.08999 * 109.46991 * 330.00294 * 20 11 9 37 37 H 1.09003 * 109.46954 * 184.99494 * 21 20 11 38 38 H 1.08995 * 109.47718 * 304.99822 * 21 20 11 39 39 H 1.09007 * 109.47329 * 299.99674 * 23 22 21 40 40 H 1.08996 * 109.47150 * 59.99536 * 23 22 21 41 41 H 1.08998 * 109.47139 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2939 2.1604 1.1009 5 6 2.7436 3.4145 0.6612 6 6 2.7271 3.3760 -0.7186 7 6 3.1030 4.4283 -1.5868 8 6 2.9490 4.2892 -2.9287 9 6 1.9152 3.4724 -3.4404 10 8 1.0699 3.0178 -2.6898 11 7 1.8643 3.1968 -4.7587 12 6 2.7593 3.7778 -5.6138 13 1 3.0711 4.7998 -5.4567 14 6 3.2682 3.0525 -6.6859 15 7 3.0794 1.7542 -6.7492 16 14 4.2201 3.9249 -8.0358 17 1 4.2933 5.3765 -7.7311 18 1 5.5937 3.3660 -8.1132 19 1 3.5306 3.7257 -9.3357 20 6 0.8500 2.2746 -5.2755 21 6 -0.4084 3.0594 -5.6518 22 8 -0.1128 3.9423 -6.7358 23 6 -1.2270 4.7261 -7.1674 24 8 2.2880 2.1556 -1.0915 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 2.1816 1.8437 2.1272 31 1 3.0438 4.2466 1.2806 32 1 3.5123 5.3421 -1.1821 33 1 3.6164 4.8025 -3.6049 34 1 3.4951 1.2376 -7.4572 35 1 1.2378 1.7652 -6.1577 36 1 0.6040 1.5388 -4.5099 37 1 -1.1932 2.3652 -5.9524 38 1 -0.7456 3.6391 -4.7926 39 1 -2.0286 4.0662 -7.4996 40 1 -1.5815 5.3403 -6.3398 41 1 -0.9207 5.3698 -7.9920 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493226593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:16 Heat of formation + Delta-G solvation = -49.151814 kcal Electronic energy + Delta-G solvation = -24328.520491 eV Core-core repulsion = 20790.088575 eV Total energy + Delta-G solvation = -3538.431916 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.25363 -40.58139 -38.60449 -36.68357 -35.31393 -34.42695 -33.44261 -33.21736 -31.13145 -28.85248 -27.31046 -26.63552 -25.46252 -23.98274 -22.54522 -22.42477 -21.15235 -20.40234 -18.76495 -18.19108 -17.16057 -17.01275 -16.92234 -16.68490 -16.15013 -16.10242 -15.85166 -15.38301 -15.10054 -14.94404 -14.49080 -14.01159 -13.90215 -13.59450 -13.47767 -13.32054 -13.31398 -13.02009 -12.86173 -12.71309 -12.48067 -12.39454 -12.38265 -12.00131 -11.90997 -11.78737 -11.02113 -10.98004 -10.55231 -10.46038 -10.25832 -9.36932 -8.48337 -8.16672 -5.93308 -0.36182 1.35974 1.46863 1.50224 1.60921 1.96359 2.30712 2.36135 2.73849 2.99465 3.17777 3.35192 3.84293 4.05572 4.18746 4.24144 4.24596 4.32674 4.36238 4.48766 4.52172 4.58470 4.59115 4.63439 4.73636 4.80190 4.85602 4.89461 4.92189 5.00666 5.05998 5.24563 5.31579 5.37273 5.40287 5.58528 5.64477 5.85205 6.07001 6.41779 6.51348 6.53642 7.22541 7.69681 8.13047 8.82633 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.005169 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.834482 B = 5415.548100 C = 5978.564098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C -0.026 4.026 4 C -0.224 4.224 5 C -0.181 4.181 6 C -0.020 4.020 7 C -0.029 4.029 8 C -0.200 4.200 9 C 0.474 3.526 10 O -0.619 6.619 11 N -0.433 5.433 12 C -0.323 4.323 13 H 0.092 0.908 14 C 0.003 3.997 15 N -0.902 5.902 16 Si 0.987 3.013 17 H -0.258 1.258 18 H -0.279 1.279 19 H -0.283 1.283 20 C 0.101 3.899 21 C 0.070 3.930 22 O -0.394 6.394 23 C 0.025 3.975 24 O -0.155 6.155 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.026 0.974 28 H 0.063 0.937 29 H 0.124 0.876 30 H 0.176 0.824 31 H 0.181 0.819 32 H 0.193 0.807 33 H 0.144 0.856 34 H 0.270 0.730 35 H 0.114 0.886 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.024 0.976 39 H 0.050 0.950 40 H 0.037 0.963 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.240 1.781 9.183 9.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 C -0.079 4.079 4 C -0.242 4.242 5 C -0.200 4.200 6 C -0.070 4.070 7 C -0.050 4.050 8 C -0.220 4.220 9 C 0.268 3.732 10 O -0.509 6.509 11 N -0.150 5.150 12 C -0.451 4.451 13 H 0.110 0.890 14 C -0.198 4.198 15 N -0.541 5.541 16 Si 0.811 3.189 17 H -0.181 1.181 18 H -0.205 1.205 19 H -0.209 1.209 20 C -0.023 4.023 21 C -0.008 4.008 22 O -0.313 6.313 23 C -0.072 4.072 24 O -0.049 6.049 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.142 0.858 30 H 0.193 0.807 31 H 0.198 0.802 32 H 0.210 0.790 33 H 0.162 0.838 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.529 1.324 8.909 9.356 hybrid contribution -0.015 0.275 -0.863 0.906 sum -2.544 1.599 8.046 8.589 Atomic orbital electron populations 1.21700 0.93564 1.03009 1.01476 1.20238 0.96817 0.86659 1.04471 1.23497 1.02643 0.96735 0.85010 1.21715 1.08308 0.94482 0.99734 1.22587 1.05130 1.00054 0.92252 1.20416 1.05839 0.86329 0.94384 1.21025 0.97562 0.95163 0.91220 1.22396 0.99035 1.03788 0.96782 1.17646 0.88356 0.84682 0.82482 1.90660 1.44248 1.58010 1.57954 1.43498 1.27003 1.39309 1.05147 1.19627 1.21082 0.97288 1.07114 0.89018 1.26141 0.97751 0.95433 1.00507 1.69692 1.43266 1.06794 1.34348 0.84968 0.77165 0.79031 0.77747 1.18136 1.20516 1.20870 1.21620 0.87584 0.92273 1.00849 1.22742 0.97514 0.92250 0.88293 1.88084 1.35878 1.55894 1.51402 1.22887 0.89557 0.95056 0.99668 1.84485 1.62641 1.23035 1.34758 0.89412 0.91496 0.95506 0.91788 0.85764 0.80665 0.80192 0.78982 0.83809 0.92039 0.86912 0.93386 0.92138 0.95731 0.93117 0.94413 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.89 71.98 0.71 -3.00 16 2 C -0.04 -1.26 6.46 29.85 0.19 -1.06 16 3 C -0.03 -0.93 6.56 24.98 0.16 -0.77 16 4 C -0.22 -6.66 10.76 22.07 0.24 -6.43 16 5 C -0.18 -5.59 10.90 22.72 0.25 -5.35 16 6 C -0.02 -0.78 6.11 23.03 0.14 -0.64 16 7 C -0.03 -1.07 9.79 22.51 0.22 -0.85 16 8 C -0.20 -8.80 9.09 22.47 0.20 -8.59 16 9 C 0.47 24.93 6.87 85.01 0.58 25.51 16 10 O -0.62 -34.49 12.62 18.93 0.24 -34.25 16 11 N -0.43 -23.39 2.51 -645.84 -1.62 -25.01 16 12 C -0.32 -17.14 7.94 84.13 0.67 -16.48 16 13 H 0.09 4.65 6.76 -2.91 -0.02 4.63 16 14 C 0.00 0.13 5.19 84.97 0.44 0.58 16 15 N -0.90 -49.78 10.86 21.69 0.24 -49.55 16 16 Si 0.99 41.60 29.57 68.60 2.03 43.63 16 17 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 18 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 20 C 0.10 5.27 5.39 86.38 0.47 5.73 16 21 C 0.07 3.13 6.28 71.98 0.45 3.59 16 22 O -0.39 -17.63 10.18 -148.98 -1.52 -19.14 16 23 C 0.02 0.80 11.01 113.37 1.25 2.05 16 24 O -0.15 -7.04 7.18 17.28 0.12 -6.92 16 25 H 0.09 1.78 8.14 -2.38 -0.02 1.77 16 26 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.18 3.78 8.06 -2.91 -0.02 3.76 16 31 H 0.18 4.03 8.06 -2.92 -0.02 4.00 16 32 H 0.19 4.83 8.06 -2.91 -0.02 4.81 16 33 H 0.14 5.93 6.42 -2.92 -0.02 5.91 16 34 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 35 H 0.11 6.32 5.09 -2.39 -0.01 6.31 16 36 H 0.05 2.59 7.48 -2.39 -0.02 2.57 16 37 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -72.54 346.15 6.49 -66.06 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 1.02 Total: 30.88 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 5.98 Total: -5.71 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -1.39 Total: -74.56 kcal Atomic # 8 Polarization: -59.16 SS G_CDS: -1.15 Total: -60.31 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -72.54 6.49 -66.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493226593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.907 kcal (2) G-P(sol) polarization free energy of solvation -72.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds