Wall clock time and date at job start Tue Mar 31 2020 06:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.46839 * 2 1 4 4 C 1.35180 * 125.48288 * 89.99768 * 3 2 1 5 5 C 1.40292 * 107.21294 * 179.72219 * 4 3 2 6 6 C 1.38031 * 106.52566 * 0.40877 * 5 4 3 7 7 C 1.41515 * 126.10812 * 179.85271 * 6 5 4 8 8 C 1.35787 * 119.99905 * 177.81375 * 7 6 5 9 9 C 1.41345 * 119.99789 * 185.31001 * 8 7 6 10 10 O 1.21842 * 120.00038 * 5.09556 * 9 8 7 11 11 N 1.34771 * 119.99650 * 185.08759 * 9 8 7 12 12 C 1.36743 * 120.00454 * 355.14321 * 11 9 8 13 13 H 1.08004 * 119.99652 * 324.35855 * 12 11 9 14 14 C 1.39069 * 120.00093 * 144.36002 * 12 11 9 15 15 N 1.31364 * 119.99860 * 156.96292 * 14 12 11 16 16 Si 1.86802 * 120.00347 * 336.95869 * 14 12 11 17 17 H 1.48492 * 109.47304 * 95.36766 * 16 14 12 18 18 H 1.48502 * 109.47223 * 215.37105 * 16 14 12 19 19 H 1.48503 * 109.46603 * 335.36675 * 16 14 12 20 20 C 1.46503 * 119.99770 * 175.13586 * 11 9 8 21 21 C 1.53004 * 109.46862 * 90.00666 * 20 11 9 22 22 O 1.42892 * 109.47331 * 64.99896 * 21 20 11 23 23 C 1.42900 * 114.00294 * 179.97438 * 22 21 20 24 24 O 1.34044 * 125.47733 * 269.97436 * 3 2 1 25 25 H 1.08999 * 109.46713 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47610 * 300.00015 * 1 2 3 27 27 H 1.08999 * 109.47333 * 60.00526 * 1 2 3 28 28 H 1.08996 * 109.47610 * 239.99985 * 2 1 3 29 29 H 1.09003 * 109.47108 * 119.99037 * 2 1 3 30 30 H 1.08002 * 126.39042 * 359.97438 * 4 3 2 31 31 H 1.08004 * 126.73677 * 180.29874 * 5 4 3 32 32 H 1.08001 * 120.00020 * 358.09109 * 7 6 5 33 33 H 1.07999 * 120.00357 * 5.30241 * 8 7 6 34 34 H 0.96999 * 120.00303 * 180.02562 * 15 14 12 35 35 H 1.09008 * 109.47412 * 210.00236 * 20 11 9 36 36 H 1.09005 * 109.47383 * 330.00278 * 20 11 9 37 37 H 1.09003 * 109.46936 * 185.00458 * 21 20 11 38 38 H 1.08998 * 109.46927 * 304.99791 * 21 20 11 39 39 H 1.09004 * 109.47300 * 300.00520 * 23 22 21 40 40 H 1.09004 * 109.46746 * 59.99866 * 23 22 21 41 41 H 1.08996 * 109.47519 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2937 2.1607 1.1008 5 6 2.7439 3.4145 0.6610 6 6 2.7245 3.3768 -0.7187 7 6 3.0975 4.4302 -1.5871 8 6 3.0724 4.2427 -2.9317 9 6 3.5507 5.2542 -3.7953 10 8 4.0705 6.2545 -3.3329 11 7 3.4320 5.1121 -5.1302 12 6 2.9402 3.9482 -5.6530 13 1 3.1708 3.0045 -5.1811 14 6 2.1433 3.9797 -6.7922 15 7 2.0414 2.9130 -7.5522 16 14 1.2175 5.5386 -7.2419 17 1 2.0146 6.3234 -8.2184 18 1 -0.0913 5.1805 -7.8452 19 1 0.9932 6.3510 -6.0192 20 6 3.8297 6.2048 -6.0214 21 6 5.3055 6.0479 -6.3935 22 8 5.4795 4.8537 -7.1586 23 6 6.8295 4.6120 -7.5599 24 8 2.2920 2.1542 -1.0916 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 2.1813 1.8440 2.1272 31 1 3.0446 4.2466 1.2803 32 1 3.4064 5.3817 -1.1802 33 1 2.6870 3.3207 -3.3413 34 1 1.4859 2.9350 -8.3470 35 1 3.2220 6.1757 -6.9258 36 1 3.6821 7.1588 -5.5150 37 1 5.6249 6.9072 -6.9833 38 1 5.9048 5.9880 -5.4850 39 1 7.1801 5.4415 -8.1741 40 1 7.4608 4.5224 -6.6758 41 1 6.8776 3.6876 -8.1354 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493226594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:18 Heat of formation + Delta-G solvation = -36.624838 kcal Electronic energy + Delta-G solvation = -23420.396884 eV Core-core repulsion = 19882.508178 eV Total energy + Delta-G solvation = -3537.888706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.25779 -39.13419 -37.10186 -35.02981 -34.38276 -33.24183 -32.24449 -32.01213 -29.75144 -27.78315 -25.86770 -25.11022 -24.17315 -22.79054 -21.63155 -21.22733 -19.78903 -18.68548 -16.98449 -16.78237 -16.19011 -15.85526 -15.75308 -15.40896 -14.81055 -14.54978 -14.47035 -14.06657 -14.04563 -13.61283 -13.05591 -12.95672 -12.70707 -12.55388 -12.40486 -12.09554 -11.89967 -11.71231 -11.63390 -11.52144 -11.25492 -11.04913 -10.86206 -10.77630 -10.15315 -10.04366 -9.91928 -9.48184 -9.22764 -9.06242 -8.63583 -7.90533 -7.37351 -6.51867 -3.97738 1.01871 2.41470 3.01896 3.13814 3.14666 3.21863 3.26361 4.08978 4.24495 4.41221 4.47128 4.75877 4.98752 5.03964 5.13408 5.19032 5.36195 5.46623 5.61573 5.69581 5.71131 5.78034 5.79553 5.83193 5.87437 5.94147 6.03406 6.04852 6.06908 6.09146 6.16760 6.29669 6.42467 6.57402 6.61736 6.83956 7.04574 7.26791 7.46970 7.81394 8.02626 8.21602 8.92263 9.30533 9.64555 10.58037 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.004313 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.250783 B = 6489.867042 C = 7104.243078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 C -0.015 4.015 4 C -0.209 4.209 5 C -0.201 4.201 6 C 0.034 3.966 7 C -0.074 4.074 8 C -0.123 4.123 9 C 0.483 3.517 10 O -0.614 6.614 11 N -0.431 5.431 12 C -0.327 4.327 13 H 0.107 0.893 14 C 0.075 3.925 15 N -0.840 5.840 16 Si 0.873 3.127 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.261 1.261 20 C 0.097 3.903 21 C 0.056 3.944 22 O -0.357 6.357 23 C 0.033 3.967 24 O -0.161 6.161 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.135 0.865 34 H 0.276 0.724 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.029 0.971 40 H 0.032 0.968 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.741 -2.143 9.333 9.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.081 4.081 3 C -0.067 4.067 4 C -0.228 4.228 5 C -0.220 4.220 6 C -0.016 4.016 7 C -0.095 4.095 8 C -0.144 4.144 9 C 0.278 3.722 10 O -0.504 6.504 11 N -0.148 5.148 12 C -0.454 4.454 13 H 0.124 0.876 14 C -0.135 4.135 15 N -0.474 5.474 16 Si 0.701 3.299 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.185 1.185 20 C -0.026 4.026 21 C -0.022 4.022 22 O -0.274 6.274 23 C -0.065 4.065 24 O -0.056 6.056 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.153 0.847 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.716 -1.996 8.942 9.190 hybrid contribution -0.185 0.855 -0.337 0.937 sum 0.531 -1.141 8.606 8.697 Atomic orbital electron populations 1.21793 0.94065 1.02119 1.02782 1.20073 0.96316 0.87755 1.03943 1.22539 1.04620 0.95281 0.84244 1.21348 1.07784 0.94803 0.98907 1.22111 1.07471 0.99224 0.93222 1.20011 1.03526 0.84632 0.93406 1.20418 1.01169 0.95514 0.92406 1.22431 0.98094 1.00457 0.93418 1.16904 0.84959 0.87665 0.82709 1.90680 1.50699 1.32648 1.76350 1.43690 1.52920 1.14321 1.03844 1.19024 1.29602 0.85133 1.11608 0.87571 1.25287 0.96073 0.97055 0.95051 1.69757 1.35314 1.30002 1.12310 0.87005 0.79521 0.83914 0.79489 1.19895 1.21283 1.18526 1.21807 0.93877 0.92239 0.94698 1.22822 0.97730 0.87129 0.94531 1.88224 1.24985 1.42329 1.71907 1.22655 0.84913 1.00552 0.98347 1.84105 1.64563 1.22493 1.34486 0.91806 0.92341 0.91982 0.89948 0.89169 0.83788 0.83335 0.83141 0.84680 0.91380 0.90743 0.89498 0.93858 0.93077 0.95213 0.94893 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 37.16 0.37 -1.08 16 2 C -0.04 -0.46 6.46 -27.88 -0.18 -0.64 16 3 C -0.02 -0.22 6.56 -35.40 -0.23 -0.45 16 4 C -0.21 -2.81 10.76 -39.90 -0.43 -3.24 16 5 C -0.20 -2.99 10.90 -38.89 -0.42 -3.41 16 6 C 0.03 0.60 6.84 -38.41 -0.26 0.34 16 7 C -0.07 -1.40 9.38 -39.21 -0.37 -1.77 16 8 C -0.12 -2.69 8.73 -39.28 -0.34 -3.03 16 9 C 0.48 11.67 7.38 -15.08 -0.11 11.56 16 10 O -0.61 -15.47 15.76 5.06 0.08 -15.39 16 11 N -0.43 -10.64 2.18 -118.14 -0.26 -10.90 16 12 C -0.33 -8.61 8.36 -15.05 -0.13 -8.74 16 13 H 0.11 2.96 6.94 -52.48 -0.36 2.59 16 14 C 0.07 1.98 5.30 -17.44 -0.09 1.89 16 15 N -0.84 -23.10 13.95 55.50 0.77 -22.33 16 16 Si 0.87 20.42 25.01 -169.99 -4.25 16.16 16 17 H -0.27 -6.12 6.66 56.52 0.38 -5.75 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 20 C 0.10 2.18 4.62 -4.04 -0.02 2.16 16 21 C 0.06 1.13 6.28 37.16 0.23 1.36 16 22 O -0.36 -7.79 10.17 -35.23 -0.36 -8.15 16 23 C 0.03 0.54 11.01 101.05 1.11 1.65 16 24 O -0.16 -2.86 10.19 4.61 0.05 -2.82 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.15 1.85 8.06 -52.48 -0.42 1.43 16 32 H 0.15 2.74 7.49 -52.49 -0.39 2.35 16 33 H 0.14 3.02 6.08 -52.49 -0.32 2.70 16 34 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.07 1.72 3.06 -51.92 -0.16 1.56 16 36 H 0.09 1.85 7.49 -51.93 -0.39 1.46 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 347.52 15.07 5.24 5.24 Total: -1.00 -30.85 347.52 -5.46 -36.31 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.86 Total: 5.28 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -0.87 Total: -3.41 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.52 Total: -33.23 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.23 Total: -26.36 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.25 Total: 16.16 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.85 -5.46 -36.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493226594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.314 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds