Wall clock time and date at job start Tue Mar 31 2020 06:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.46839 * 2 1 4 4 C 1.35180 * 125.48288 * 89.99768 * 3 2 1 5 5 C 1.40292 * 107.21294 * 179.72219 * 4 3 2 6 6 C 1.38031 * 106.52566 * 0.40877 * 5 4 3 7 7 C 1.41515 * 126.10812 * 179.85271 * 6 5 4 8 8 C 1.35787 * 119.99905 * 177.81375 * 7 6 5 9 9 C 1.41345 * 119.99789 * 185.31001 * 8 7 6 10 10 O 1.21842 * 120.00038 * 5.09556 * 9 8 7 11 11 N 1.34771 * 119.99650 * 185.08759 * 9 8 7 12 12 C 1.36743 * 120.00454 * 355.14321 * 11 9 8 13 13 H 1.08004 * 119.99652 * 324.35855 * 12 11 9 14 14 C 1.39069 * 120.00093 * 144.36002 * 12 11 9 15 15 N 1.31364 * 119.99860 * 156.96292 * 14 12 11 16 16 Si 1.86802 * 120.00347 * 336.95869 * 14 12 11 17 17 H 1.48492 * 109.47304 * 95.36766 * 16 14 12 18 18 H 1.48502 * 109.47223 * 215.37105 * 16 14 12 19 19 H 1.48503 * 109.46603 * 335.36675 * 16 14 12 20 20 C 1.46503 * 119.99770 * 175.13586 * 11 9 8 21 21 C 1.53004 * 109.46862 * 90.00666 * 20 11 9 22 22 O 1.42892 * 109.47331 * 64.99896 * 21 20 11 23 23 C 1.42900 * 114.00294 * 179.97438 * 22 21 20 24 24 O 1.34044 * 125.47733 * 269.97436 * 3 2 1 25 25 H 1.08999 * 109.46713 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47610 * 300.00015 * 1 2 3 27 27 H 1.08999 * 109.47333 * 60.00526 * 1 2 3 28 28 H 1.08996 * 109.47610 * 239.99985 * 2 1 3 29 29 H 1.09003 * 109.47108 * 119.99037 * 2 1 3 30 30 H 1.08002 * 126.39042 * 359.97438 * 4 3 2 31 31 H 1.08004 * 126.73677 * 180.29874 * 5 4 3 32 32 H 1.08001 * 120.00020 * 358.09109 * 7 6 5 33 33 H 1.07999 * 120.00357 * 5.30241 * 8 7 6 34 34 H 0.96999 * 120.00303 * 180.02562 * 15 14 12 35 35 H 1.09008 * 109.47412 * 210.00236 * 20 11 9 36 36 H 1.09005 * 109.47383 * 330.00278 * 20 11 9 37 37 H 1.09003 * 109.46936 * 185.00458 * 21 20 11 38 38 H 1.08998 * 109.46927 * 304.99791 * 21 20 11 39 39 H 1.09004 * 109.47300 * 300.00520 * 23 22 21 40 40 H 1.09004 * 109.46746 * 59.99866 * 23 22 21 41 41 H 1.08996 * 109.47519 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2937 2.1607 1.1008 5 6 2.7439 3.4145 0.6610 6 6 2.7245 3.3768 -0.7187 7 6 3.0975 4.4302 -1.5871 8 6 3.0724 4.2427 -2.9317 9 6 3.5507 5.2542 -3.7953 10 8 4.0705 6.2545 -3.3329 11 7 3.4320 5.1121 -5.1302 12 6 2.9402 3.9482 -5.6530 13 1 3.1708 3.0045 -5.1811 14 6 2.1433 3.9797 -6.7922 15 7 2.0414 2.9130 -7.5522 16 14 1.2175 5.5386 -7.2419 17 1 2.0146 6.3234 -8.2184 18 1 -0.0913 5.1805 -7.8452 19 1 0.9932 6.3510 -6.0192 20 6 3.8297 6.2048 -6.0214 21 6 5.3055 6.0479 -6.3935 22 8 5.4795 4.8537 -7.1586 23 6 6.8295 4.6120 -7.5599 24 8 2.2920 2.1542 -1.0916 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 2.1813 1.8440 2.1272 31 1 3.0446 4.2466 1.2803 32 1 3.4064 5.3817 -1.1802 33 1 2.6870 3.3207 -3.3413 34 1 1.4859 2.9350 -8.3470 35 1 3.2220 6.1757 -6.9258 36 1 3.6821 7.1588 -5.5150 37 1 5.6249 6.9072 -6.9833 38 1 5.9048 5.9880 -5.4850 39 1 7.1801 5.4415 -8.1741 40 1 7.4608 4.5224 -6.6758 41 1 6.8776 3.6876 -8.1354 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493226594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:17 Heat of formation + Delta-G solvation = -55.911154 kcal Electronic energy + Delta-G solvation = -23421.233202 eV Core-core repulsion = 19882.508178 eV Total energy + Delta-G solvation = -3538.725023 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.51513 -40.96135 -38.69400 -36.83101 -35.58049 -34.60962 -34.00335 -33.44849 -31.35667 -29.10236 -27.29875 -26.90297 -25.55581 -24.17595 -22.94813 -22.53428 -21.17953 -20.46090 -18.69262 -18.52179 -17.76402 -17.33995 -17.15821 -16.84821 -16.36143 -16.19867 -15.96430 -15.52430 -15.35259 -15.17012 -14.62024 -14.44719 -13.99681 -13.84726 -13.68222 -13.43251 -13.38155 -13.26469 -13.13355 -12.98207 -12.59393 -12.43417 -12.36287 -11.98835 -11.90241 -11.72331 -11.49439 -11.11142 -10.69816 -10.67316 -10.45201 -9.81660 -8.75549 -8.50806 -6.02040 -0.46045 1.12671 1.21289 1.31510 1.40102 1.77425 1.97544 2.17601 2.47398 2.65992 2.90462 3.16531 3.71558 3.91646 4.04124 4.07637 4.13569 4.19127 4.32136 4.34943 4.36011 4.42862 4.53024 4.54177 4.57560 4.69623 4.74953 4.77820 4.82455 4.87912 4.99112 5.00920 5.16020 5.27570 5.31418 5.35082 5.47527 5.65475 6.01478 6.22011 6.22137 6.38283 6.95186 7.37726 7.73628 8.63690 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.004313 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.250783 B = 6489.867042 C = 7104.243078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C -0.009 4.009 4 C -0.212 4.212 5 C -0.161 4.161 6 C -0.031 4.031 7 C -0.014 4.014 8 C -0.185 4.185 9 C 0.492 3.508 10 O -0.627 6.627 11 N -0.448 5.448 12 C -0.326 4.326 13 H 0.072 0.928 14 C 0.037 3.963 15 N -0.885 5.885 16 Si 0.925 3.075 17 H -0.255 1.255 18 H -0.281 1.281 19 H -0.266 1.266 20 C 0.089 3.911 21 C 0.060 3.940 22 O -0.397 6.397 23 C 0.027 3.973 24 O -0.191 6.191 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.126 0.874 30 H 0.184 0.816 31 H 0.179 0.821 32 H 0.163 0.837 33 H 0.116 0.884 34 H 0.279 0.721 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.040 0.960 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.760 -1.751 12.071 12.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.061 4.061 4 C -0.231 4.231 5 C -0.180 4.180 6 C -0.080 4.080 7 C -0.035 4.035 8 C -0.206 4.206 9 C 0.287 3.713 10 O -0.518 6.518 11 N -0.165 5.165 12 C -0.454 4.454 13 H 0.090 0.910 14 C -0.168 4.168 15 N -0.521 5.521 16 Si 0.751 3.249 17 H -0.181 1.181 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.034 4.034 21 C -0.017 4.017 22 O -0.316 6.316 23 C -0.069 4.069 24 O -0.088 6.088 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.144 0.856 30 H 0.202 0.798 31 H 0.196 0.804 32 H 0.180 0.820 33 H 0.134 0.866 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.749 -1.594 11.681 11.813 hybrid contribution -0.160 0.568 -0.717 0.929 sum 0.589 -1.027 10.964 11.028 Atomic orbital electron populations 1.21784 0.93219 1.03489 1.02015 1.20364 0.96942 0.85676 1.05463 1.23565 1.02148 0.96459 0.83894 1.21839 1.07035 0.93789 1.00436 1.22658 1.03001 1.00350 0.91986 1.20032 1.08414 0.85072 0.94470 1.20634 0.95488 0.95951 0.91451 1.22073 1.03776 1.00351 0.94401 1.17215 0.83569 0.87583 0.82886 1.90634 1.51248 1.33278 1.76671 1.43663 1.54209 1.14414 1.04234 1.18670 1.30312 0.84778 1.11646 0.91029 1.25803 0.96484 0.99628 0.94934 1.69826 1.37004 1.31907 1.13332 0.86180 0.78634 0.80855 0.79271 1.18104 1.20774 1.19065 1.21967 0.95431 0.91847 0.94151 1.22789 0.96045 0.88117 0.94772 1.88161 1.27996 1.43247 1.72239 1.22856 0.82872 1.02000 0.99158 1.84109 1.65125 1.23066 1.36486 0.89456 0.91374 0.94447 0.90460 0.85618 0.79825 0.80353 0.82016 0.86632 0.91090 0.91403 0.88573 0.90135 0.93990 0.92344 0.94179 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.89 71.98 0.71 -1.80 16 2 C -0.05 -0.88 6.46 29.85 0.19 -0.69 16 3 C -0.01 -0.25 6.56 24.98 0.16 -0.08 16 4 C -0.21 -4.83 10.76 22.06 0.24 -4.59 16 5 C -0.16 -4.22 10.90 22.72 0.25 -3.97 16 6 C -0.03 -1.08 6.84 23.03 0.16 -0.92 16 7 C -0.01 -0.55 9.38 22.51 0.21 -0.34 16 8 C -0.19 -8.52 8.73 22.47 0.20 -8.32 16 9 C 0.49 24.68 7.38 85.01 0.63 25.31 16 10 O -0.63 -31.98 15.76 -4.80 -0.08 -32.05 16 11 N -0.45 -22.98 2.18 -645.83 -1.41 -24.39 16 12 C -0.33 -18.28 8.36 84.13 0.70 -17.57 16 13 H 0.07 4.38 6.94 -2.91 -0.02 4.36 16 14 C 0.04 2.04 5.30 84.96 0.45 2.49 16 15 N -0.88 -50.98 13.95 21.68 0.30 -50.68 16 16 Si 0.93 43.09 25.01 68.60 1.72 44.80 16 17 H -0.26 -11.08 6.66 99.48 0.66 -10.42 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 C 0.09 4.03 4.62 86.38 0.40 4.43 16 21 C 0.06 2.43 6.28 71.98 0.45 2.88 16 22 O -0.40 -17.58 10.17 -148.98 -1.52 -19.09 16 23 C 0.03 0.89 11.01 113.37 1.25 2.14 16 24 O -0.19 -6.83 10.19 -6.42 -0.07 -6.90 16 25 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.18 3.57 8.06 -2.91 -0.02 3.54 16 32 H 0.16 5.72 7.49 -2.91 -0.02 5.70 16 33 H 0.12 5.70 6.08 -2.91 -0.02 5.68 16 34 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.07 3.14 3.06 -2.38 -0.01 3.13 16 36 H 0.10 4.08 7.49 -2.38 -0.02 4.06 16 37 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -70.68 347.52 5.93 -64.74 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.98 Total: 24.62 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 6.00 Total: -1.05 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -1.11 Total: -75.07 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -1.66 Total: -58.05 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.72 Total: 44.80 kcal Total: -70.68 5.93 -64.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493226594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.833 kcal (2) G-P(sol) polarization free energy of solvation -70.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds