Wall clock time and date at job start Tue Mar 31 2020 06:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99998 * 2 1 4 4 H 1.48498 * 109.47199 * 270.00270 * 3 2 1 5 5 H 1.48500 * 109.47216 * 29.99941 * 3 2 1 6 6 H 1.48493 * 109.47310 * 149.99687 * 3 2 1 7 7 C 1.37872 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00220 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99864 * 359.97438 * 7 2 1 10 10 C 1.53035 * 109.45964 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31327 * 181.37529 * 10 9 7 12 12 N 1.46926 * 108.89109 * 305.29292 * 11 10 9 13 13 C 1.34773 * 120.63302 * 233.67613 * 12 11 10 14 14 O 1.21283 * 119.99890 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00452 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47382 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46922 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.46922 * 180.02562 * 17 16 15 19 19 F 1.39904 * 109.47303 * 60.00412 * 18 17 16 20 20 F 1.39900 * 109.47177 * 179.97438 * 18 17 16 21 21 F 1.39901 * 109.47493 * 300.00429 * 18 17 16 22 22 C 1.47207 * 118.55531 * 53.54119 * 12 11 10 23 23 C 1.53038 * 109.44867 * 300.06441 * 9 7 2 24 24 H 0.97004 * 120.00396 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.45450 * 60.03070 * 9 7 2 26 26 H 1.09003 * 109.49576 * 61.42198 * 10 9 7 27 27 H 1.09000 * 109.52700 * 301.34246 * 10 9 7 28 28 H 1.09002 * 109.58786 * 65.15336 * 11 10 9 29 29 H 1.08996 * 109.58870 * 185.43616 * 11 10 9 30 30 H 1.08998 * 109.46962 * 300.00024 * 15 13 12 31 31 H 1.09003 * 109.46750 * 59.99342 * 15 13 12 32 32 H 1.08998 * 109.47350 * 300.00103 * 16 15 13 33 33 H 1.09004 * 109.46747 * 60.00319 * 16 15 13 34 34 H 1.08998 * 109.47498 * 300.00388 * 17 16 15 35 35 H 1.08996 * 109.47166 * 60.00703 * 17 16 15 36 36 H 1.08996 * 109.53610 * 186.67231 * 22 12 11 37 37 H 1.09002 * 109.68003 * 66.36699 * 22 12 11 38 38 H 1.09002 * 109.49557 * 298.56984 * 23 9 7 39 39 H 1.08996 * 109.50003 * 58.66881 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2457 -3.6622 0.0015 11 6 1.4766 -4.9866 -0.0321 12 7 0.5235 -5.0117 1.0858 13 6 0.5160 -6.0383 1.9590 14 8 1.3007 -6.9534 1.8257 15 6 -0.4681 -6.0498 3.1002 16 6 -0.2670 -7.3165 3.9344 17 6 -1.2657 -7.3278 5.0934 18 6 -1.0642 -8.5941 5.9280 19 9 0.2394 -8.6155 6.4356 20 9 -1.9770 -8.6042 6.9881 21 9 -1.2700 -9.7203 5.1239 22 6 -0.4193 -3.8906 1.2320 23 6 0.3706 -2.5782 1.2510 24 1 -0.4851 0.8400 -0.0004 25 1 0.6245 -2.5575 -0.8884 26 1 2.8564 -3.6187 0.9033 27 1 2.8879 -3.5921 -0.8765 28 1 0.9363 -5.0717 -0.9749 29 1 2.1754 -5.8175 0.0649 30 1 -0.3081 -5.1724 3.7268 31 1 -1.4836 -6.0333 2.7044 32 1 -0.4272 -8.1937 3.3076 33 1 0.7485 -7.3333 4.3302 34 1 -1.1051 -6.4506 5.7201 35 1 -2.2813 -7.3107 4.6980 36 1 -0.9716 -3.9982 2.1655 37 1 -1.1160 -3.8852 0.3938 38 1 0.9986 -2.5448 2.1413 39 1 -0.3219 -1.7365 1.2619 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541050135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:03 Heat of formation + Delta-G solvation = -219.008152 kcal Electronic energy + Delta-G solvation = -23760.186148 eV Core-core repulsion = 19672.531968 eV Total energy + Delta-G solvation = -4087.654180 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.28142 -47.79418 -47.74398 -39.79106 -36.99917 -35.08953 -33.55801 -31.50292 -30.30077 -29.42708 -26.33478 -24.65268 -22.94513 -22.42664 -21.71377 -19.85107 -18.74471 -18.55921 -18.32754 -17.57283 -16.78275 -16.13593 -15.95920 -15.33606 -14.79806 -14.68714 -14.58741 -14.23233 -14.11465 -13.92002 -13.89628 -13.48152 -13.25799 -13.00554 -12.85964 -12.72602 -12.55164 -12.04247 -11.93423 -11.79228 -11.42666 -11.33052 -11.04536 -10.98803 -10.67414 -10.43301 -10.16062 -9.73056 -9.45743 -9.22061 -8.98413 -8.42975 -8.06336 -6.08398 -4.14412 2.56233 2.91663 3.24880 3.32152 3.34344 3.35889 3.63580 3.83883 3.84543 4.36822 4.56334 4.68766 4.86409 5.07105 5.15334 5.18121 5.21432 5.40527 5.60560 5.76311 5.82042 5.90281 6.00509 6.02947 6.11428 6.22349 6.40243 6.60443 6.83951 6.98021 7.08011 7.21170 7.60907 7.85887 7.87115 7.98090 8.34857 8.49471 8.89051 9.51052 10.97140 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.028124 B = 0.002961 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.356910 B = 9454.787716 C = 9916.512756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.600 5.600 13 C 0.510 3.490 14 O -0.559 6.559 15 C -0.136 4.136 16 C -0.109 4.109 17 C -0.167 4.167 18 C 0.452 3.548 19 F -0.183 7.183 20 F -0.188 7.188 21 F -0.184 7.184 22 C 0.102 3.898 23 C -0.125 4.125 24 H 0.260 0.740 25 H 0.027 0.973 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.849 -12.650 9.224 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.011 4.011 12 N -0.333 5.333 13 C 0.298 3.702 14 O -0.439 6.439 15 C -0.176 4.176 16 C -0.147 4.147 17 C -0.205 4.205 18 C 0.398 3.602 19 F -0.165 7.165 20 F -0.170 7.170 21 F -0.165 7.165 22 C -0.020 4.020 23 C -0.163 4.163 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.587 -13.016 9.163 16.869 hybrid contribution 0.377 0.924 0.156 1.011 sum -5.209 -12.091 9.318 16.130 Atomic orbital electron populations 1.69827 1.05846 1.26503 1.50966 1.24955 0.94882 0.99075 0.95041 0.86610 0.79912 0.83457 0.78130 1.20708 1.21233 1.19971 1.21210 0.92976 0.90569 1.50270 0.92701 1.18633 0.92657 0.91756 0.93962 1.22005 0.98914 0.94217 1.01008 1.21691 0.91847 0.99712 0.87893 1.48327 1.36022 1.21050 1.27873 1.20443 0.84674 0.81868 0.83205 1.90656 1.41759 1.36477 1.75006 1.21597 1.00104 0.99489 0.96434 1.21337 0.99258 0.99082 0.94982 1.22935 1.04507 0.94351 0.98746 1.20629 0.73747 0.86866 0.78973 1.93195 1.38139 1.96903 1.88216 1.93183 1.67405 1.96924 1.59443 1.93189 1.94669 1.55518 1.73148 1.22108 0.91623 0.87500 1.00719 1.22026 1.00088 0.94569 0.99635 0.92961 0.95460 0.92979 0.92136 0.92245 0.90376 0.88426 0.88693 0.89838 0.89766 0.87059 0.87136 0.91430 0.91839 0.94227 0.87694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.79 11.31 55.43 0.63 -23.16 16 2 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 3 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.51 -13.32 8.56 -34.44 -0.29 -13.62 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.11 2.06 -91.73 -0.19 0.92 16 10 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 11 C 0.11 1.97 6.42 -3.71 -0.02 1.94 16 12 N -0.60 -10.12 2.98 -172.54 -0.52 -10.63 16 13 C 0.51 8.13 7.70 -10.99 -0.08 8.05 16 14 O -0.56 -10.63 15.39 5.55 0.09 -10.55 16 15 C -0.14 -1.49 4.05 -27.88 -0.11 -1.61 16 16 C -0.11 -1.11 4.26 -26.73 -0.11 -1.22 16 17 C -0.17 -1.24 5.26 -26.73 -0.14 -1.38 16 18 C 0.45 4.26 3.16 37.16 0.12 4.37 16 19 F -0.18 -1.99 16.80 2.25 0.04 -1.96 16 20 F -0.19 -1.82 17.32 2.25 0.04 -1.78 16 21 F -0.18 -1.95 16.80 2.25 0.04 -1.92 16 22 C 0.10 1.68 6.35 -3.56 -0.02 1.65 16 23 C -0.12 -2.60 5.16 -26.61 -0.14 -2.74 16 24 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.39 7.00 -51.93 -0.36 1.03 16 30 H 0.10 0.96 7.70 -51.93 -0.40 0.56 16 31 H 0.09 0.84 7.96 -51.93 -0.41 0.43 16 32 H 0.08 0.93 7.76 -51.93 -0.40 0.53 16 33 H 0.08 0.98 7.76 -51.93 -0.40 0.58 16 34 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.89 5.97 -51.93 -0.31 0.58 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.11 2.45 6.03 -51.93 -0.31 2.13 16 LS Contribution 326.40 15.07 4.92 4.92 Total: -1.00 -28.97 326.40 -6.56 -35.53 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.53 Total: -1.15 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -1.24 Total: -4.71 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.11 Total: -33.80 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.11 Total: -5.66 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.97 -6.56 -35.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541050135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.477 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds