Wall clock time and date at job start Tue Mar 31 2020 06:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99998 * 2 1 4 4 H 1.48498 * 109.47199 * 270.00270 * 3 2 1 5 5 H 1.48500 * 109.47216 * 29.99941 * 3 2 1 6 6 H 1.48493 * 109.47310 * 149.99687 * 3 2 1 7 7 C 1.37872 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00220 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99864 * 359.97438 * 7 2 1 10 10 C 1.53035 * 109.45964 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31327 * 181.37529 * 10 9 7 12 12 N 1.46926 * 108.89109 * 305.29292 * 11 10 9 13 13 C 1.34773 * 120.63302 * 233.67613 * 12 11 10 14 14 O 1.21283 * 119.99890 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00452 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47382 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46922 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.46922 * 180.02562 * 17 16 15 19 19 F 1.39904 * 109.47303 * 60.00412 * 18 17 16 20 20 F 1.39900 * 109.47177 * 179.97438 * 18 17 16 21 21 F 1.39901 * 109.47493 * 300.00429 * 18 17 16 22 22 C 1.47207 * 118.55531 * 53.54119 * 12 11 10 23 23 C 1.53038 * 109.44867 * 300.06441 * 9 7 2 24 24 H 0.97004 * 120.00396 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.45450 * 60.03070 * 9 7 2 26 26 H 1.09003 * 109.49576 * 61.42198 * 10 9 7 27 27 H 1.09000 * 109.52700 * 301.34246 * 10 9 7 28 28 H 1.09002 * 109.58786 * 65.15336 * 11 10 9 29 29 H 1.08996 * 109.58870 * 185.43616 * 11 10 9 30 30 H 1.08998 * 109.46962 * 300.00024 * 15 13 12 31 31 H 1.09003 * 109.46750 * 59.99342 * 15 13 12 32 32 H 1.08998 * 109.47350 * 300.00103 * 16 15 13 33 33 H 1.09004 * 109.46747 * 60.00319 * 16 15 13 34 34 H 1.08998 * 109.47498 * 300.00388 * 17 16 15 35 35 H 1.08996 * 109.47166 * 60.00703 * 17 16 15 36 36 H 1.08996 * 109.53610 * 186.67231 * 22 12 11 37 37 H 1.09002 * 109.68003 * 66.36699 * 22 12 11 38 38 H 1.09002 * 109.49557 * 298.56984 * 23 9 7 39 39 H 1.08996 * 109.50003 * 58.66881 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2457 -3.6622 0.0015 11 6 1.4766 -4.9866 -0.0321 12 7 0.5235 -5.0117 1.0858 13 6 0.5160 -6.0383 1.9590 14 8 1.3007 -6.9534 1.8257 15 6 -0.4681 -6.0498 3.1002 16 6 -0.2670 -7.3165 3.9344 17 6 -1.2657 -7.3278 5.0934 18 6 -1.0642 -8.5941 5.9280 19 9 0.2394 -8.6155 6.4356 20 9 -1.9770 -8.6042 6.9881 21 9 -1.2700 -9.7203 5.1239 22 6 -0.4193 -3.8906 1.2320 23 6 0.3706 -2.5782 1.2510 24 1 -0.4851 0.8400 -0.0004 25 1 0.6245 -2.5575 -0.8884 26 1 2.8564 -3.6187 0.9033 27 1 2.8879 -3.5921 -0.8765 28 1 0.9363 -5.0717 -0.9749 29 1 2.1754 -5.8175 0.0649 30 1 -0.3081 -5.1724 3.7268 31 1 -1.4836 -6.0333 2.7044 32 1 -0.4272 -8.1937 3.3076 33 1 0.7485 -7.3333 4.3302 34 1 -1.1051 -6.4506 5.7201 35 1 -2.2813 -7.3107 4.6980 36 1 -0.9716 -3.9982 2.1655 37 1 -1.1160 -3.8852 0.3938 38 1 0.9986 -2.5448 2.1413 39 1 -0.3219 -1.7365 1.2619 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541050135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:03 Heat of formation + Delta-G solvation = -234.299310 kcal Electronic energy + Delta-G solvation = -23760.849222 eV Core-core repulsion = 19672.531968 eV Total energy + Delta-G solvation = -4088.317254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.03394 -48.54036 -48.52764 -41.09947 -38.47838 -35.92962 -35.30046 -33.12926 -31.79820 -30.41740 -28.00316 -25.74709 -24.42214 -23.79946 -22.65228 -21.31386 -19.77053 -19.49108 -19.20905 -18.68042 -18.27164 -17.62202 -16.90573 -16.65260 -16.44470 -15.76020 -15.44990 -15.11660 -14.95043 -14.91789 -14.81953 -14.69819 -14.68595 -14.53616 -14.19715 -13.91554 -13.70270 -13.18510 -13.09241 -13.00511 -12.80448 -12.77743 -12.43142 -12.30772 -12.12893 -11.89531 -11.79858 -11.45817 -10.99243 -10.94868 -10.63374 -10.37220 -9.51002 -8.07098 -6.19774 1.41807 1.44599 1.52910 1.69284 1.85201 2.16472 2.45005 2.92442 3.08614 3.16760 3.19603 3.60301 3.99445 4.03682 4.11632 4.27677 4.30197 4.43290 4.49564 4.54320 4.57910 4.61709 4.71054 4.81532 4.89512 5.00973 5.05289 5.19730 5.23367 5.29014 5.45754 5.58199 5.67503 6.01129 6.17046 6.41326 6.57971 6.89318 7.23402 7.47846 8.96107 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.028124 B = 0.002961 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.356910 B = 9454.787716 C = 9916.512756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.020 3.980 3 Si 0.946 3.054 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.044 0.956 9 C 0.045 3.955 10 C -0.113 4.113 11 C 0.116 3.884 12 N -0.606 5.606 13 C 0.504 3.496 14 O -0.594 6.594 15 C -0.130 4.130 16 C -0.105 4.105 17 C -0.156 4.156 18 C 0.448 3.552 19 F -0.195 7.195 20 F -0.189 7.189 21 F -0.194 7.194 22 C 0.113 3.887 23 C -0.117 4.117 24 H 0.262 0.738 25 H 0.003 0.997 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.029 0.971 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.172 -12.590 10.220 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.773 3.227 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.062 0.938 9 C 0.026 3.974 10 C -0.152 4.152 11 C -0.007 4.007 12 N -0.338 5.338 13 C 0.295 3.705 14 O -0.476 6.476 15 C -0.169 4.169 16 C -0.143 4.143 17 C -0.194 4.194 18 C 0.394 3.606 19 F -0.177 7.177 20 F -0.171 7.171 21 F -0.175 7.175 22 C -0.008 4.008 23 C -0.156 4.156 24 H 0.071 0.929 25 H 0.021 0.979 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.151 0.849 35 H 0.156 0.844 36 H 0.128 0.872 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.918 -12.960 10.166 17.865 hybrid contribution 0.834 0.883 -0.175 1.227 sum -6.084 -12.076 9.991 16.813 Atomic orbital electron populations 1.69928 1.06651 1.27127 1.51180 1.25583 0.95707 1.01746 0.94871 0.85740 0.78786 0.80160 0.78033 1.20527 1.20626 1.19965 1.21546 0.92816 0.92412 1.50649 0.93779 1.18611 0.93059 0.91666 0.94029 1.21846 0.98349 0.94580 1.00392 1.21525 0.92160 0.97951 0.89087 1.48399 1.35910 1.21618 1.27880 1.21358 0.84865 0.80698 0.83603 1.90644 1.43430 1.37708 1.75851 1.21674 1.00036 1.00503 0.94677 1.21232 0.99131 0.98318 0.95638 1.22937 1.05011 0.93806 0.97599 1.20999 0.73168 0.87392 0.79067 1.93173 1.39126 1.96971 1.88443 1.93180 1.67339 1.96944 1.59602 1.93171 1.94671 1.56324 1.73370 1.22011 0.90827 0.84809 1.03184 1.21795 0.99417 0.96516 0.97836 0.92879 0.97913 0.94123 0.92226 0.91403 0.90559 0.86386 0.85452 0.91174 0.91756 0.84891 0.84411 0.87154 0.91477 0.95178 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.58 11.31 21.45 0.24 -48.34 16 2 C 0.02 1.05 5.30 84.65 0.45 1.50 16 3 Si 0.95 41.93 29.54 68.60 2.03 43.95 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.54 -28.32 8.56 25.60 0.22 -28.10 16 8 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 9 C 0.04 2.08 2.06 -11.51 -0.02 2.06 16 10 C -0.11 -4.57 5.30 30.67 0.16 -4.40 16 11 C 0.12 4.04 6.42 86.36 0.55 4.59 16 12 N -0.61 -19.34 2.98 -818.20 -2.44 -21.78 16 13 C 0.50 15.03 7.70 87.66 0.68 15.71 16 14 O -0.59 -22.12 15.39 -3.04 -0.05 -22.16 16 15 C -0.13 -2.35 4.05 29.85 0.12 -2.23 16 16 C -0.11 -1.89 4.26 30.59 0.13 -1.76 16 17 C -0.16 -1.77 5.26 30.59 0.16 -1.61 16 18 C 0.45 7.57 3.16 71.98 0.23 7.80 16 19 F -0.20 -4.06 16.80 44.97 0.76 -3.30 16 20 F -0.19 -3.27 17.32 44.97 0.78 -2.49 16 21 F -0.19 -3.87 16.80 44.97 0.76 -3.12 16 22 C 0.11 3.43 6.35 86.31 0.55 3.98 16 23 C -0.12 -4.81 5.16 30.67 0.16 -4.65 16 24 H 0.26 13.36 8.31 -92.70 -0.77 12.59 16 25 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 26 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.08 2.70 7.00 -2.39 -0.02 2.69 16 30 H 0.12 1.75 7.70 -2.39 -0.02 1.73 16 31 H 0.13 1.57 7.96 -2.39 -0.02 1.55 16 32 H 0.07 1.45 7.76 -2.39 -0.02 1.43 16 33 H 0.06 1.41 7.76 -2.39 -0.02 1.40 16 34 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.11 2.41 5.97 -2.39 -0.01 2.40 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 39 H 0.08 3.76 6.03 -2.39 -0.01 3.75 16 Total: -1.00 -63.85 326.40 6.50 -57.35 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.05 Total: 7.00 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 3.38 Total: -7.11 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -2.20 Total: -70.11 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.05 Total: -22.16 kcal Atomic # 9 Polarization: -11.20 SS G_CDS: 2.29 Total: -8.91 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -63.85 6.50 -57.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541050135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.950 kcal (2) G-P(sol) polarization free energy of solvation -63.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds