Wall clock time and date at job start Tue Mar 31 2020 06:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47311 * 2 1 4 4 N 1.29027 * 124.91671 * 90.00083 * 3 2 1 5 5 C 1.31783 * 117.12207 * 179.97438 * 4 3 2 6 6 C 1.50705 * 122.74284 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47244 * 305.02270 * 6 5 4 8 8 N 1.46906 * 109.46978 * 180.02562 * 7 6 5 9 9 C 1.46901 * 110.99793 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46769 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47069 * 304.99474 * 10 9 8 12 12 C 1.47199 * 109.47256 * 64.99890 * 10 9 8 13 13 N 8.98527 * 116.41646 * 220.07493 * 3 1 2 14 14 C 1.53006 * 109.46846 * 185.00040 * 10 9 8 15 15 C 1.50699 * 109.46678 * 174.99845 * 14 10 9 16 16 H 1.07994 * 120.00629 * 0.02562 * 15 14 10 17 17 C 1.37887 * 119.99470 * 179.97438 * 15 14 10 18 18 N 1.31510 * 120.00112 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99747 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47380 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47489 * 119.99780 * 19 17 15 22 22 H 1.48504 * 109.46999 * 239.99819 * 19 17 15 23 23 C 1.33636 * 114.50295 * 0.23192 * 5 4 3 24 24 S 1.70980 * 124.91655 * 270.00044 * 3 2 1 25 25 H 1.09004 * 109.47116 * 300.00173 * 1 2 3 26 26 H 1.09004 * 109.46742 * 59.99802 * 1 2 3 27 27 H 1.08995 * 109.47342 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47116 * 239.99827 * 2 1 3 29 29 H 1.08993 * 109.47246 * 120.00307 * 2 1 3 30 30 H 1.09005 * 109.46616 * 185.02826 * 6 5 4 31 31 H 1.09002 * 109.47100 * 65.02964 * 6 5 4 32 32 H 1.08995 * 109.46859 * 60.00696 * 7 6 5 33 33 H 1.09002 * 109.47639 * 300.00364 * 7 6 5 34 34 H 1.00898 * 110.99995 * 303.95410 * 8 7 6 35 35 H 1.09002 * 109.47401 * 59.99808 * 9 8 7 36 36 H 1.09001 * 109.46874 * 299.99821 * 9 8 7 37 37 H 1.09004 * 109.46746 * 294.99703 * 14 10 9 38 38 H 1.08998 * 109.47205 * 54.99872 * 14 10 9 39 39 H 0.96996 * 120.00103 * 180.02562 * 18 17 15 40 40 H 1.08003 * 126.03697 * 179.76372 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7143 3.3479 0.8793 6 6 3.0404 4.2715 2.0246 7 6 1.8269 4.3853 2.9494 8 7 2.1446 5.2861 4.0655 9 6 1.0001 5.4192 4.9767 10 6 1.3681 6.3633 6.1231 11 1 2.2738 6.0048 6.6125 12 6 1.6008 7.7154 5.5899 13 7 1.7805 8.7579 5.1806 14 6 0.2230 6.4049 7.1371 15 6 0.6338 7.2366 8.3247 16 1 1.6133 7.6905 8.3534 17 6 -0.2415 7.4190 9.3744 18 7 -1.4349 6.8675 9.3389 19 14 0.2673 8.4505 10.8463 20 1 1.6487 8.9559 10.6428 21 1 -0.6636 9.5983 10.9921 22 1 0.2216 7.6170 12.0745 23 6 2.8382 3.7116 -0.4007 24 16 2.3586 2.3435 -1.4020 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.2941 5.2575 1.6352 31 1 3.8870 3.8726 2.5833 32 1 1.5732 3.3993 3.3388 33 1 0.9802 4.7842 2.3907 34 1 2.9660 4.9727 4.5606 35 1 0.7412 4.4404 5.3804 36 1 0.1474 5.8248 4.4321 37 1 -0.6584 6.8462 6.6717 38 1 -0.0084 5.3917 7.4656 39 1 -2.0507 6.9961 10.0772 40 1 3.1741 4.6738 -0.7581 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567262373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:25 Heat of formation + Delta-G solvation = 43.245698 kcal Electronic energy + Delta-G solvation = -19662.890600 eV Core-core repulsion = 16603.510963 eV Total energy + Delta-G solvation = -3059.379637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.23620 -37.41365 -35.61874 -34.52384 -33.56865 -32.16575 -30.68745 -28.69175 -26.35048 -25.61378 -23.42797 -22.27979 -21.88396 -21.48263 -19.95694 -17.84429 -16.96375 -16.40809 -15.92326 -15.27512 -15.06738 -14.91127 -14.71421 -14.41084 -14.13225 -13.67790 -13.35856 -13.25402 -12.71674 -12.64873 -12.34482 -12.20978 -12.02825 -11.91314 -11.58887 -11.50096 -11.47733 -11.29478 -11.09597 -10.94722 -10.67364 -10.49160 -10.21790 -9.86717 -9.66254 -9.53214 -9.20305 -8.93825 -8.45210 -8.27213 -6.08503 -4.11469 0.45025 1.09374 1.46901 2.53510 3.29344 3.37522 3.42315 3.72141 3.77928 3.87168 4.24109 4.43165 4.55039 4.74113 4.82095 4.92092 4.97181 5.04460 5.09580 5.20971 5.29697 5.39204 5.43521 5.51879 5.56358 5.60954 5.76406 5.78759 5.87775 5.97901 6.05153 6.12425 6.41721 6.52153 7.11278 7.44315 7.49902 7.53098 7.55887 7.87143 8.24623 8.61301 8.93685 9.53949 11.02500 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.027415 B = 0.002405 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.076792 B =11638.727127 C =12366.366660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.055 3.945 4 N -0.465 5.465 5 C 0.078 3.922 6 C -0.043 4.043 7 C 0.069 3.931 8 N -0.695 5.695 9 C 0.068 3.932 10 C 0.009 3.991 11 H 0.099 0.901 12 C 0.256 3.744 13 N -0.480 5.480 14 C 0.031 3.969 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.258 4.258 24 S 0.104 5.896 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.341 0.659 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.262 0.738 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.868 -16.073 -21.641 27.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.224 4.224 4 N -0.180 5.180 5 C -0.054 4.054 6 C -0.084 4.084 7 C -0.061 4.061 8 N -0.326 5.326 9 C -0.062 4.062 10 C -0.013 4.013 11 H 0.117 0.883 12 C -0.060 4.060 13 N -0.157 5.157 14 C -0.008 4.008 15 C -0.563 4.563 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.397 4.397 24 S 0.359 5.641 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.159 0.841 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 6.681 -14.370 -23.093 28.007 hybrid contribution 0.326 -0.008 2.129 2.153 sum 7.007 -14.378 -20.964 26.369 Atomic orbital electron populations 1.21774 0.93324 1.02665 1.02854 1.20234 0.96883 0.87489 1.04232 1.27105 1.02679 1.01791 0.90838 1.66082 1.14544 1.05855 1.31474 1.20288 0.99681 0.91163 0.94292 1.20187 0.98841 0.96791 0.92544 1.21780 0.96919 0.95071 0.92325 1.60523 1.07111 1.52458 1.12526 1.22051 0.93327 0.98334 0.92524 1.19221 1.03562 0.83387 0.95131 0.88289 1.28788 0.91638 0.94494 0.91129 1.80901 1.10498 1.12691 1.11611 1.19176 0.91207 0.98728 0.91664 1.21189 1.00907 1.31600 1.02628 0.92427 1.24964 0.94862 0.95708 0.98519 1.69947 1.06679 1.44205 1.32225 0.86533 0.78826 0.80172 0.82537 1.19670 1.20971 1.20867 1.26844 1.12852 1.04276 0.95706 1.83933 1.60990 1.06045 1.13174 0.91711 0.92419 0.91309 0.89741 0.88693 0.89367 0.90108 0.94070 0.91315 0.84140 0.93193 0.90600 0.95564 0.94432 0.92861 0.80548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.53 16 2 C -0.05 -0.31 6.52 -27.89 -0.18 -0.49 16 3 C 0.05 0.51 6.64 -13.46 -0.09 0.42 16 4 N -0.47 -5.34 10.34 -8.05 -0.08 -5.42 16 5 C 0.08 0.84 6.08 -84.22 -0.51 0.33 16 6 C -0.04 -0.45 5.97 -27.88 -0.17 -0.62 16 7 C 0.07 0.83 5.59 -3.82 -0.02 0.80 16 8 N -0.70 -9.27 6.20 -113.78 -0.71 -9.97 16 9 C 0.07 1.03 5.05 -3.82 -0.02 1.01 16 10 C 0.01 0.17 2.35 -93.40 -0.22 -0.05 16 11 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 12 C 0.26 5.44 13.66 -20.82 -0.28 5.16 16 13 N -0.48 -11.07 18.53 42.09 0.78 -10.29 16 14 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 15 C -0.53 -14.11 8.60 -34.44 -0.30 -14.41 16 16 H 0.06 1.54 7.59 -52.49 -0.40 1.15 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 19 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.26 -2.39 11.07 29.12 0.32 -2.07 16 24 S 0.10 0.83 23.18 -107.50 -2.49 -1.66 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.34 4.05 8.73 -39.29 -0.34 3.71 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.18 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 360.19 15.07 5.43 5.43 Total: -1.00 -31.62 360.19 -8.89 -40.51 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.21 Total: -1.79 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.32 Total: -8.24 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.73 Total: -50.70 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.49 Total: -1.66 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.62 -8.89 -40.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567262373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.753 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds