Wall clock time and date at job start Tue Mar 31 2020 06:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47311 * 2 1 4 4 N 1.29027 * 124.91671 * 90.00083 * 3 2 1 5 5 C 1.31783 * 117.12207 * 179.97438 * 4 3 2 6 6 C 1.50705 * 122.74284 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47244 * 305.02270 * 6 5 4 8 8 N 1.46906 * 109.46978 * 180.02562 * 7 6 5 9 9 C 1.46901 * 110.99793 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46769 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47069 * 304.99474 * 10 9 8 12 12 C 1.47199 * 109.47256 * 64.99890 * 10 9 8 13 13 N 8.98527 * 116.41646 * 220.07493 * 3 1 2 14 14 C 1.53006 * 109.46846 * 185.00040 * 10 9 8 15 15 C 1.50699 * 109.46678 * 174.99845 * 14 10 9 16 16 H 1.07994 * 120.00629 * 0.02562 * 15 14 10 17 17 C 1.37887 * 119.99470 * 179.97438 * 15 14 10 18 18 N 1.31510 * 120.00112 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99747 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47380 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47489 * 119.99780 * 19 17 15 22 22 H 1.48504 * 109.46999 * 239.99819 * 19 17 15 23 23 C 1.33636 * 114.50295 * 0.23192 * 5 4 3 24 24 S 1.70980 * 124.91655 * 270.00044 * 3 2 1 25 25 H 1.09004 * 109.47116 * 300.00173 * 1 2 3 26 26 H 1.09004 * 109.46742 * 59.99802 * 1 2 3 27 27 H 1.08995 * 109.47342 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47116 * 239.99827 * 2 1 3 29 29 H 1.08993 * 109.47246 * 120.00307 * 2 1 3 30 30 H 1.09005 * 109.46616 * 185.02826 * 6 5 4 31 31 H 1.09002 * 109.47100 * 65.02964 * 6 5 4 32 32 H 1.08995 * 109.46859 * 60.00696 * 7 6 5 33 33 H 1.09002 * 109.47639 * 300.00364 * 7 6 5 34 34 H 1.00898 * 110.99995 * 303.95410 * 8 7 6 35 35 H 1.09002 * 109.47401 * 59.99808 * 9 8 7 36 36 H 1.09001 * 109.46874 * 299.99821 * 9 8 7 37 37 H 1.09004 * 109.46746 * 294.99703 * 14 10 9 38 38 H 1.08998 * 109.47205 * 54.99872 * 14 10 9 39 39 H 0.96996 * 120.00103 * 180.02562 * 18 17 15 40 40 H 1.08003 * 126.03697 * 179.76372 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7143 3.3479 0.8793 6 6 3.0404 4.2715 2.0246 7 6 1.8269 4.3853 2.9494 8 7 2.1446 5.2861 4.0655 9 6 1.0001 5.4192 4.9767 10 6 1.3681 6.3633 6.1231 11 1 2.2738 6.0048 6.6125 12 6 1.6008 7.7154 5.5899 13 7 1.7805 8.7579 5.1806 14 6 0.2230 6.4049 7.1371 15 6 0.6338 7.2366 8.3247 16 1 1.6133 7.6905 8.3534 17 6 -0.2415 7.4190 9.3744 18 7 -1.4349 6.8675 9.3389 19 14 0.2673 8.4505 10.8463 20 1 1.6487 8.9559 10.6428 21 1 -0.6636 9.5983 10.9921 22 1 0.2216 7.6170 12.0745 23 6 2.8382 3.7116 -0.4007 24 16 2.3586 2.3435 -1.4020 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.2941 5.2575 1.6352 31 1 3.8870 3.8726 2.5833 32 1 1.5732 3.3993 3.3388 33 1 0.9802 4.7842 2.3907 34 1 2.9660 4.9727 4.5606 35 1 0.7412 4.4404 5.3804 36 1 0.1474 5.8248 4.4321 37 1 -0.6584 6.8462 6.6717 38 1 -0.0084 5.3917 7.4656 39 1 -2.0507 6.9961 10.0772 40 1 3.1741 4.6738 -0.7581 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567262373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:25 Heat of formation + Delta-G solvation = 23.869802 kcal Electronic energy + Delta-G solvation = -19663.730802 eV Core-core repulsion = 16603.510963 eV Total energy + Delta-G solvation = -3060.219839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.95540 -38.84048 -36.93320 -35.60985 -35.07626 -33.67135 -31.78769 -29.70113 -27.92397 -26.30907 -24.72770 -23.49681 -23.37226 -22.36396 -20.65099 -18.80899 -18.39449 -18.25616 -16.79454 -16.51992 -16.21769 -16.02400 -15.69619 -15.39508 -15.24923 -14.77596 -14.59286 -14.25641 -14.08353 -13.80264 -13.73488 -13.48601 -13.21985 -13.10800 -12.96994 -12.63355 -12.53803 -12.49693 -12.43091 -12.26073 -12.00049 -11.94146 -11.87967 -11.39118 -11.12170 -10.56485 -10.56129 -10.34773 -9.62854 -9.36224 -8.19815 -6.28134 -0.23083 0.44926 0.78467 1.39224 1.42136 1.52798 1.79207 2.08206 2.14676 2.41483 3.05991 3.15507 3.22784 3.36553 3.92269 4.09047 4.19469 4.23983 4.29523 4.32215 4.34252 4.39107 4.60361 4.63608 4.74387 4.79029 4.82331 4.96799 4.98997 5.04939 5.05314 5.10766 5.27832 5.36530 5.46695 5.61310 5.78936 5.97896 6.20641 6.51666 6.82381 6.83249 6.93457 7.40555 8.91479 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.027415 B = 0.002405 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.076792 B =11638.727127 C =12366.366660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C 0.042 3.958 4 N -0.497 5.497 5 C 0.056 3.944 6 C -0.036 4.036 7 C 0.078 3.922 8 N -0.698 5.698 9 C 0.079 3.921 10 C 0.021 3.979 11 H 0.122 0.878 12 C 0.266 3.734 13 N -0.513 5.513 14 C 0.037 3.963 15 C -0.537 4.537 16 H 0.055 0.945 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.950 3.050 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.266 4.266 24 S 0.143 5.857 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.057 0.943 34 H 0.352 0.648 35 H 0.064 0.936 36 H 0.066 0.934 37 H -0.001 1.001 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.909 -16.944 -22.482 29.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 C -0.236 4.236 4 N -0.212 5.212 5 C -0.075 4.075 6 C -0.076 4.076 7 C -0.052 4.052 8 N -0.330 5.330 9 C -0.051 4.051 10 C -0.001 4.001 11 H 0.140 0.860 12 C -0.050 4.050 13 N -0.191 5.191 14 C -0.002 4.002 15 C -0.576 4.576 16 H 0.074 0.926 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.776 3.224 20 H -0.193 1.193 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.405 4.405 24 S 0.398 5.602 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.126 0.874 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.171 0.829 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.018 0.982 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 7.739 -15.252 -23.944 29.425 hybrid contribution -0.010 0.228 2.313 2.324 sum 7.728 -15.024 -21.631 27.447 Atomic orbital electron populations 1.21755 0.93078 1.03567 1.01908 1.20379 0.96997 0.86225 1.05306 1.27594 1.02142 1.02790 0.91103 1.66090 1.15821 1.06447 1.32858 1.20363 1.00905 0.91380 0.94895 1.20090 0.98047 0.97129 0.92338 1.21678 0.97432 0.94163 0.91879 1.60451 1.06757 1.53275 1.12495 1.21838 0.93712 0.97892 0.91664 1.19167 1.02637 0.82958 0.95354 0.86019 1.29256 0.90690 0.94730 0.90316 1.80899 1.11638 1.13658 1.12878 1.19000 0.91864 0.97608 0.91738 1.21588 1.00725 1.31571 1.03672 0.92633 1.25744 0.94985 0.96937 1.01282 1.70042 1.07640 1.45600 1.33190 0.85613 0.78374 0.78635 0.79772 1.19289 1.21151 1.19777 1.27138 1.12213 1.05464 0.95694 1.83752 1.59890 1.04773 1.11787 0.93775 0.92181 0.89506 0.87379 0.88890 0.88940 0.89630 0.94600 0.92441 0.82921 0.91810 0.91544 0.98210 0.94709 0.92716 0.78966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.89 71.98 0.71 -0.88 16 2 C -0.05 -0.56 6.52 29.85 0.19 -0.37 16 3 C 0.04 0.73 6.64 88.52 0.59 1.32 16 4 N -0.50 -11.11 10.34 -179.40 -1.86 -12.97 16 5 C 0.06 1.18 6.08 41.52 0.25 1.43 16 6 C -0.04 -0.71 5.97 29.85 0.18 -0.53 16 7 C 0.08 1.81 5.59 86.30 0.48 2.30 16 8 N -0.70 -17.68 6.20 -513.88 -3.19 -20.87 16 9 C 0.08 2.34 5.05 86.30 0.44 2.77 16 10 C 0.02 0.75 2.35 -12.60 -0.03 0.72 16 11 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 12 C 0.27 11.13 13.66 89.46 1.22 12.35 16 13 N -0.51 -23.47 18.53 19.98 0.37 -23.10 16 14 C 0.04 1.72 4.42 29.85 0.13 1.85 16 15 C -0.54 -28.73 8.60 25.60 0.22 -28.51 16 16 H 0.06 2.94 7.59 -2.91 -0.02 2.91 16 17 C 0.01 0.51 5.46 84.66 0.46 0.98 16 18 N -0.92 -53.67 13.29 21.45 0.28 -53.39 16 19 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 C -0.27 -4.57 11.07 66.78 0.74 -3.84 16 24 S 0.14 2.05 23.18 -56.49 -1.31 0.74 16 25 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.73 8.03 -2.38 -0.02 1.71 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 0.88 8.08 -2.39 -0.02 0.86 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.35 7.69 8.73 -89.70 -0.78 6.91 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 38 H 0.03 1.64 8.14 -2.39 -0.02 1.63 16 39 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.19 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -66.99 360.19 2.17 -64.82 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.25 Total: 9.35 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 5.59 Total: -10.41 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -4.39 Total: -110.32 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -1.31 Total: 0.74 kcal Total: -66.99 2.17 -64.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567262373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.693 kcal (2) G-P(sol) polarization free energy of solvation -66.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds