Wall clock time and date at job start Tue Mar 31 2020 06:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50698 * 109.47305 * 2 1 4 4 N 1.29034 * 124.91324 * 90.00182 * 3 2 1 5 5 C 1.31781 * 117.12218 * 180.02562 * 4 3 2 6 6 C 1.50697 * 122.74926 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47299 * 305.02534 * 6 5 4 8 8 N 1.46901 * 109.47515 * 179.97438 * 7 6 5 9 9 C 1.46895 * 111.00119 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47270 * 179.97438 * 9 8 7 11 11 H 1.09009 * 109.47154 * 54.99975 * 10 9 8 12 12 C 1.47200 * 109.47451 * 295.00037 * 10 9 8 13 13 N 9.38516 * 100.66241 * 54.99624 * 2 1 3 14 14 C 1.52996 * 109.47347 * 174.99819 * 10 9 8 15 15 C 1.50702 * 109.47159 * 185.00014 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.33643 * 114.50310 * 0.23018 * 5 4 3 24 24 S 1.70975 * 124.91911 * 270.00264 * 3 2 1 25 25 H 1.08994 * 109.47286 * 59.99484 * 1 2 3 26 26 H 1.09000 * 109.47283 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47172 * 299.99911 * 1 2 3 28 28 H 1.09006 * 109.47172 * 240.00089 * 2 1 3 29 29 H 1.09003 * 109.47275 * 120.00701 * 2 1 3 30 30 H 1.09004 * 109.47753 * 185.02420 * 6 5 4 31 31 H 1.08996 * 109.47465 * 65.02275 * 6 5 4 32 32 H 1.09002 * 109.47245 * 59.99611 * 7 6 5 33 33 H 1.08996 * 109.47056 * 299.99885 * 7 6 5 34 34 H 1.00905 * 110.99468 * 303.95636 * 8 7 6 35 35 H 1.08998 * 109.47324 * 59.99878 * 9 8 7 36 36 H 1.09002 * 109.47421 * 300.00055 * 9 8 7 37 37 H 1.09004 * 109.47066 * 65.00217 * 14 10 9 38 38 H 1.08994 * 109.47405 * 305.00047 * 14 10 9 39 39 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 40 40 H 1.07993 * 126.03959 * 179.76380 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1170 1.0581 5 6 2.7133 3.3482 0.8795 6 6 3.0392 4.2718 2.0247 7 6 1.8261 4.3845 2.9502 8 7 2.1441 5.2845 4.0670 9 6 0.9995 5.4175 4.9781 10 6 1.3682 6.3595 6.1259 11 1 1.7128 7.3104 5.7191 12 6 2.4400 5.7539 6.9329 13 7 3.2664 5.2907 7.5548 14 6 0.1393 6.5967 7.0058 15 6 0.4683 7.6188 8.0633 16 1 1.4551 8.0558 8.1035 17 6 -0.4925 8.0005 8.9757 18 7 -0.2070 8.8965 9.8951 19 14 -2.1994 7.2451 8.9058 20 1 -2.2359 6.0252 9.7518 21 1 -3.1955 8.2255 9.4077 22 1 -2.5240 6.8841 7.5024 23 6 2.8363 3.7123 -0.4005 24 16 2.3585 2.3435 -1.4019 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 3.2921 5.2581 1.6355 31 1 3.8864 3.8735 2.5830 32 1 1.5732 3.3983 3.3395 33 1 0.9790 4.7829 2.3920 34 1 2.9658 4.9707 4.5614 35 1 0.7402 4.4385 5.3811 36 1 0.1470 5.8237 4.4338 37 1 -0.1520 5.6610 7.4830 38 1 -0.6830 6.9621 6.3907 39 1 -0.8827 9.1647 10.5372 40 1 3.1714 4.6747 -0.7579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567262374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:27 Heat of formation + Delta-G solvation = 47.488815 kcal Electronic energy + Delta-G solvation = -19730.286200 eV Core-core repulsion = 16671.090558 eV Total energy + Delta-G solvation = -3059.195642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.27458 -37.63085 -35.71514 -34.58676 -33.66373 -32.21234 -30.88129 -28.87129 -26.69988 -25.67897 -23.42377 -22.41881 -21.81219 -21.29137 -19.99318 -17.85270 -16.92980 -16.75719 -16.04041 -15.62167 -15.24576 -15.01091 -14.74853 -14.36271 -13.93686 -13.73109 -13.42900 -13.17447 -12.88652 -12.74329 -12.66852 -12.42481 -12.15378 -12.04154 -11.82548 -11.56903 -11.53735 -11.41136 -11.23960 -11.10733 -10.83494 -10.29359 -9.98281 -9.90456 -9.75842 -9.69772 -9.31970 -8.97902 -8.60654 -8.38499 -6.09654 -4.10176 0.41425 1.05919 1.43391 2.49796 3.27828 3.35514 3.35869 3.56009 3.59991 3.68992 4.17415 4.39285 4.50871 4.70279 4.72216 4.78427 4.92895 4.98553 5.01698 5.16818 5.25058 5.34341 5.39470 5.43239 5.47875 5.53707 5.64794 5.74336 5.81764 5.90102 6.01417 6.06629 6.20910 6.37316 6.96742 7.00750 7.14485 7.37786 7.48779 7.64807 8.35365 8.43755 8.93991 9.50219 11.03485 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.002555 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.604682 B =10956.929954 C =11481.274956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C 0.054 3.946 4 N -0.466 5.466 5 C 0.077 3.923 6 C -0.044 4.044 7 C 0.067 3.933 8 N -0.692 5.692 9 C 0.066 3.934 10 C 0.017 3.983 11 H 0.117 0.883 12 C 0.239 3.761 13 N -0.468 5.468 14 C -0.004 4.004 15 C -0.528 4.528 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.262 1.262 23 C -0.257 4.257 24 S 0.105 5.895 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.339 0.661 35 H 0.035 0.965 36 H 0.091 0.909 37 H 0.019 0.981 38 H 0.039 0.961 39 H 0.264 0.736 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 -15.568 -26.709 30.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 C -0.224 4.224 4 N -0.181 5.181 5 C -0.055 4.055 6 C -0.084 4.084 7 C -0.062 4.062 8 N -0.323 5.323 9 C -0.064 4.064 10 C -0.005 4.005 11 H 0.134 0.866 12 C -0.078 4.078 13 N -0.145 5.145 14 C -0.043 4.043 15 C -0.565 4.565 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.535 5.535 19 Si 0.705 3.295 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.187 1.187 23 C -0.396 4.396 24 S 0.360 5.640 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.053 0.947 36 H 0.109 0.891 37 H 0.037 0.963 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.835 -16.018 -26.547 31.134 hybrid contribution -0.972 -0.266 1.069 1.469 sum 1.863 -16.284 -25.478 30.294 Atomic orbital electron populations 1.21770 0.93333 1.02663 1.02816 1.20237 0.96876 0.87523 1.04253 1.27100 1.02674 1.01797 0.90854 1.66084 1.14584 1.05886 1.31516 1.20273 0.99755 0.91142 0.94283 1.20188 0.98783 0.96936 0.92526 1.21806 0.97095 0.95074 0.92267 1.60543 1.06983 1.52434 1.12365 1.22082 0.93697 0.98237 0.92378 1.19075 0.91612 0.98007 0.91846 0.86552 1.29052 0.93249 0.92525 0.93007 1.80933 1.12595 1.10976 1.09974 1.19635 0.91735 0.97779 0.95187 1.21039 1.00291 1.22662 1.12549 0.90768 1.24997 0.98697 0.94556 0.94908 1.69906 1.34662 1.31411 1.17564 0.86812 0.84441 0.79240 0.79021 1.20310 1.21250 1.18679 1.26845 1.12820 1.04283 0.95650 1.83937 1.60975 1.05979 1.13112 0.92377 0.91318 0.91780 0.89702 0.88729 0.89113 0.90217 0.94269 0.90939 0.84289 0.94655 0.89109 0.96279 0.94278 0.92573 0.80461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.15 0.37 -0.49 16 2 C -0.05 -0.31 6.52 -27.89 -0.18 -0.49 16 3 C 0.05 0.49 6.64 -13.45 -0.09 0.40 16 4 N -0.47 -5.29 10.34 -8.06 -0.08 -5.37 16 5 C 0.08 0.81 6.08 -84.23 -0.51 0.30 16 6 C -0.04 -0.44 5.97 -27.88 -0.17 -0.61 16 7 C 0.07 0.77 5.59 -3.82 -0.02 0.75 16 8 N -0.69 -8.99 6.50 -113.78 -0.74 -9.72 16 9 C 0.07 0.95 5.12 -3.83 -0.02 0.93 16 10 C 0.02 0.30 2.42 -93.41 -0.23 0.07 16 11 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 12 C 0.24 4.83 12.97 -20.85 -0.27 4.56 16 13 N -0.47 -10.33 18.52 42.05 0.78 -9.55 16 14 C 0.00 -0.09 3.49 -27.88 -0.10 -0.19 16 15 C -0.53 -14.34 9.15 -34.44 -0.32 -14.65 16 16 H 0.07 2.21 7.84 -52.49 -0.41 1.80 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 19 Si 0.88 20.83 27.47 -169.99 -4.67 16.16 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 23 C -0.26 -2.23 11.07 29.12 0.32 -1.91 16 24 S 0.11 0.80 23.18 -107.50 -2.49 -1.69 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.81 8.03 -51.93 -0.42 0.40 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.34 4.57 7.81 -39.29 -0.31 4.27 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 38 H 0.04 0.80 7.19 -51.93 -0.37 0.43 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -32.06 355.40 -8.52 -40.58 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.14 Total: 0.17 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -1.31 Total: -9.42 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.73 Total: -51.15 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.49 Total: -1.69 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.06 -8.52 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567262374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.069 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds