Wall clock time and date at job start Tue Mar 31 2020 06:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50698 * 109.47305 * 2 1 4 4 N 1.29034 * 124.91324 * 90.00182 * 3 2 1 5 5 C 1.31781 * 117.12218 * 180.02562 * 4 3 2 6 6 C 1.50697 * 122.74926 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47299 * 305.02534 * 6 5 4 8 8 N 1.46901 * 109.47515 * 179.97438 * 7 6 5 9 9 C 1.46895 * 111.00119 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47270 * 179.97438 * 9 8 7 11 11 H 1.09009 * 109.47154 * 54.99975 * 10 9 8 12 12 C 1.47200 * 109.47451 * 295.00037 * 10 9 8 13 13 N 9.38516 * 100.66241 * 54.99624 * 2 1 3 14 14 C 1.52996 * 109.47347 * 174.99819 * 10 9 8 15 15 C 1.50702 * 109.47159 * 185.00014 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.33643 * 114.50310 * 0.23018 * 5 4 3 24 24 S 1.70975 * 124.91911 * 270.00264 * 3 2 1 25 25 H 1.08994 * 109.47286 * 59.99484 * 1 2 3 26 26 H 1.09000 * 109.47283 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47172 * 299.99911 * 1 2 3 28 28 H 1.09006 * 109.47172 * 240.00089 * 2 1 3 29 29 H 1.09003 * 109.47275 * 120.00701 * 2 1 3 30 30 H 1.09004 * 109.47753 * 185.02420 * 6 5 4 31 31 H 1.08996 * 109.47465 * 65.02275 * 6 5 4 32 32 H 1.09002 * 109.47245 * 59.99611 * 7 6 5 33 33 H 1.08996 * 109.47056 * 299.99885 * 7 6 5 34 34 H 1.00905 * 110.99468 * 303.95636 * 8 7 6 35 35 H 1.08998 * 109.47324 * 59.99878 * 9 8 7 36 36 H 1.09002 * 109.47421 * 300.00055 * 9 8 7 37 37 H 1.09004 * 109.47066 * 65.00217 * 14 10 9 38 38 H 1.08994 * 109.47405 * 305.00047 * 14 10 9 39 39 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 40 40 H 1.07993 * 126.03959 * 179.76380 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1170 1.0581 5 6 2.7133 3.3482 0.8795 6 6 3.0392 4.2718 2.0247 7 6 1.8261 4.3845 2.9502 8 7 2.1441 5.2845 4.0670 9 6 0.9995 5.4175 4.9781 10 6 1.3682 6.3595 6.1259 11 1 1.7128 7.3104 5.7191 12 6 2.4400 5.7539 6.9329 13 7 3.2664 5.2907 7.5548 14 6 0.1393 6.5967 7.0058 15 6 0.4683 7.6188 8.0633 16 1 1.4551 8.0558 8.1035 17 6 -0.4925 8.0005 8.9757 18 7 -0.2070 8.8965 9.8951 19 14 -2.1994 7.2451 8.9058 20 1 -2.2359 6.0252 9.7518 21 1 -3.1955 8.2255 9.4077 22 1 -2.5240 6.8841 7.5024 23 6 2.8363 3.7123 -0.4005 24 16 2.3585 2.3435 -1.4019 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 3.2921 5.2581 1.6355 31 1 3.8864 3.8735 2.5830 32 1 1.5732 3.3983 3.3395 33 1 0.9790 4.7829 2.3920 34 1 2.9658 4.9707 4.5614 35 1 0.7402 4.4385 5.3811 36 1 0.1470 5.8237 4.4338 37 1 -0.1520 5.6610 7.4830 38 1 -0.6830 6.9621 6.3907 39 1 -0.8827 9.1647 10.5372 40 1 3.1714 4.6747 -0.7579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567262374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:27 Heat of formation + Delta-G solvation = 26.429641 kcal Electronic energy + Delta-G solvation = -19731.199394 eV Core-core repulsion = 16671.090558 eV Total energy + Delta-G solvation = -3060.108836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.95628 -39.00333 -36.95313 -35.65244 -35.06139 -33.81797 -31.93808 -29.86227 -28.15993 -26.31139 -24.57135 -23.54769 -23.12540 -22.35506 -20.64584 -18.96918 -18.50079 -18.28597 -16.91089 -16.71616 -16.24766 -16.01448 -15.65565 -15.37487 -15.09661 -14.96272 -14.62260 -14.36529 -14.08926 -14.03354 -13.89314 -13.61886 -13.26781 -13.23658 -12.94106 -12.59330 -12.56128 -12.48122 -12.37941 -12.06071 -12.00099 -11.86049 -11.71711 -11.51671 -11.30346 -10.73970 -10.55843 -10.34182 -9.62424 -9.42856 -8.24953 -6.30520 -0.22399 0.45686 0.79174 1.43190 1.43953 1.55367 1.79309 1.93940 1.94887 2.40733 3.04316 3.10850 3.21393 3.22367 3.91733 4.03362 4.16780 4.21748 4.26443 4.32807 4.34010 4.40661 4.57177 4.62597 4.63656 4.76189 4.85766 4.92067 4.97681 5.02520 5.04302 5.09465 5.25022 5.26982 5.35625 5.45107 5.62914 5.98888 6.25688 6.29656 6.73059 6.79569 6.83413 7.33798 8.91986 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.002555 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.604682 B =10956.929954 C =11481.274956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 C 0.040 3.960 4 N -0.501 5.501 5 C 0.055 3.945 6 C -0.038 4.038 7 C 0.075 3.925 8 N -0.691 5.691 9 C 0.076 3.924 10 C 0.024 3.976 11 H 0.122 0.878 12 C 0.249 3.751 13 N -0.505 5.505 14 C -0.003 4.003 15 C -0.531 4.531 16 H 0.029 0.971 17 C 0.002 3.998 18 N -0.954 5.954 19 Si 0.948 3.052 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.223 1.223 23 C -0.260 4.260 24 S 0.146 5.854 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.043 0.957 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.025 0.975 33 H 0.077 0.923 34 H 0.335 0.665 35 H 0.037 0.963 36 H 0.113 0.887 37 H 0.024 0.976 38 H 0.066 0.934 39 H 0.265 0.735 40 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 -16.928 -29.637 34.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 C -0.238 4.238 4 N -0.217 5.217 5 C -0.077 4.077 6 C -0.078 4.078 7 C -0.054 4.054 8 N -0.322 5.322 9 C -0.054 4.054 10 C 0.002 3.998 11 H 0.140 0.860 12 C -0.068 4.068 13 N -0.183 5.183 14 C -0.042 4.042 15 C -0.569 4.569 16 H 0.048 0.952 17 C -0.194 4.194 18 N -0.595 5.595 19 Si 0.771 3.229 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.146 1.146 23 C -0.399 4.399 24 S 0.401 5.599 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.063 0.937 28 H 0.126 0.874 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.096 0.904 34 H 0.152 0.848 35 H 0.055 0.945 36 H 0.131 0.869 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.284 -17.397 -29.517 34.287 hybrid contribution -0.380 0.180 1.931 1.976 sum 0.904 -17.217 -27.587 32.531 Atomic orbital electron populations 1.21746 0.92922 1.03526 1.02008 1.20374 0.97159 0.86369 1.05118 1.27549 1.02303 1.02768 0.91217 1.66089 1.15918 1.06624 1.33020 1.20330 1.01160 0.91281 0.94940 1.20111 0.97774 0.97605 0.92344 1.21749 0.97969 0.93901 0.91777 1.60549 1.06377 1.52937 1.12307 1.21983 0.94658 0.97372 0.91395 1.19115 0.89374 0.99222 0.92077 0.85993 1.29610 0.93111 0.91631 0.92409 1.80931 1.13795 1.12490 1.11065 1.19590 0.93992 0.96114 0.94485 1.21405 0.98349 1.23216 1.13924 0.95226 1.26047 1.03823 0.95095 0.94469 1.70087 1.36416 1.33856 1.19115 0.85699 0.78260 0.77870 0.81097 1.20302 1.21457 1.14568 1.27160 1.11809 1.05502 0.95452 1.83757 1.59811 1.04718 1.11600 0.91943 0.89645 0.93739 0.87426 0.89271 0.87905 0.90997 0.95621 0.90428 0.84761 0.94484 0.86889 0.95778 0.91635 0.92642 0.78511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.89 71.98 0.71 -0.75 16 2 C -0.05 -0.56 6.52 29.84 0.19 -0.36 16 3 C 0.04 0.66 6.64 88.52 0.59 1.25 16 4 N -0.50 -11.00 10.34 -179.40 -1.86 -12.85 16 5 C 0.05 1.08 6.08 41.52 0.25 1.33 16 6 C -0.04 -0.73 5.97 29.85 0.18 -0.55 16 7 C 0.08 1.62 5.59 86.30 0.48 2.10 16 8 N -0.69 -16.73 6.50 -513.90 -3.34 -20.07 16 9 C 0.08 1.98 5.12 86.30 0.44 2.42 16 10 C 0.02 0.82 2.42 -12.60 -0.03 0.79 16 11 H 0.12 4.09 8.14 -2.38 -0.02 4.07 16 12 C 0.25 10.02 12.97 89.47 1.16 11.18 16 13 N -0.51 -22.54 18.52 19.97 0.37 -22.17 16 14 C 0.00 -0.11 3.49 29.85 0.10 -0.01 16 15 C -0.53 -29.01 9.15 25.60 0.23 -28.78 16 16 H 0.03 1.83 7.84 -2.91 -0.02 1.80 16 17 C 0.00 0.13 5.47 84.66 0.46 0.59 16 18 N -0.95 -59.60 13.96 21.45 0.30 -59.31 16 19 Si 0.95 41.95 27.47 68.60 1.88 43.83 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.22 -8.43 6.54 99.48 0.65 -7.78 16 23 C -0.26 -4.00 11.07 66.78 0.74 -3.26 16 24 S 0.15 1.91 23.18 -56.49 -1.31 0.60 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.66 8.03 -2.39 -0.02 1.64 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.03 0.63 8.08 -2.39 -0.02 0.61 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.34 8.70 7.81 -89.69 -0.70 8.00 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.02 0.98 7.57 -2.38 -0.02 0.96 16 38 H 0.07 2.40 7.19 -2.39 -0.02 2.39 16 39 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.20 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -71.09 355.40 1.85 -69.24 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.28 Total: 14.76 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 5.52 Total: -14.04 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -4.53 Total: -114.40 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.88 Total: 43.83 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -1.31 Total: 0.60 kcal Total: -71.09 1.85 -69.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567262374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.670 kcal (2) G-P(sol) polarization free energy of solvation -71.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds