Wall clock time and date at job start Tue Mar 31 2020 06:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31781 * 122.75306 * 2 1 4 4 C 1.29025 * 117.12739 * 180.02562 * 3 2 1 5 5 C 1.50697 * 124.91560 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47299 * 90.00267 * 5 4 3 7 7 N 1.46901 * 109.47515 * 179.97438 * 6 5 4 8 8 C 1.46895 * 111.00119 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.47270 * 179.97438 * 8 7 6 10 10 H 1.09009 * 109.47154 * 54.99975 * 9 8 7 11 11 C 1.47200 * 109.47451 * 295.00037 * 9 8 7 12 12 N 9.14384 * 149.03070 * 21.27008 * 2 1 3 13 13 C 1.52996 * 109.47347 * 174.99819 * 9 8 7 14 14 C 1.50702 * 109.47159 * 185.00014 * 13 9 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 9 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 9 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 S 1.70972 * 110.16678 * 0.23301 * 4 3 2 23 23 C 1.33643 * 122.75037 * 180.02562 * 2 1 3 24 24 C 1.50700 * 126.03503 * 359.96487 * 23 2 1 25 25 H 1.08995 * 109.47214 * 89.96752 * 1 2 3 26 26 H 1.09000 * 109.47145 * 209.96920 * 1 2 3 27 27 H 1.09000 * 109.46917 * 329.96520 * 1 2 3 28 28 H 1.09004 * 109.47753 * 330.00152 * 5 4 3 29 29 H 1.08996 * 109.47465 * 210.00008 * 5 4 3 30 30 H 1.09002 * 109.47245 * 59.99611 * 6 5 4 31 31 H 1.08996 * 109.47056 * 299.99885 * 6 5 4 32 32 H 1.00905 * 110.99468 * 303.95636 * 7 6 5 33 33 H 1.08998 * 109.47324 * 59.99878 * 8 7 6 34 34 H 1.09002 * 109.47421 * 300.00055 * 8 7 6 35 35 H 1.09004 * 109.47066 * 65.00217 * 13 9 8 36 36 H 1.08994 * 109.47405 * 305.00047 * 13 9 8 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.46744 * 90.01190 * 24 23 2 39 39 H 1.09002 * 109.47002 * 210.00561 * 24 23 2 40 40 H 1.08997 * 109.47308 * 330.00409 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9818 -0.0005 5 6 4.4835 2.1270 -0.0012 6 6 4.8157 2.5149 1.4411 7 7 5.7710 3.6308 1.4406 8 6 6.1133 4.0315 2.8117 9 6 7.1084 5.1929 2.7703 10 1 6.6953 6.0041 2.1708 11 6 8.3726 4.7348 2.1714 12 7 9.3473 4.3847 1.7069 13 6 7.3694 5.6919 4.1929 14 6 8.2523 6.9122 4.1431 15 1 8.5929 7.2939 3.1920 16 6 8.6202 7.5451 5.3116 17 7 8.2051 7.0804 6.4698 18 14 9.7082 9.0621 5.2494 19 1 9.0313 10.1250 4.4637 20 1 9.9576 9.5493 6.6299 21 1 11.0013 8.7180 4.6054 22 16 3.9332 -0.6731 -0.0076 23 6 2.2300 -1.1240 -0.0005 24 6 1.6846 -2.5289 -0.0004 25 1 -0.3633 0.0006 -1.0276 26 1 -0.3633 -0.8903 0.5134 27 1 -0.3633 0.8897 0.5144 28 1 4.0432 2.9816 -0.5150 29 1 5.3958 1.8246 -0.5153 30 1 5.2560 1.6604 1.9550 31 1 3.9035 2.8174 1.9553 32 1 6.5996 3.3972 0.9141 33 1 6.5621 3.1875 3.3356 34 1 5.2100 4.3450 3.3349 35 1 7.8640 4.9088 4.7676 36 1 6.4223 5.9479 4.6676 37 1 8.4643 7.5254 7.2919 38 1 1.5528 -2.8675 -1.0281 39 1 2.3831 -3.1897 0.5131 40 1 0.7237 -2.5456 0.5139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568934105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:26 Heat of formation + Delta-G solvation = 42.766584 kcal Electronic energy + Delta-G solvation = -19591.949650 eV Core-core repulsion = 16532.549237 eV Total energy + Delta-G solvation = -3059.400413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.20977 -37.64445 -35.81382 -34.22779 -33.46253 -32.03958 -30.49757 -29.59620 -26.67161 -25.35725 -24.11815 -22.52281 -22.06874 -21.49761 -19.11076 -18.15097 -16.73509 -16.59918 -15.88301 -15.55486 -15.32323 -14.72934 -14.41051 -14.22981 -13.61656 -13.53812 -13.35163 -13.28922 -13.02578 -12.89464 -12.71282 -12.43931 -12.35965 -12.17494 -11.97575 -11.57855 -11.35918 -11.33672 -11.19864 -11.00587 -10.73045 -10.56339 -10.26233 -9.82430 -9.55754 -9.45285 -9.25081 -8.81522 -8.45484 -8.40305 -6.09293 -4.12522 0.43659 1.07979 1.49670 2.52218 3.31752 3.35849 3.39392 3.55184 3.60669 3.72586 4.27217 4.42549 4.57597 4.71147 4.78187 4.82935 4.87759 5.00879 5.03106 5.11135 5.28623 5.29436 5.34031 5.45454 5.48824 5.51624 5.64193 5.69383 5.83789 5.85866 6.03952 6.14252 6.33742 6.53542 7.00760 7.36259 7.43889 7.52668 7.54152 7.85490 8.23058 8.38351 8.91768 9.52838 11.01565 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.033730 B = 0.002332 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.914592 B =12003.260325 C =12342.762610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.061 3.939 3 N -0.465 5.465 4 C 0.061 3.939 5 C -0.044 4.044 6 C 0.067 3.933 7 N -0.690 5.690 8 C 0.068 3.932 9 C 0.006 3.994 10 H 0.112 0.888 11 C 0.241 3.759 12 N -0.476 5.476 13 C 0.032 3.968 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.277 1.277 22 S 0.112 5.888 23 C -0.234 4.234 24 C -0.073 4.073 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.031 0.969 31 H 0.082 0.918 32 H 0.338 0.662 33 H 0.036 0.964 34 H 0.093 0.907 35 H 0.024 0.976 36 H 0.040 0.960 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.907 -18.274 -12.563 27.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 N -0.179 5.179 4 C -0.218 4.218 5 C -0.085 4.085 6 C -0.064 4.064 7 N -0.321 5.321 8 C -0.062 4.062 9 C -0.016 4.016 10 H 0.130 0.870 11 C -0.075 4.075 12 N -0.153 5.153 13 C -0.006 4.006 14 C -0.565 4.565 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.720 3.280 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.203 1.203 22 S 0.368 5.632 23 C -0.355 4.355 24 C -0.132 4.132 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.049 0.951 31 H 0.101 0.899 32 H 0.156 0.844 33 H 0.054 0.946 34 H 0.111 0.889 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.172 -18.298 -13.149 26.618 hybrid contribution 0.065 0.328 0.568 0.659 sum -14.107 -17.970 -12.581 26.081 Atomic orbital electron populations 1.20362 0.87191 1.03344 1.02823 1.20196 0.98172 0.86234 1.02423 1.66140 1.04474 1.31427 1.15896 1.26860 0.94065 0.97837 1.03028 1.20267 0.95387 0.93953 0.98926 1.21880 0.97555 0.92420 0.94526 1.60521 1.17800 1.38368 1.15406 1.22085 0.99123 0.96562 0.88394 1.19338 0.84158 0.96990 1.01067 0.87004 1.29286 0.94708 0.91972 0.91564 1.80994 1.11552 1.10859 1.11942 1.19162 0.98405 0.96451 0.86607 1.21109 1.31023 1.11556 0.92836 0.92529 1.24958 0.96057 0.97535 0.95450 1.69930 1.45135 1.40490 0.97486 0.86643 0.81117 0.83173 0.77079 1.19987 1.21203 1.20280 1.84036 1.06885 1.03411 1.68859 1.25680 0.95127 1.00986 1.13680 1.20228 1.01138 0.89073 1.02773 0.90721 0.90775 0.90492 0.87534 0.89764 0.95067 0.89928 0.84396 0.94582 0.88881 0.95752 0.94161 0.92735 0.90664 0.91187 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.06 36.00 0.36 -0.21 16 2 C 0.06 0.63 6.74 -84.23 -0.57 0.07 16 3 N -0.47 -5.68 10.53 -8.06 -0.08 -5.76 16 4 C 0.06 0.67 6.64 -13.46 -0.09 0.58 16 5 C -0.04 -0.45 6.06 -27.88 -0.17 -0.62 16 6 C 0.07 0.76 5.67 -3.82 -0.02 0.73 16 7 N -0.69 -8.91 6.50 -113.78 -0.74 -9.65 16 8 C 0.07 1.00 5.12 -3.83 -0.02 0.98 16 9 C 0.01 0.12 2.42 -93.41 -0.23 -0.11 16 10 H 0.11 1.96 8.14 -51.92 -0.42 1.54 16 11 C 0.24 4.82 12.97 -20.79 -0.27 4.55 16 12 N -0.48 -10.26 18.53 42.12 0.78 -9.48 16 13 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 14 C -0.53 -14.04 8.60 -34.44 -0.30 -14.34 16 15 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.59 13.29 55.43 0.74 -24.86 16 18 Si 0.89 21.37 29.54 -169.99 -5.02 16.34 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 S 0.11 1.06 23.18 -107.50 -2.49 -1.43 16 23 C -0.23 -2.12 6.59 -35.92 -0.24 -2.36 16 24 C -0.07 -0.42 10.10 36.01 0.36 -0.06 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.39 6.72 -51.93 -0.35 0.04 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.34 4.38 7.81 -39.29 -0.31 4.08 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.36 6.76 -51.93 -0.35 0.01 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -30.91 356.76 -8.87 -39.78 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -6.04 Total: -1.79 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -1.39 Total: -8.52 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.69 Total: -49.75 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.49 Total: -1.43 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.91 -8.87 -39.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568934105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.542 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds