Wall clock time and date at job start Tue Mar 31 2020 06:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31781 * 122.75306 * 2 1 4 4 C 1.29025 * 117.12739 * 180.02562 * 3 2 1 5 5 C 1.50697 * 124.91560 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47299 * 90.00267 * 5 4 3 7 7 N 1.46901 * 109.47515 * 179.97438 * 6 5 4 8 8 C 1.46895 * 111.00119 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.47270 * 179.97438 * 8 7 6 10 10 H 1.09009 * 109.47154 * 54.99975 * 9 8 7 11 11 C 1.47200 * 109.47451 * 295.00037 * 9 8 7 12 12 N 9.14384 * 149.03070 * 21.27008 * 2 1 3 13 13 C 1.52996 * 109.47347 * 174.99819 * 9 8 7 14 14 C 1.50702 * 109.47159 * 185.00014 * 13 9 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 9 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 9 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 S 1.70972 * 110.16678 * 0.23301 * 4 3 2 23 23 C 1.33643 * 122.75037 * 180.02562 * 2 1 3 24 24 C 1.50700 * 126.03503 * 359.96487 * 23 2 1 25 25 H 1.08995 * 109.47214 * 89.96752 * 1 2 3 26 26 H 1.09000 * 109.47145 * 209.96920 * 1 2 3 27 27 H 1.09000 * 109.46917 * 329.96520 * 1 2 3 28 28 H 1.09004 * 109.47753 * 330.00152 * 5 4 3 29 29 H 1.08996 * 109.47465 * 210.00008 * 5 4 3 30 30 H 1.09002 * 109.47245 * 59.99611 * 6 5 4 31 31 H 1.08996 * 109.47056 * 299.99885 * 6 5 4 32 32 H 1.00905 * 110.99468 * 303.95636 * 7 6 5 33 33 H 1.08998 * 109.47324 * 59.99878 * 8 7 6 34 34 H 1.09002 * 109.47421 * 300.00055 * 8 7 6 35 35 H 1.09004 * 109.47066 * 65.00217 * 13 9 8 36 36 H 1.08994 * 109.47405 * 305.00047 * 13 9 8 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.46744 * 90.01190 * 24 23 2 39 39 H 1.09002 * 109.47002 * 210.00561 * 24 23 2 40 40 H 1.08997 * 109.47308 * 330.00409 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9818 -0.0005 5 6 4.4835 2.1270 -0.0012 6 6 4.8157 2.5149 1.4411 7 7 5.7710 3.6308 1.4406 8 6 6.1133 4.0315 2.8117 9 6 7.1084 5.1929 2.7703 10 1 6.6953 6.0041 2.1708 11 6 8.3726 4.7348 2.1714 12 7 9.3473 4.3847 1.7069 13 6 7.3694 5.6919 4.1929 14 6 8.2523 6.9122 4.1431 15 1 8.5929 7.2939 3.1920 16 6 8.6202 7.5451 5.3116 17 7 8.2051 7.0804 6.4698 18 14 9.7082 9.0621 5.2494 19 1 9.0313 10.1250 4.4637 20 1 9.9576 9.5493 6.6299 21 1 11.0013 8.7180 4.6054 22 16 3.9332 -0.6731 -0.0076 23 6 2.2300 -1.1240 -0.0005 24 6 1.6846 -2.5289 -0.0004 25 1 -0.3633 0.0006 -1.0276 26 1 -0.3633 -0.8903 0.5134 27 1 -0.3633 0.8897 0.5144 28 1 4.0432 2.9816 -0.5150 29 1 5.3958 1.8246 -0.5153 30 1 5.2560 1.6604 1.9550 31 1 3.9035 2.8174 1.9553 32 1 6.5996 3.3972 0.9141 33 1 6.5621 3.1875 3.3356 34 1 5.2100 4.3450 3.3349 35 1 7.8640 4.9088 4.7676 36 1 6.4223 5.9479 4.6676 37 1 8.4643 7.5254 7.2919 38 1 1.5528 -2.8675 -1.0281 39 1 2.3831 -3.1897 0.5131 40 1 0.7237 -2.5456 0.5139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568934105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:26 Heat of formation + Delta-G solvation = 23.929921 kcal Electronic energy + Delta-G solvation = -19592.766469 eV Core-core repulsion = 16532.549237 eV Total energy + Delta-G solvation = -3060.217232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.94727 -39.00551 -37.08010 -35.66099 -34.78973 -33.47983 -31.50999 -30.33075 -28.26215 -26.12153 -25.21926 -23.77747 -23.60120 -22.54499 -19.83280 -18.88857 -18.51306 -18.24558 -17.01191 -16.71246 -16.32105 -16.05202 -15.43050 -15.32394 -14.80495 -14.46839 -14.42461 -14.15380 -14.08139 -13.87010 -13.77113 -13.72278 -13.44150 -13.36657 -13.08953 -12.89411 -12.79687 -12.56654 -12.45388 -12.34059 -12.18538 -11.99305 -11.91008 -11.40592 -11.17064 -10.59175 -10.54670 -10.18517 -9.52048 -9.46685 -8.19228 -6.27528 -0.29705 0.37154 0.76532 1.41813 1.42873 1.50228 1.76897 1.94470 1.96877 2.41752 2.88663 3.15747 3.24772 3.37565 3.95243 3.99724 4.07283 4.16516 4.16741 4.22591 4.41527 4.52813 4.59523 4.67615 4.69059 4.79987 4.88590 4.90798 4.96450 4.98653 5.03598 5.06500 5.07777 5.43714 5.47466 5.62181 5.79331 5.91358 6.20517 6.30418 6.75035 6.80142 6.87392 7.40927 8.91528 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.033730 B = 0.002332 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.914592 B =12003.260325 C =12342.762610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.035 3.965 3 N -0.492 5.492 4 C 0.041 3.959 5 C -0.037 4.037 6 C 0.073 3.927 7 N -0.688 5.688 8 C 0.078 3.922 9 C 0.019 3.981 10 H 0.125 0.875 11 C 0.251 3.749 12 N -0.502 5.502 13 C 0.038 3.962 14 C -0.540 4.540 15 H 0.055 0.945 16 C 0.010 3.990 17 N -0.924 5.924 18 Si 0.949 3.051 19 H -0.263 1.263 20 H -0.282 1.282 21 H -0.280 1.280 22 S 0.122 5.878 23 C -0.230 4.230 24 C -0.075 4.075 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.340 0.660 33 H 0.035 0.965 34 H 0.103 0.897 35 H 0.001 0.999 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.677 -19.098 -13.426 28.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 N -0.207 5.207 4 C -0.237 4.237 5 C -0.078 4.078 6 C -0.057 4.057 7 N -0.319 5.319 8 C -0.052 4.052 9 C -0.002 4.002 10 H 0.142 0.858 11 C -0.065 4.065 12 N -0.180 5.180 13 C -0.001 4.001 14 C -0.578 4.578 15 H 0.073 0.927 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.775 3.225 19 H -0.188 1.188 20 H -0.208 1.208 21 H -0.206 1.206 22 S 0.378 5.622 23 C -0.350 4.350 24 C -0.134 4.134 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.157 0.843 33 H 0.054 0.946 34 H 0.121 0.879 35 H 0.019 0.981 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.953 -19.122 -14.029 28.036 hybrid contribution 0.276 0.512 0.819 1.005 sum -14.677 -18.610 -13.209 27.134 Atomic orbital electron populations 1.20439 0.85472 1.03990 1.03570 1.20662 0.99499 0.86186 1.03284 1.66152 1.05197 1.32888 1.16508 1.26923 0.94036 0.98768 1.03995 1.20181 0.95819 0.93787 0.98049 1.21825 0.96683 0.91807 0.95432 1.60469 1.17996 1.39365 1.14099 1.21919 0.98435 0.95183 0.89630 1.19211 0.84270 0.98727 0.98038 0.85783 1.29574 0.94668 0.91216 0.91004 1.80997 1.12209 1.11954 1.12800 1.18988 0.97201 0.94701 0.89231 1.21538 1.31078 1.12513 0.92670 0.92678 1.25734 0.97476 1.00334 0.95350 1.70029 1.46504 1.41845 0.97997 0.85735 0.79222 0.80287 0.77252 1.18769 1.20771 1.20609 1.83932 1.07503 1.02273 1.68461 1.26149 0.94663 1.02268 1.11959 1.20392 1.01926 0.87076 1.03959 0.89876 0.88602 0.91367 0.88106 0.88485 0.94707 0.90569 0.84264 0.94627 0.87858 0.98073 0.94616 0.92711 0.89324 0.90460 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.06 71.24 0.72 -0.28 16 2 C 0.03 0.68 6.74 41.52 0.28 0.96 16 3 N -0.49 -11.83 10.53 -179.41 -1.89 -13.72 16 4 C 0.04 0.88 6.64 88.52 0.59 1.47 16 5 C -0.04 -0.73 6.06 29.85 0.18 -0.55 16 6 C 0.07 1.58 5.67 86.30 0.49 2.06 16 7 N -0.69 -16.88 6.50 -513.90 -3.34 -20.22 16 8 C 0.08 2.22 5.12 86.30 0.44 2.66 16 9 C 0.02 0.69 2.42 -12.60 -0.03 0.66 16 10 H 0.12 4.16 8.14 -2.38 -0.02 4.14 16 11 C 0.25 9.87 12.97 89.45 1.16 11.03 16 12 N -0.50 -21.30 18.53 19.99 0.37 -20.93 16 13 C 0.04 1.74 4.42 29.85 0.13 1.87 16 14 C -0.54 -28.65 8.60 25.60 0.22 -28.43 16 15 H 0.05 2.88 7.59 -2.91 -0.02 2.86 16 16 C 0.01 0.55 5.46 84.66 0.46 1.01 16 17 N -0.92 -53.31 13.29 21.45 0.28 -53.03 16 18 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 S 0.12 2.17 23.18 -56.49 -1.31 0.86 16 23 C -0.23 -3.79 6.59 24.64 0.16 -3.63 16 24 C -0.07 -0.67 10.10 71.24 0.72 0.05 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.10 0.79 6.72 -2.39 -0.02 0.77 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.34 8.33 7.81 -89.69 -0.70 7.63 16 33 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 2.74 8.14 -2.39 -0.02 2.73 16 35 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 38 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.10 0.57 6.76 -2.39 -0.02 0.55 16 Total: -1.00 -65.33 356.76 2.01 -63.32 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.34 Total: 9.25 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 5.52 Total: -11.13 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -4.57 Total: -107.90 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.31 Total: 0.86 kcal Total: -65.33 2.01 -63.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568934105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.247 kcal (2) G-P(sol) polarization free energy of solvation -65.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds