Wall clock time and date at job start Tue Mar 31 2020 06:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86810 * 119.99759 * 2 1 4 4 H 1.48500 * 109.47179 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46883 * 300.00264 * 3 2 1 6 6 H 1.48497 * 109.46934 * 59.99970 * 3 2 1 7 7 C 1.37878 * 120.00836 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00507 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99439 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47187 * 180.02562 * 9 7 2 11 11 C 1.53099 * 109.52781 * 294.67655 * 10 9 7 12 12 C 1.53034 * 109.29509 * 182.43453 * 11 10 9 13 13 N 1.46847 * 109.51345 * 59.18740 * 12 11 10 14 14 C 1.46898 * 110.99897 * 174.16738 * 13 12 11 15 15 C 1.50704 * 109.46918 * 189.99613 * 14 13 12 16 16 C 1.34846 * 119.48230 * 89.72945 * 15 14 13 17 17 C 1.41729 * 119.01606 * 179.80375 * 16 15 14 18 18 O 1.22164 * 120.92220 * 180.21604 * 17 16 15 19 19 C 1.42227 * 118.15011 * 0.45924 * 17 16 15 20 20 O 1.36088 * 120.55889 * 179.73768 * 19 17 16 21 21 C 1.35112 * 118.88258 * 359.76227 * 19 17 16 22 22 O 1.33778 * 119.48578 * 269.99921 * 15 14 13 23 23 C 1.46854 * 111.19790 * 298.26320 * 13 12 11 24 24 C 1.53039 * 109.52227 * 61.74204 * 23 13 12 25 25 H 0.97004 * 120.00513 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47202 * 60.00010 * 9 7 2 27 27 H 1.09001 * 109.47488 * 300.00154 * 9 7 2 28 28 H 1.09002 * 109.52267 * 54.87253 * 10 9 7 29 29 H 1.09007 * 109.48839 * 62.49095 * 11 10 9 30 30 H 1.09009 * 109.50682 * 302.38881 * 11 10 9 31 31 H 1.09002 * 109.46271 * 299.17460 * 12 11 10 32 32 H 1.08994 * 109.46242 * 179.19760 * 12 11 10 33 33 H 1.08994 * 109.47159 * 309.99836 * 14 13 12 34 34 H 1.09006 * 109.47282 * 69.99962 * 14 13 12 35 35 H 1.08001 * 120.49039 * 0.02562 * 16 15 14 36 36 H 0.96697 * 113.99929 * 270.01642 * 20 19 17 37 37 H 1.08000 * 119.57382 * 180.02562 * 21 19 17 38 38 H 1.08993 * 109.46229 * 181.76227 * 23 13 12 39 39 H 1.09008 * 109.45803 * 301.73838 * 23 13 12 40 40 H 1.08994 * 109.50227 * 60.75933 * 24 23 13 41 41 H 1.08998 * 109.50241 * 180.83988 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6619 -0.0015 11 6 3.0369 -3.6588 -1.3120 12 6 3.9864 -4.8588 -1.3322 13 7 3.2109 -6.1000 -1.2110 14 6 4.0751 -7.2778 -1.3653 15 6 3.2223 -8.5148 -1.4812 16 6 2.8115 -8.9262 -2.6979 17 6 2.0133 -10.0932 -2.7959 18 8 1.6254 -10.4992 -3.8808 19 6 1.6722 -10.7755 -1.5954 20 8 0.9037 -11.8980 -1.6321 21 6 2.1235 -10.2901 -0.4181 22 8 2.8800 -9.1846 -0.3749 23 6 2.4795 -6.1470 0.0615 24 6 1.4851 -4.9853 0.1231 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5563 -0.8920 27 1 0.6241 -2.5575 0.8880 28 1 2.9308 -3.5550 0.8394 29 1 3.6138 -2.7369 -1.3862 30 1 2.3475 -3.7260 -2.1537 31 1 4.6843 -4.7837 -0.4983 32 1 4.5411 -4.8673 -2.2704 33 1 4.6810 -7.1685 -2.2647 34 1 4.7274 -7.3662 -0.4964 35 1 3.0898 -8.3765 -3.5850 36 1 -0.0459 -11.7268 -1.5680 37 1 1.8715 -10.7995 0.5003 38 1 1.9400 -7.0911 0.1356 39 1 3.1845 -6.0657 0.8889 40 1 0.7715 -5.0733 -0.6959 41 1 0.9530 -5.0118 1.0740 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581941655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:44 Heat of formation + Delta-G solvation = -81.842577 kcal Electronic energy + Delta-G solvation = -23331.515316 eV Core-core repulsion = 19791.665822 eV Total energy + Delta-G solvation = -3539.849494 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.34475 -39.25768 -38.80057 -37.38180 -35.15577 -33.12255 -32.19776 -31.36547 -30.51650 -28.44410 -26.16283 -24.79887 -23.92356 -22.72605 -22.34172 -20.76289 -19.42398 -19.07998 -18.76062 -17.24040 -17.03358 -16.29787 -16.27336 -15.48778 -15.13631 -14.90229 -14.78682 -14.51342 -14.14559 -13.85813 -13.69634 -13.35920 -13.31564 -12.85164 -12.62411 -12.29896 -12.06438 -11.66494 -11.51654 -11.19655 -10.90851 -10.76069 -10.70517 -10.37162 -10.04168 -9.98497 -9.70574 -9.62335 -9.14188 -8.94100 -8.86671 -8.42049 -8.35490 -6.00869 -4.02711 0.56281 0.71641 1.89974 3.08048 3.29003 3.37050 3.39761 3.56322 3.85314 4.09232 4.14850 4.44231 4.55172 4.72717 5.03010 5.11274 5.13512 5.21380 5.30360 5.34845 5.44833 5.47507 5.56933 5.73094 5.81453 5.82640 5.99917 6.10580 6.30195 6.42917 6.54480 6.74987 6.85788 6.93252 7.07928 7.08347 7.11300 7.16020 7.57434 7.66421 7.81923 7.99315 8.41841 9.04111 9.61180 11.10426 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032015 B = 0.002909 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.377171 B = 9623.916615 C = 9791.076868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.101 4.101 12 C 0.057 3.943 13 N -0.532 5.532 14 C 0.099 3.901 15 C 0.144 3.856 16 C -0.281 4.281 17 C 0.382 3.618 18 O -0.483 6.483 19 C -0.080 4.080 20 O -0.468 6.468 21 C 0.080 3.920 22 O -0.204 6.204 23 C 0.055 3.945 24 C -0.112 4.112 25 H 0.259 0.741 26 H 0.017 0.983 27 H 0.014 0.986 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.061 0.939 35 H 0.162 0.838 36 H 0.389 0.611 37 H 0.204 0.796 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.066 0.934 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.039 -19.218 0.911 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.101 4.101 11 C -0.138 4.138 12 C -0.069 4.069 13 N -0.257 5.257 14 C -0.028 4.028 15 C 0.096 3.904 16 C -0.302 4.302 17 C 0.271 3.729 18 O -0.368 6.368 19 C -0.127 4.127 20 O -0.277 6.277 21 C 0.014 3.986 22 O -0.106 6.106 23 C -0.072 4.072 24 C -0.150 4.150 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.133 0.867 34 H 0.079 0.921 35 H 0.180 0.820 36 H 0.244 0.756 37 H 0.220 0.780 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.983 -19.497 0.164 20.711 hybrid contribution 0.333 1.032 0.647 1.262 sum 7.316 -18.465 0.811 19.878 Atomic orbital electron populations 1.69966 1.06043 1.26412 1.51049 1.25021 0.94793 0.99174 0.95499 0.86601 0.80107 0.84110 0.77561 1.19791 1.21064 1.21123 1.21273 0.92928 0.90986 1.50155 0.92638 1.19117 0.93609 0.91029 0.97179 1.21246 0.97962 0.94723 0.96131 1.21569 0.97889 0.95311 0.99049 1.22257 0.95414 0.88981 1.00290 1.62063 1.27288 1.00804 1.35564 1.21190 0.92360 0.85239 1.04038 1.22513 0.92682 0.91348 0.83846 1.22801 1.06610 1.02159 0.98597 1.18007 0.80773 0.84780 0.89357 1.90817 1.49816 1.66417 1.29758 1.20223 1.04806 0.93938 0.93767 1.84936 1.21428 1.25852 1.95499 1.24363 0.89946 0.84288 1.00016 1.82983 1.58071 1.34190 1.35309 1.22237 0.96622 0.99702 0.88667 1.21702 0.97483 0.94086 1.01716 0.93105 0.96476 0.96762 0.92890 0.90466 0.91615 0.94778 0.91025 0.86739 0.92069 0.82047 0.75560 0.77961 0.91664 0.94669 0.91543 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -13.90 8.45 -34.44 -0.29 -14.19 16 8 H 0.06 1.45 7.08 -52.49 -0.37 1.08 16 9 C 0.03 0.68 4.45 -27.89 -0.12 0.56 16 10 C -0.08 -1.55 2.20 -90.51 -0.20 -1.75 16 11 C -0.10 -1.71 5.15 -26.66 -0.14 -1.85 16 12 C 0.06 0.74 5.46 -3.84 -0.02 0.72 16 13 N -0.53 -6.46 4.65 -236.11 -1.10 -7.56 16 14 C 0.10 0.89 5.27 -4.98 -0.03 0.87 16 15 C 0.14 1.39 5.64 -35.51 -0.20 1.19 16 16 C -0.28 -3.15 9.62 -39.45 -0.38 -3.52 16 17 C 0.38 5.11 6.81 -36.72 -0.25 4.86 16 18 O -0.48 -8.31 17.74 -10.25 -0.18 -8.50 16 19 C -0.08 -0.83 6.73 -39.16 -0.26 -1.09 16 20 O -0.47 -4.58 13.37 -35.04 -0.47 -5.05 16 21 C 0.08 0.59 11.30 29.62 0.33 0.93 16 22 O -0.20 -1.76 8.66 7.86 0.07 -1.69 16 23 C 0.06 0.71 5.29 -3.83 -0.02 0.69 16 24 C -0.11 -1.80 5.38 -26.65 -0.14 -1.94 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.41 7.05 -51.93 -0.37 1.04 16 30 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 31 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.79 8.02 -51.93 -0.42 0.37 16 33 H 0.11 0.82 7.91 -51.93 -0.41 0.41 16 34 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 35 H 0.16 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.39 2.08 9.07 45.56 0.41 2.49 16 37 H 0.20 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.06 0.77 6.31 -51.93 -0.33 0.44 16 39 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -34.06 338.89 -7.94 -42.00 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -5.26 Total: -1.65 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -1.82 Total: -13.08 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: -0.36 Total: -33.29 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.58 Total: -15.24 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.06 -7.94 -42.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581941655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.844 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds