Wall clock time and date at job start Tue Mar 31 2020 06:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86810 * 119.99759 * 2 1 4 4 H 1.48500 * 109.47179 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46883 * 300.00264 * 3 2 1 6 6 H 1.48497 * 109.46934 * 59.99970 * 3 2 1 7 7 C 1.37878 * 120.00836 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00507 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99439 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47187 * 180.02562 * 9 7 2 11 11 C 1.53099 * 109.52781 * 294.67655 * 10 9 7 12 12 C 1.53034 * 109.29509 * 182.43453 * 11 10 9 13 13 N 1.46847 * 109.51345 * 59.18740 * 12 11 10 14 14 C 1.46898 * 110.99897 * 174.16738 * 13 12 11 15 15 C 1.50704 * 109.46918 * 189.99613 * 14 13 12 16 16 C 1.34846 * 119.48230 * 89.72945 * 15 14 13 17 17 C 1.41729 * 119.01606 * 179.80375 * 16 15 14 18 18 O 1.22164 * 120.92220 * 180.21604 * 17 16 15 19 19 C 1.42227 * 118.15011 * 0.45924 * 17 16 15 20 20 O 1.36088 * 120.55889 * 179.73768 * 19 17 16 21 21 C 1.35112 * 118.88258 * 359.76227 * 19 17 16 22 22 O 1.33778 * 119.48578 * 269.99921 * 15 14 13 23 23 C 1.46854 * 111.19790 * 298.26320 * 13 12 11 24 24 C 1.53039 * 109.52227 * 61.74204 * 23 13 12 25 25 H 0.97004 * 120.00513 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47202 * 60.00010 * 9 7 2 27 27 H 1.09001 * 109.47488 * 300.00154 * 9 7 2 28 28 H 1.09002 * 109.52267 * 54.87253 * 10 9 7 29 29 H 1.09007 * 109.48839 * 62.49095 * 11 10 9 30 30 H 1.09009 * 109.50682 * 302.38881 * 11 10 9 31 31 H 1.09002 * 109.46271 * 299.17460 * 12 11 10 32 32 H 1.08994 * 109.46242 * 179.19760 * 12 11 10 33 33 H 1.08994 * 109.47159 * 309.99836 * 14 13 12 34 34 H 1.09006 * 109.47282 * 69.99962 * 14 13 12 35 35 H 1.08001 * 120.49039 * 0.02562 * 16 15 14 36 36 H 0.96697 * 113.99929 * 270.01642 * 20 19 17 37 37 H 1.08000 * 119.57382 * 180.02562 * 21 19 17 38 38 H 1.08993 * 109.46229 * 181.76227 * 23 13 12 39 39 H 1.09008 * 109.45803 * 301.73838 * 23 13 12 40 40 H 1.08994 * 109.50227 * 60.75933 * 24 23 13 41 41 H 1.08998 * 109.50241 * 180.83988 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6619 -0.0015 11 6 3.0369 -3.6588 -1.3120 12 6 3.9864 -4.8588 -1.3322 13 7 3.2109 -6.1000 -1.2110 14 6 4.0751 -7.2778 -1.3653 15 6 3.2223 -8.5148 -1.4812 16 6 2.8115 -8.9262 -2.6979 17 6 2.0133 -10.0932 -2.7959 18 8 1.6254 -10.4992 -3.8808 19 6 1.6722 -10.7755 -1.5954 20 8 0.9037 -11.8980 -1.6321 21 6 2.1235 -10.2901 -0.4181 22 8 2.8800 -9.1846 -0.3749 23 6 2.4795 -6.1470 0.0615 24 6 1.4851 -4.9853 0.1231 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5563 -0.8920 27 1 0.6241 -2.5575 0.8880 28 1 2.9308 -3.5550 0.8394 29 1 3.6138 -2.7369 -1.3862 30 1 2.3475 -3.7260 -2.1537 31 1 4.6843 -4.7837 -0.4983 32 1 4.5411 -4.8673 -2.2704 33 1 4.6810 -7.1685 -2.2647 34 1 4.7274 -7.3662 -0.4964 35 1 3.0898 -8.3765 -3.5850 36 1 -0.0459 -11.7268 -1.5680 37 1 1.8715 -10.7995 0.5003 38 1 1.9400 -7.0911 0.1356 39 1 3.1845 -6.0657 0.8889 40 1 0.7715 -5.0733 -0.6959 41 1 0.9530 -5.0118 1.0740 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581941655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:43 Heat of formation + Delta-G solvation = -106.419835 kcal Electronic energy + Delta-G solvation = -23332.581066 eV Core-core repulsion = 19791.665822 eV Total energy + Delta-G solvation = -3540.915244 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.12242 -40.22551 -39.82942 -38.19144 -36.49641 -34.67667 -33.50734 -32.30660 -31.69732 -29.90627 -27.45395 -25.62745 -25.37482 -23.96211 -23.38451 -22.14035 -20.44393 -20.14121 -19.56828 -18.42316 -17.99688 -17.84817 -17.11775 -16.58993 -16.33238 -16.07202 -15.73831 -15.60752 -15.17170 -15.07338 -14.81472 -14.72603 -14.30522 -14.04646 -13.91995 -13.70375 -13.27952 -13.03962 -12.83222 -12.60835 -12.46586 -12.34445 -12.14779 -12.00834 -11.62881 -11.24210 -10.90348 -10.76965 -10.68099 -10.57569 -10.51203 -9.72904 -9.32235 -8.15990 -6.25424 -0.22862 -0.04555 1.19056 1.40662 1.41464 1.53729 2.22697 2.42876 2.83720 2.95686 3.17768 3.30136 3.51929 3.86381 3.97491 4.03694 4.11182 4.15164 4.35205 4.43470 4.48827 4.56091 4.63106 4.67131 4.74040 4.80577 4.84572 4.96380 5.04086 5.08913 5.17330 5.39614 5.44377 5.50856 5.60128 5.82668 5.90569 5.97578 6.06437 6.09472 6.31405 6.44363 6.77746 6.92021 7.43374 8.96140 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032015 B = 0.002909 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.377171 B = 9623.916615 C = 9791.076868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.960 3.040 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.064 0.936 9 C 0.032 3.968 10 C -0.075 4.075 11 C -0.098 4.098 12 C 0.069 3.931 13 N -0.547 5.547 14 C 0.101 3.899 15 C 0.163 3.837 16 C -0.298 4.298 17 C 0.365 3.635 18 O -0.548 6.548 19 C -0.110 4.110 20 O -0.480 6.480 21 C 0.118 3.882 22 O -0.195 6.195 23 C 0.064 3.936 24 C -0.108 4.108 25 H 0.261 0.739 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.137 0.863 34 H 0.087 0.913 35 H 0.160 0.840 36 H 0.404 0.596 37 H 0.253 0.747 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.635 -19.938 2.573 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.201 4.201 3 Si 0.785 3.215 4 H -0.182 1.182 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.563 4.563 8 H 0.082 0.918 9 C -0.005 4.005 10 C -0.094 4.094 11 C -0.136 4.136 12 C -0.058 4.058 13 N -0.273 5.273 14 C -0.026 4.026 15 C 0.114 3.886 16 C -0.319 4.319 17 C 0.259 3.741 18 O -0.439 6.439 19 C -0.157 4.157 20 O -0.292 6.292 21 C 0.052 3.948 22 O -0.095 6.095 23 C -0.063 4.063 24 C -0.146 4.146 25 H 0.069 0.931 26 H 0.002 0.998 27 H 0.002 0.998 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.155 0.845 34 H 0.105 0.895 35 H 0.178 0.822 36 H 0.262 0.738 37 H 0.268 0.732 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.601 -20.220 1.856 22.460 hybrid contribution -0.521 1.271 0.223 1.391 sum 9.080 -18.949 2.078 21.115 Atomic orbital electron populations 1.70112 1.07880 1.27419 1.52436 1.25970 0.95654 1.03291 0.95230 0.85477 0.79374 0.79206 0.77474 1.18166 1.20840 1.20767 1.21701 0.93511 0.91975 1.49157 0.91767 1.19026 0.94116 0.93323 0.94068 1.21091 0.96925 0.93904 0.97439 1.21447 0.97985 0.97212 0.96909 1.22084 0.94224 0.87229 1.02250 1.61924 1.28426 1.01700 1.35276 1.21340 0.91849 0.83054 1.06348 1.22604 0.91437 0.91211 0.83341 1.22761 1.07473 1.02070 0.99575 1.18648 0.80326 0.85352 0.89787 1.90781 1.52961 1.68353 1.31777 1.20107 1.06907 0.95011 0.93687 1.84902 1.22801 1.25959 1.95490 1.25056 0.86632 0.82553 1.00519 1.83048 1.57441 1.34290 1.34747 1.22109 0.96195 0.98379 0.89636 1.21599 0.97895 0.94146 1.00997 0.93057 0.99767 0.99776 0.92708 0.92079 0.93610 0.93344 0.88600 0.84531 0.89516 0.82216 0.73833 0.73164 0.90127 0.93224 0.93342 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.07 13.29 21.45 0.28 -56.79 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.53 -28.83 8.45 25.60 0.22 -28.61 16 8 H 0.06 3.34 7.08 -2.91 -0.02 3.31 16 9 C 0.03 1.63 4.45 29.85 0.13 1.76 16 10 C -0.07 -2.84 2.20 -10.72 -0.02 -2.86 16 11 C -0.10 -3.26 5.15 30.64 0.16 -3.10 16 12 C 0.07 1.54 5.46 86.32 0.47 2.01 16 13 N -0.55 -11.44 4.65 -900.91 -4.19 -15.62 16 14 C 0.10 1.35 5.27 85.56 0.45 1.80 16 15 C 0.16 2.59 5.64 24.91 0.14 2.73 16 16 C -0.30 -6.35 9.62 22.35 0.21 -6.13 16 17 C 0.36 9.83 6.81 24.12 0.16 10.00 16 18 O -0.55 -20.00 17.74 8.51 0.15 -19.85 16 19 C -0.11 -2.12 6.73 22.54 0.15 -1.97 16 20 O -0.48 -8.95 13.37 -80.19 -1.07 -10.03 16 21 C 0.12 1.28 11.30 67.10 0.76 2.04 16 22 O -0.20 -2.48 8.66 5.20 0.05 -2.43 16 23 C 0.06 1.44 5.29 86.32 0.46 1.89 16 24 C -0.11 -3.40 5.38 30.65 0.16 -3.24 16 25 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 26 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 27 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.06 2.20 7.05 -2.38 -0.02 2.18 16 30 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 32 H 0.10 1.74 8.02 -2.39 -0.02 1.72 16 33 H 0.14 1.31 7.91 -2.39 -0.02 1.29 16 34 H 0.09 0.84 8.12 -2.38 -0.02 0.82 16 35 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.40 4.04 9.07 -74.06 -0.67 3.37 16 37 H 0.25 0.25 8.06 -2.91 -0.02 0.23 16 38 H 0.08 1.57 6.31 -2.39 -0.02 1.55 16 39 H 0.05 1.00 8.14 -2.38 -0.02 0.99 16 40 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 41 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -78.90 338.89 1.53 -77.37 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 0.37 Total: 5.19 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 3.92 Total: -23.48 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -3.90 Total: -72.41 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.88 Total: -32.31 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -78.90 1.53 -77.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581941655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.050 kcal (2) G-P(sol) polarization free energy of solvation -78.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds