Wall clock time and date at job start Tue Mar 31 2020 06:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33640 * 126.03543 * 2 1 4 4 N 1.31786 * 114.50317 * 179.97438 * 3 2 1 5 5 C 1.29034 * 117.11912 * 0.02562 * 4 3 2 6 6 C 1.50697 * 124.91194 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46613 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.47239 * 300.02112 * 6 5 4 9 9 C 1.52997 * 109.47466 * 60.02400 * 6 5 4 10 10 N 1.46898 * 109.47386 * 175.00095 * 9 6 5 11 11 C 1.46901 * 111.00283 * 179.97438 * 10 9 6 12 12 C 1.52995 * 109.47024 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47446 * 304.99973 * 12 11 10 14 14 C 1.47201 * 109.46886 * 65.00427 * 12 11 10 15 15 N 8.75154 * 145.62490 * 354.27245 * 3 1 2 16 16 C 1.53004 * 109.46830 * 184.99754 * 12 11 10 17 17 C 1.50700 * 109.46941 * 175.00362 * 16 12 11 18 18 H 1.08004 * 120.00461 * 0.02562 * 17 16 12 19 19 C 1.37877 * 119.99922 * 180.02562 * 17 16 12 20 20 N 1.31511 * 120.00362 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99849 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46963 * 90.00269 * 21 19 17 23 23 H 1.48501 * 109.46724 * 209.99863 * 21 19 17 24 24 H 1.48498 * 109.47239 * 329.99599 * 21 19 17 25 25 S 1.70971 * 110.16924 * 0.22756 * 5 4 3 26 26 H 1.09005 * 109.47167 * 90.02622 * 1 2 3 27 27 H 1.08997 * 109.46985 * 210.02506 * 1 2 3 28 28 H 1.08996 * 109.47668 * 330.02838 * 1 2 3 29 29 H 1.08006 * 122.75205 * 0.02562 * 3 2 1 30 30 H 1.09001 * 109.47002 * 60.00070 * 8 6 5 31 31 H 1.08993 * 109.46955 * 180.02562 * 8 6 5 32 32 H 1.09000 * 109.47050 * 300.00336 * 8 6 5 33 33 H 1.09002 * 109.47196 * 294.99972 * 9 6 5 34 34 H 1.09004 * 109.46881 * 54.99487 * 9 6 5 35 35 H 1.00907 * 111.00007 * 303.95590 * 10 9 6 36 36 H 1.08993 * 109.46846 * 299.99851 * 11 10 9 37 37 H 1.09002 * 109.46761 * 59.99969 * 11 10 9 38 38 H 1.08995 * 109.47396 * 295.00586 * 16 12 11 39 39 H 1.08999 * 109.46774 * 55.00383 * 16 12 11 40 40 H 0.96994 * 120.00627 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8172 0.0005 5 6 3.9311 -0.4257 0.0005 6 6 5.3532 -0.9244 0.0005 7 1 5.3559 -2.0144 0.0000 8 6 6.0734 -0.4120 -1.2485 9 6 6.0730 -0.4131 1.2500 10 7 7.4202 -0.9955 1.3118 11 6 8.1429 -0.5254 2.5012 12 6 9.5382 -1.1524 2.5311 13 1 9.4502 -2.2375 2.4766 14 6 10.3197 -0.6652 1.3828 15 7 10.9230 -0.2875 0.4931 16 6 10.2447 -0.7626 3.8310 17 6 11.5683 -1.4779 3.9173 18 1 11.8752 -2.1436 3.1241 19 6 12.3877 -1.2825 5.0089 20 7 12.0144 -0.4716 5.9745 21 14 14.0281 -2.1697 5.1161 22 1 15.0837 -1.3360 4.4872 23 1 14.3695 -2.4083 6.5416 24 1 13.9350 -3.4701 4.4051 25 16 2.5437 -1.4247 -0.0067 26 1 -0.3634 -0.0005 -1.0277 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3634 0.8902 0.5134 29 1 1.9024 2.0876 0.0004 30 1 6.0706 0.6780 -1.2480 31 1 7.1018 -0.7731 -1.2487 32 1 5.5606 -0.7763 -2.1387 33 1 6.1485 0.6734 1.2069 34 1 5.5106 -0.7033 2.1375 35 1 7.3799 -2.0034 1.2876 36 1 8.2328 0.5602 2.4663 37 1 7.5951 -0.8161 3.3976 38 1 10.4121 0.3143 3.8448 39 1 9.6232 -1.0446 4.6809 40 1 12.5909 -0.3338 6.7423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583290658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:16 Heat of formation + Delta-G solvation = 44.674948 kcal Electronic energy + Delta-G solvation = -19901.866626 eV Core-core repulsion = 16842.548966 eV Total energy + Delta-G solvation = -3059.317660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.06992 -37.64908 -36.05865 -34.18963 -33.27076 -32.24247 -30.91680 -27.22511 -27.04732 -25.27960 -24.38398 -22.59100 -21.93605 -21.56982 -18.87207 -18.38789 -17.01398 -16.41590 -15.75113 -15.29662 -15.02289 -14.80570 -14.60511 -14.43785 -13.77669 -13.59470 -13.35954 -13.31251 -13.04718 -12.62881 -12.45660 -12.20867 -12.02008 -11.88779 -11.59226 -11.50844 -11.38893 -11.10869 -11.07504 -10.99930 -10.67814 -10.52072 -10.22062 -9.77366 -9.53290 -9.48172 -9.22751 -8.98613 -8.45619 -8.31764 -6.09030 -4.12215 0.44020 1.05251 1.47760 2.60176 3.30417 3.36997 3.40021 3.73733 3.82847 3.85064 4.28513 4.43035 4.57084 4.73418 4.79584 4.81378 4.91617 5.03123 5.06963 5.25420 5.29107 5.36800 5.50397 5.51679 5.61818 5.75733 5.79450 5.84329 5.95150 6.03409 6.05631 6.33315 6.39935 6.50075 7.04940 7.42578 7.46988 7.53320 7.54340 7.86219 8.23655 8.60916 8.92673 9.53250 11.01878 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.033648 B = 0.002489 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.939141 B =11245.027316 C =11583.152188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.232 4.232 3 C 0.035 3.965 4 N -0.466 5.466 5 C 0.062 3.938 6 C -0.011 4.011 7 H 0.088 0.912 8 C -0.130 4.130 9 C 0.075 3.925 10 N -0.690 5.690 11 C 0.068 3.932 12 C 0.011 3.989 13 H 0.099 0.901 14 C 0.254 3.746 15 N -0.479 5.479 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 S 0.110 5.890 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.173 0.827 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.031 0.969 35 H 0.340 0.660 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.026 0.974 39 H 0.037 0.963 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.840 -2.072 -10.178 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.353 4.353 3 C -0.115 4.115 4 N -0.179 5.179 5 C -0.217 4.217 6 C -0.033 4.033 7 H 0.106 0.894 8 C -0.189 4.189 9 C -0.056 4.056 10 N -0.322 5.322 11 C -0.062 4.062 12 C -0.011 4.011 13 H 0.117 0.883 14 C -0.062 4.062 15 N -0.156 5.156 16 C -0.008 4.008 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.530 5.530 21 Si 0.719 3.281 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.197 1.197 25 S 0.366 5.634 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.190 0.810 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.158 0.842 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.363 -1.628 -11.769 26.211 hybrid contribution -0.118 -0.164 1.266 1.282 sum -23.481 -1.792 -10.503 25.786 Atomic orbital electron populations 1.20211 0.86861 1.03393 1.02844 1.25966 1.01575 0.95117 1.12593 1.21733 0.86981 1.00034 1.02796 1.66207 1.17438 1.18653 1.15557 1.27069 1.00522 0.91240 1.02826 1.19861 0.85421 0.99802 0.98243 0.89407 1.21694 1.00906 1.02120 0.94138 1.21876 0.88432 1.01018 0.94290 1.60474 1.15973 1.13242 1.42467 1.22061 0.92746 1.00960 0.90441 1.19206 0.90727 1.00294 0.90907 0.88285 1.28993 0.92106 0.92397 0.92746 1.81126 1.11190 1.10185 1.13089 1.19171 0.95214 0.97915 0.88456 1.21145 1.02848 1.27110 1.05300 0.92474 1.24960 0.98228 0.95190 0.95643 1.69934 1.37509 1.36341 1.09262 0.86590 0.84109 0.80183 0.77178 1.20636 1.21129 1.19748 1.84003 0.99033 1.11672 1.68689 0.90654 0.91152 0.90238 0.80979 0.91802 0.90093 0.93465 0.89798 0.95113 0.84211 0.90375 0.93215 0.95537 0.94458 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.42 36.00 0.38 -0.01 16 2 C -0.23 -1.93 6.60 -35.92 -0.24 -2.17 16 3 C 0.04 0.34 11.25 -19.18 -0.22 0.13 16 4 N -0.47 -5.52 10.53 -11.86 -0.12 -5.65 16 5 C 0.06 0.66 5.91 -13.46 -0.08 0.58 16 6 C -0.01 -0.11 2.96 -91.77 -0.27 -0.38 16 7 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 8 C -0.13 -1.42 9.06 37.16 0.34 -1.08 16 9 C 0.07 0.85 5.05 -3.83 -0.02 0.83 16 10 N -0.69 -8.60 5.66 -113.78 -0.64 -9.24 16 11 C 0.07 0.99 5.05 -3.83 -0.02 0.97 16 12 C 0.01 0.19 2.35 -93.41 -0.22 -0.03 16 13 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 14 C 0.25 5.28 13.68 -20.65 -0.28 4.99 16 15 N -0.48 -10.86 18.56 42.29 0.78 -10.08 16 16 C 0.03 0.72 4.42 -27.88 -0.12 0.59 16 17 C -0.53 -13.97 8.60 -34.44 -0.30 -14.26 16 18 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 21 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 S 0.11 0.96 23.17 -107.50 -2.49 -1.53 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.17 1.29 8.06 -52.48 -0.42 0.86 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.34 3.66 8.73 -39.29 -0.34 3.31 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 359.13 15.07 5.41 5.41 Total: -1.00 -31.23 359.13 -8.69 -39.93 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -6.20 Total: -2.07 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -1.15 Total: -8.22 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.75 Total: -49.82 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.49 Total: -1.53 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.23 -8.69 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583290658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.601 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds