Wall clock time and date at job start Tue Mar 31 2020 06:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33640 * 126.03543 * 2 1 4 4 N 1.31786 * 114.50317 * 179.97438 * 3 2 1 5 5 C 1.29034 * 117.11912 * 0.02562 * 4 3 2 6 6 C 1.50697 * 124.91194 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46613 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.47239 * 300.02112 * 6 5 4 9 9 C 1.52997 * 109.47466 * 60.02400 * 6 5 4 10 10 N 1.46898 * 109.47386 * 175.00095 * 9 6 5 11 11 C 1.46901 * 111.00283 * 179.97438 * 10 9 6 12 12 C 1.52995 * 109.47024 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47446 * 304.99973 * 12 11 10 14 14 C 1.47201 * 109.46886 * 65.00427 * 12 11 10 15 15 N 8.75154 * 145.62490 * 354.27245 * 3 1 2 16 16 C 1.53004 * 109.46830 * 184.99754 * 12 11 10 17 17 C 1.50700 * 109.46941 * 175.00362 * 16 12 11 18 18 H 1.08004 * 120.00461 * 0.02562 * 17 16 12 19 19 C 1.37877 * 119.99922 * 180.02562 * 17 16 12 20 20 N 1.31511 * 120.00362 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99849 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46963 * 90.00269 * 21 19 17 23 23 H 1.48501 * 109.46724 * 209.99863 * 21 19 17 24 24 H 1.48498 * 109.47239 * 329.99599 * 21 19 17 25 25 S 1.70971 * 110.16924 * 0.22756 * 5 4 3 26 26 H 1.09005 * 109.47167 * 90.02622 * 1 2 3 27 27 H 1.08997 * 109.46985 * 210.02506 * 1 2 3 28 28 H 1.08996 * 109.47668 * 330.02838 * 1 2 3 29 29 H 1.08006 * 122.75205 * 0.02562 * 3 2 1 30 30 H 1.09001 * 109.47002 * 60.00070 * 8 6 5 31 31 H 1.08993 * 109.46955 * 180.02562 * 8 6 5 32 32 H 1.09000 * 109.47050 * 300.00336 * 8 6 5 33 33 H 1.09002 * 109.47196 * 294.99972 * 9 6 5 34 34 H 1.09004 * 109.46881 * 54.99487 * 9 6 5 35 35 H 1.00907 * 111.00007 * 303.95590 * 10 9 6 36 36 H 1.08993 * 109.46846 * 299.99851 * 11 10 9 37 37 H 1.09002 * 109.46761 * 59.99969 * 11 10 9 38 38 H 1.08995 * 109.47396 * 295.00586 * 16 12 11 39 39 H 1.08999 * 109.46774 * 55.00383 * 16 12 11 40 40 H 0.96994 * 120.00627 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8172 0.0005 5 6 3.9311 -0.4257 0.0005 6 6 5.3532 -0.9244 0.0005 7 1 5.3559 -2.0144 0.0000 8 6 6.0734 -0.4120 -1.2485 9 6 6.0730 -0.4131 1.2500 10 7 7.4202 -0.9955 1.3118 11 6 8.1429 -0.5254 2.5012 12 6 9.5382 -1.1524 2.5311 13 1 9.4502 -2.2375 2.4766 14 6 10.3197 -0.6652 1.3828 15 7 10.9230 -0.2875 0.4931 16 6 10.2447 -0.7626 3.8310 17 6 11.5683 -1.4779 3.9173 18 1 11.8752 -2.1436 3.1241 19 6 12.3877 -1.2825 5.0089 20 7 12.0144 -0.4716 5.9745 21 14 14.0281 -2.1697 5.1161 22 1 15.0837 -1.3360 4.4872 23 1 14.3695 -2.4083 6.5416 24 1 13.9350 -3.4701 4.4051 25 16 2.5437 -1.4247 -0.0067 26 1 -0.3634 -0.0005 -1.0277 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3634 0.8902 0.5134 29 1 1.9024 2.0876 0.0004 30 1 6.0706 0.6780 -1.2480 31 1 7.1018 -0.7731 -1.2487 32 1 5.5606 -0.7763 -2.1387 33 1 6.1485 0.6734 1.2069 34 1 5.5106 -0.7033 2.1375 35 1 7.3799 -2.0034 1.2876 36 1 8.2328 0.5602 2.4663 37 1 7.5951 -0.8161 3.3976 38 1 10.4121 0.3143 3.8448 39 1 9.6232 -1.0446 4.6809 40 1 12.5909 -0.3338 6.7423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583290658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:15 Heat of formation + Delta-G solvation = 25.714448 kcal Electronic energy + Delta-G solvation = -19902.688815 eV Core-core repulsion = 16842.548966 eV Total energy + Delta-G solvation = -3060.139849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.80092 -38.90472 -37.34436 -35.67897 -34.82377 -33.26394 -32.21510 -28.63547 -27.90770 -26.38286 -25.28658 -23.93173 -23.46737 -22.55393 -19.64587 -19.11201 -18.54167 -18.30544 -16.69795 -16.50621 -16.21903 -15.94558 -15.59513 -15.45409 -14.98730 -14.78255 -14.35674 -14.09161 -14.01491 -13.80069 -13.69476 -13.52700 -13.31181 -13.25193 -13.03858 -12.92180 -12.55772 -12.47070 -12.39629 -12.12530 -12.07582 -11.92490 -11.85246 -11.37843 -11.12641 -10.54901 -10.48999 -10.16080 -9.67295 -9.33011 -8.18439 -6.26626 -0.25531 0.38642 0.78170 1.40918 1.43307 1.52287 1.87432 2.08793 2.15222 2.42430 3.01593 3.17119 3.33981 3.42639 3.89781 4.00640 4.08546 4.14584 4.25121 4.29572 4.40521 4.49902 4.72447 4.72906 4.79062 4.82415 4.87889 4.90933 4.98189 5.02734 5.07349 5.17605 5.27251 5.45371 5.48524 5.63524 5.80440 5.96961 6.21980 6.55994 6.83086 6.85217 6.96542 7.41981 8.92550 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.033648 B = 0.002489 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.939141 B =11245.027316 C =11583.152188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.224 4.224 3 C 0.010 3.990 4 N -0.495 5.495 5 C 0.038 3.962 6 C -0.006 4.006 7 H 0.109 0.891 8 C -0.123 4.123 9 C 0.083 3.917 10 N -0.694 5.694 11 C 0.080 3.920 12 C 0.023 3.977 13 H 0.125 0.875 14 C 0.265 3.735 15 N -0.515 5.515 16 C 0.036 3.964 17 C -0.537 4.537 18 H 0.056 0.944 19 C 0.009 3.991 20 N -0.925 5.925 21 Si 0.949 3.051 22 H -0.285 1.285 23 H -0.279 1.279 24 H -0.262 1.262 25 S 0.138 5.862 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.187 0.813 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.038 0.962 35 H 0.354 0.646 36 H 0.064 0.936 37 H 0.068 0.932 38 H -0.002 1.002 39 H 0.036 0.964 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.499 -3.683 -10.502 28.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.345 4.345 3 C -0.140 4.140 4 N -0.209 5.209 5 C -0.240 4.240 6 C -0.028 4.028 7 H 0.127 0.873 8 C -0.182 4.182 9 C -0.048 4.048 10 N -0.326 5.326 11 C -0.050 4.050 12 C 0.001 3.999 13 H 0.143 0.857 14 C -0.051 4.051 15 N -0.193 5.193 16 C -0.002 4.002 17 C -0.575 4.575 18 H 0.075 0.925 19 C -0.190 4.190 20 N -0.565 5.565 21 Si 0.774 3.226 22 H -0.211 1.211 23 H -0.204 1.204 24 H -0.186 1.186 25 S 0.394 5.606 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.204 0.796 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.173 0.827 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.016 0.984 39 H 0.054 0.946 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.030 -3.257 -12.105 27.993 hybrid contribution 0.307 0.355 1.346 1.425 sum -24.723 -2.902 -10.759 27.119 Atomic orbital electron populations 1.20365 0.84569 1.04527 1.03962 1.26424 1.03076 0.94552 1.10436 1.22021 0.86629 1.01267 1.04054 1.66195 1.18842 1.19699 1.16154 1.27058 1.01246 0.91559 1.04093 1.19807 0.85267 1.00851 0.96874 0.87325 1.21594 1.00582 1.00766 0.95234 1.21753 0.87881 0.99732 0.95419 1.60356 1.16632 1.14334 1.41295 1.21835 0.91110 0.99932 0.92153 1.19168 0.91558 1.01882 0.87315 0.85739 1.29512 0.91451 0.91447 0.92710 1.81127 1.12278 1.11458 1.14413 1.18999 0.94512 0.95741 0.90992 1.21571 1.04209 1.26836 1.04893 0.92545 1.25738 1.01509 0.96065 0.95654 1.70032 1.38792 1.37784 1.09886 0.85688 0.80077 0.79363 0.77425 1.21150 1.20450 1.18632 1.83834 0.97853 1.11059 1.67902 0.89404 0.90217 0.88896 0.79638 0.93788 0.91060 0.92514 0.91911 0.94349 0.82650 0.91708 0.91441 0.98367 0.94588 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.42 71.24 0.74 0.16 16 2 C -0.22 -3.32 6.60 24.64 0.16 -3.15 16 3 C 0.01 0.19 11.25 83.66 0.94 1.13 16 4 N -0.49 -11.56 10.53 -191.44 -2.02 -13.57 16 5 C 0.04 0.78 5.91 88.52 0.52 1.30 16 6 C -0.01 -0.11 2.96 -11.54 -0.03 -0.14 16 7 H 0.11 1.61 8.12 -2.39 -0.02 1.59 16 8 C -0.12 -2.64 9.06 71.98 0.65 -1.99 16 9 C 0.08 1.81 5.05 86.30 0.44 2.25 16 10 N -0.69 -16.26 5.66 -513.90 -2.91 -19.17 16 11 C 0.08 2.23 5.05 86.30 0.44 2.67 16 12 C 0.02 0.79 2.35 -12.60 -0.03 0.76 16 13 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 14 C 0.26 10.86 13.68 89.40 1.22 12.08 16 15 N -0.52 -23.33 18.56 20.05 0.37 -22.96 16 16 C 0.04 1.67 4.42 29.85 0.13 1.80 16 17 C -0.54 -28.31 8.60 25.60 0.22 -28.09 16 18 H 0.06 2.93 7.59 -2.91 -0.02 2.90 16 19 C 0.01 0.50 5.46 84.66 0.46 0.96 16 20 N -0.92 -53.39 13.29 21.45 0.28 -53.11 16 21 Si 0.95 43.45 29.54 68.60 2.03 45.47 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 25 S 0.14 2.14 23.17 -56.49 -1.31 0.83 16 26 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.19 2.63 8.06 -2.91 -0.02 2.61 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.65 7.75 -2.39 -0.02 1.63 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.35 6.72 8.73 -89.69 -0.78 5.94 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -67.03 359.13 2.57 -64.46 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 0.25 Total: 8.31 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 5.87 Total: -10.26 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -4.26 Total: -108.81 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.31 Total: 0.83 kcal Total: -67.03 2.57 -64.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583290658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.171 kcal (2) G-P(sol) polarization free energy of solvation -67.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds