Wall clock time and date at job start Tue Mar 31 2020 06:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50703 * 124.90978 * 179.74811 * 5 4 3 7 7 H 1.09001 * 109.46651 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46983 * 59.96344 * 6 5 4 9 9 C 1.52998 * 109.47605 * 299.96091 * 6 5 4 10 10 N 1.46898 * 109.47352 * 184.99933 * 9 6 5 11 11 C 1.46898 * 111.00221 * 180.02562 * 10 9 6 12 12 C 1.52992 * 109.46984 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.47758 * 304.99633 * 12 11 10 14 14 C 1.47195 * 109.47569 * 65.00180 * 12 11 10 15 15 N 9.11485 * 149.08535 * 217.40019 * 2 1 3 16 16 C 1.53011 * 109.47174 * 185.00110 * 12 11 10 17 17 C 1.50694 * 109.47260 * 174.99924 * 16 12 11 18 18 H 1.08001 * 120.00344 * 359.97438 * 17 16 12 19 19 C 1.37876 * 119.99779 * 180.02562 * 17 16 12 20 20 N 1.31514 * 120.00139 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00038 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47193 * 90.00426 * 21 19 17 23 23 H 1.48504 * 109.47199 * 209.99888 * 21 19 17 24 24 H 1.48498 * 109.47045 * 330.00077 * 21 19 17 25 25 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 26 26 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 29 29 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47213 * 299.99602 * 8 6 5 31 31 H 1.09004 * 109.46919 * 59.99781 * 8 6 5 32 32 H 1.08996 * 109.47327 * 179.97438 * 8 6 5 33 33 H 1.08999 * 109.46900 * 305.00516 * 9 6 5 34 34 H 1.09002 * 109.46931 * 65.00164 * 9 6 5 35 35 H 1.00897 * 110.99899 * 303.95661 * 10 9 6 36 36 H 1.09000 * 109.47071 * 300.00067 * 11 10 9 37 37 H 1.09001 * 109.47217 * 59.99971 * 11 10 9 38 38 H 1.08998 * 109.46701 * 294.99941 * 16 12 11 39 39 H 1.08998 * 109.46666 * 54.99178 * 16 12 11 40 40 H 0.97000 * 120.00426 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9246 -0.0043 7 1 5.3559 -2.0145 -0.0098 8 6 6.0727 -0.4189 1.2478 9 6 6.0737 -0.4067 -1.2507 10 7 7.4209 -0.9888 -1.3149 11 6 8.1442 -0.5125 -2.5015 12 6 9.5394 -1.1394 -2.5340 13 1 10.0547 -0.9280 -1.5970 14 6 9.4190 -2.5958 -2.7100 15 7 9.3270 -3.7201 -2.8443 16 6 10.3368 -0.5491 -3.6988 17 6 11.7488 -1.0737 -3.6579 18 1 12.0479 -1.7592 -2.8788 19 6 12.6593 -0.6777 -4.6146 20 7 13.8916 -1.1359 -4.5792 21 14 12.1423 0.5086 -5.9617 22 1 12.3829 1.9033 -5.5123 23 1 12.9349 0.2403 -7.1886 24 1 10.6982 0.3252 -6.2554 25 16 2.5436 -1.4248 -0.0077 26 1 -0.3633 -0.0055 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5091 29 1 1.9025 2.0874 -0.0004 30 1 6.0700 0.6711 1.2531 31 1 5.5595 -0.7879 2.1358 32 1 7.1012 -0.7799 1.2466 33 1 5.5117 -0.6921 -2.1400 34 1 6.1492 0.6796 -1.2017 35 1 7.9401 -0.7925 -0.4724 36 1 7.5968 -0.7983 -3.3997 37 1 8.2340 0.5731 -2.4608 38 1 9.8697 -0.8359 -4.6410 39 1 10.3503 0.5377 -3.6160 40 1 14.5322 -0.8571 -5.2520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583290661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:20 Heat of formation + Delta-G solvation = 49.455274 kcal Electronic energy + Delta-G solvation = -19946.060831 eV Core-core repulsion = 16886.950461 eV Total energy + Delta-G solvation = -3059.110370 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.11348 -37.79708 -36.19890 -34.26852 -33.25335 -32.27683 -31.12354 -27.47725 -27.33588 -25.51315 -24.41681 -22.66645 -21.79659 -21.31405 -18.89266 -18.41610 -17.18467 -16.84976 -15.86099 -15.43902 -15.18056 -14.87861 -14.35307 -14.26582 -13.96255 -13.57946 -13.41324 -13.31124 -13.10922 -12.95200 -12.80121 -12.43147 -12.13865 -11.97974 -11.84061 -11.52442 -11.41718 -11.27361 -11.22391 -11.09664 -10.75030 -10.40396 -9.96356 -9.84001 -9.71518 -9.50328 -9.32144 -9.02475 -8.61401 -8.40348 -6.10178 -4.10804 0.40967 1.03205 1.46564 2.55774 3.26348 3.35411 3.36514 3.69853 3.78792 3.81239 4.21694 4.38841 4.55002 4.71201 4.75661 4.76456 4.80384 4.87363 5.04889 5.23638 5.24694 5.34239 5.36693 5.47885 5.51367 5.60294 5.67303 5.70830 5.83290 5.89331 5.91652 6.09993 6.22295 6.30086 6.92668 6.96730 7.13227 7.39363 7.48709 7.64242 8.41023 8.55787 8.93504 9.49701 11.02890 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.028631 B = 0.002650 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.728298 B =10563.781173 C =10915.900088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.232 4.232 3 C 0.034 3.966 4 N -0.468 5.468 5 C 0.060 3.940 6 C -0.013 4.013 7 H 0.099 0.901 8 C -0.141 4.141 9 C 0.075 3.925 10 N -0.693 5.693 11 C 0.065 3.935 12 C 0.020 3.980 13 H 0.105 0.895 14 C 0.252 3.748 15 N -0.471 5.471 16 C -0.005 4.005 17 C -0.528 4.528 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.877 3.123 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.264 1.264 25 S 0.119 5.881 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.173 0.827 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.343 0.657 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.025 0.975 39 H 0.033 0.967 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.449 5.744 11.546 29.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.353 4.353 3 C -0.117 4.117 4 N -0.181 5.181 5 C -0.218 4.218 6 C -0.036 4.036 7 H 0.117 0.883 8 C -0.200 4.200 9 C -0.056 4.056 10 N -0.325 5.325 11 C -0.065 4.065 12 C -0.002 4.002 13 H 0.123 0.877 14 C -0.065 4.065 15 N -0.147 5.147 16 C -0.044 4.044 17 C -0.565 4.565 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.535 5.535 21 Si 0.704 3.296 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.188 1.188 25 S 0.375 5.625 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.190 0.810 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.163 0.837 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.051 0.949 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -26.384 2.790 10.946 28.700 hybrid contribution -0.185 2.849 -0.488 2.896 sum -26.568 5.638 10.458 29.104 Atomic orbital electron populations 1.20216 0.86861 1.03408 1.02859 1.25994 1.01634 0.95254 1.12440 1.21709 0.86996 1.00006 1.02989 1.66211 1.17499 1.18654 1.15715 1.27010 1.00596 0.91248 1.02984 1.19879 0.85587 1.00911 0.97201 0.88318 1.21822 1.00462 1.02143 0.95609 1.21840 0.90098 0.97252 0.96451 1.60508 1.03154 1.62726 1.06116 1.22087 0.93306 0.97607 0.93537 1.18949 0.95293 0.82441 1.03536 0.87730 1.28697 0.91201 0.94649 0.91941 1.81000 1.10514 1.13190 1.10034 1.19639 0.95975 0.96448 0.92371 1.21027 0.92762 1.28796 1.13953 0.90753 1.24995 0.94745 0.95959 0.97457 1.69904 1.03844 1.44275 1.35480 0.86818 0.79273 0.81587 0.81888 1.20063 1.21322 1.18843 1.84100 0.98788 1.11365 1.68280 0.90625 0.91127 0.90256 0.81016 0.91568 0.92495 0.90934 0.91009 0.93757 0.83746 0.90452 0.93103 0.95637 0.94925 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.42 36.01 0.38 0.00 16 2 C -0.23 -1.89 6.60 -35.92 -0.24 -2.13 16 3 C 0.03 0.31 11.25 -19.18 -0.22 0.10 16 4 N -0.47 -5.21 10.53 -11.86 -0.12 -5.33 16 5 C 0.06 0.62 5.91 -13.45 -0.08 0.54 16 6 C -0.01 -0.13 3.03 -91.77 -0.28 -0.41 16 7 H 0.10 0.96 8.12 -51.93 -0.42 0.53 16 8 C -0.14 -1.24 8.94 37.16 0.33 -0.91 16 9 C 0.07 0.81 5.12 -3.83 -0.02 0.79 16 10 N -0.69 -8.38 6.20 -113.79 -0.71 -9.08 16 11 C 0.06 0.88 5.05 -3.83 -0.02 0.86 16 12 C 0.02 0.34 2.35 -93.41 -0.22 0.12 16 13 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 14 C 0.25 5.18 13.67 -20.76 -0.28 4.90 16 15 N -0.47 -10.67 18.54 42.16 0.78 -9.88 16 16 C -0.01 -0.11 3.49 -27.88 -0.10 -0.21 16 17 C -0.53 -14.19 9.15 -34.44 -0.32 -14.50 16 18 H 0.07 2.19 7.84 -52.49 -0.41 1.78 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 21 Si 0.88 20.70 27.47 -169.99 -4.67 16.03 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 25 S 0.12 1.05 23.17 -107.50 -2.49 -1.44 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.58 6.68 -51.93 -0.35 0.24 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.34 3.68 6.98 -39.29 -0.27 3.41 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.56 7.20 -51.93 -0.37 0.18 16 39 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 353.23 15.07 5.32 5.32 Total: -1.00 -32.38 353.23 -8.31 -40.69 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -6.04 Total: -1.02 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -1.16 Total: -8.95 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.72 Total: -50.62 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.49 Total: -1.44 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.38 -8.31 -40.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583290661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.142 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds