Wall clock time and date at job start Tue Mar 31 2020 06:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50703 * 124.90978 * 179.74811 * 5 4 3 7 7 H 1.09001 * 109.46651 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46983 * 59.96344 * 6 5 4 9 9 C 1.52998 * 109.47605 * 299.96091 * 6 5 4 10 10 N 1.46898 * 109.47352 * 184.99933 * 9 6 5 11 11 C 1.46898 * 111.00221 * 180.02562 * 10 9 6 12 12 C 1.52992 * 109.46984 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.47758 * 304.99633 * 12 11 10 14 14 C 1.47195 * 109.47569 * 65.00180 * 12 11 10 15 15 N 9.11485 * 149.08535 * 217.40019 * 2 1 3 16 16 C 1.53011 * 109.47174 * 185.00110 * 12 11 10 17 17 C 1.50694 * 109.47260 * 174.99924 * 16 12 11 18 18 H 1.08001 * 120.00344 * 359.97438 * 17 16 12 19 19 C 1.37876 * 119.99779 * 180.02562 * 17 16 12 20 20 N 1.31514 * 120.00139 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00038 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47193 * 90.00426 * 21 19 17 23 23 H 1.48504 * 109.47199 * 209.99888 * 21 19 17 24 24 H 1.48498 * 109.47045 * 330.00077 * 21 19 17 25 25 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 26 26 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 29 29 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47213 * 299.99602 * 8 6 5 31 31 H 1.09004 * 109.46919 * 59.99781 * 8 6 5 32 32 H 1.08996 * 109.47327 * 179.97438 * 8 6 5 33 33 H 1.08999 * 109.46900 * 305.00516 * 9 6 5 34 34 H 1.09002 * 109.46931 * 65.00164 * 9 6 5 35 35 H 1.00897 * 110.99899 * 303.95661 * 10 9 6 36 36 H 1.09000 * 109.47071 * 300.00067 * 11 10 9 37 37 H 1.09001 * 109.47217 * 59.99971 * 11 10 9 38 38 H 1.08998 * 109.46701 * 294.99941 * 16 12 11 39 39 H 1.08998 * 109.46666 * 54.99178 * 16 12 11 40 40 H 0.97000 * 120.00426 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9246 -0.0043 7 1 5.3559 -2.0145 -0.0098 8 6 6.0727 -0.4189 1.2478 9 6 6.0737 -0.4067 -1.2507 10 7 7.4209 -0.9888 -1.3149 11 6 8.1442 -0.5125 -2.5015 12 6 9.5394 -1.1394 -2.5340 13 1 10.0547 -0.9280 -1.5970 14 6 9.4190 -2.5958 -2.7100 15 7 9.3270 -3.7201 -2.8443 16 6 10.3368 -0.5491 -3.6988 17 6 11.7488 -1.0737 -3.6579 18 1 12.0479 -1.7592 -2.8788 19 6 12.6593 -0.6777 -4.6146 20 7 13.8916 -1.1359 -4.5792 21 14 12.1423 0.5086 -5.9617 22 1 12.3829 1.9033 -5.5123 23 1 12.9349 0.2403 -7.1886 24 1 10.6982 0.3252 -6.2554 25 16 2.5436 -1.4248 -0.0077 26 1 -0.3633 -0.0055 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5091 29 1 1.9025 2.0874 -0.0004 30 1 6.0700 0.6711 1.2531 31 1 5.5595 -0.7879 2.1358 32 1 7.1012 -0.7799 1.2466 33 1 5.5117 -0.6921 -2.1400 34 1 6.1492 0.6796 -1.2017 35 1 7.9401 -0.7925 -0.4724 36 1 7.5968 -0.7983 -3.3997 37 1 8.2340 0.5731 -2.4608 38 1 9.8697 -0.8359 -4.6410 39 1 10.3503 0.5377 -3.6160 40 1 14.5322 -0.8571 -5.2520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583290661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:20 Heat of formation + Delta-G solvation = 28.298051 kcal Electronic energy + Delta-G solvation = -19946.978277 eV Core-core repulsion = 16886.950461 eV Total energy + Delta-G solvation = -3060.027816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80900 -38.98090 -37.43350 -35.70970 -34.77039 -33.39060 -32.32294 -28.99156 -27.96336 -26.47493 -25.25091 -23.82634 -23.27593 -22.38656 -19.62090 -19.12373 -18.86758 -18.51951 -16.71778 -16.49951 -16.30150 -15.92500 -15.51345 -15.37542 -15.05154 -14.71341 -14.44081 -14.19634 -14.16258 -13.94385 -13.77967 -13.60027 -13.51052 -13.31697 -13.10636 -12.89015 -12.55394 -12.33351 -12.16126 -12.07994 -12.04784 -11.93649 -11.65384 -11.51160 -11.25748 -10.72028 -10.52727 -10.18249 -9.67849 -9.34422 -8.23667 -6.28954 -0.26190 0.37853 0.79445 1.42840 1.46031 1.56100 1.86587 2.08256 2.15086 2.41713 3.01694 3.12745 3.29945 3.39146 3.96765 3.99777 4.03494 4.09839 4.19976 4.29099 4.37393 4.51048 4.68751 4.71802 4.73623 4.79880 4.84694 4.90160 4.93565 4.95350 5.05816 5.13693 5.25050 5.25309 5.40552 5.46906 5.64569 5.99918 6.27489 6.51017 6.78796 6.79738 6.93284 7.35418 8.93175 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.028631 B = 0.002650 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.728298 B =10563.781173 C =10915.900088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.223 4.223 3 C 0.012 3.988 4 N -0.488 5.488 5 C 0.042 3.958 6 C -0.010 4.010 7 H 0.097 0.903 8 C -0.136 4.136 9 C 0.083 3.917 10 N -0.700 5.700 11 C 0.076 3.924 12 C 0.026 3.974 13 H 0.119 0.881 14 C 0.263 3.737 15 N -0.515 5.515 16 C -0.004 4.004 17 C -0.529 4.529 18 H 0.031 0.969 19 C 0.002 3.998 20 N -0.954 5.954 21 Si 0.948 3.052 22 H -0.257 1.257 23 H -0.296 1.296 24 H -0.239 1.239 25 S 0.120 5.880 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.191 0.809 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.352 0.648 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.026 0.974 39 H 0.062 0.938 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.069 7.704 11.485 32.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.345 4.345 3 C -0.137 4.137 4 N -0.202 5.202 5 C -0.236 4.236 6 C -0.033 4.033 7 H 0.115 0.885 8 C -0.195 4.195 9 C -0.047 4.047 10 N -0.333 5.333 11 C -0.054 4.054 12 C 0.004 3.996 13 H 0.137 0.863 14 C -0.054 4.054 15 N -0.193 5.193 16 C -0.043 4.043 17 C -0.568 4.568 18 H 0.049 0.951 19 C -0.195 4.195 20 N -0.595 5.595 21 Si 0.771 3.229 22 H -0.182 1.182 23 H -0.223 1.223 24 H -0.162 1.162 25 S 0.376 5.624 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.207 0.793 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.172 0.828 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -29.034 4.758 10.911 31.379 hybrid contribution 0.600 2.169 -0.380 2.283 sum -28.434 6.927 10.531 31.103 Atomic orbital electron populations 1.20364 0.84659 1.04469 1.03952 1.26405 1.03013 0.94413 1.10621 1.22050 0.86640 1.01224 1.03829 1.66203 1.18683 1.19175 1.16124 1.27034 1.01069 0.91471 1.04006 1.19821 0.85647 1.00739 0.97048 0.88481 1.21777 1.00753 1.01648 0.95328 1.21738 0.89225 0.97091 0.96679 1.60431 1.03700 1.63135 1.06057 1.21929 0.90775 0.98524 0.94217 1.19048 0.97569 0.80349 1.02661 0.86315 1.29404 0.89827 0.95377 0.90749 1.80998 1.12200 1.14680 1.11372 1.19591 0.92787 0.98037 0.93889 1.21404 0.95691 1.27370 1.12290 0.95111 1.26037 0.94579 0.98296 1.00550 1.70087 1.05569 1.46794 1.37008 0.85694 0.79957 0.79478 0.77767 1.18167 1.22250 1.16175 1.84063 0.98570 1.11687 1.68070 0.89388 0.90517 0.88713 0.79261 0.92195 0.92163 0.90270 0.91816 0.93745 0.82769 0.90625 0.90621 0.95593 0.91970 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.42 71.24 0.74 0.17 16 2 C -0.22 -3.23 6.60 24.64 0.16 -3.07 16 3 C 0.01 0.21 11.25 83.66 0.94 1.15 16 4 N -0.49 -10.30 10.53 -191.44 -2.02 -12.31 16 5 C 0.04 0.82 5.91 88.52 0.52 1.35 16 6 C -0.01 -0.19 3.03 -11.54 -0.03 -0.22 16 7 H 0.10 1.79 8.12 -2.39 -0.02 1.77 16 8 C -0.14 -2.21 8.94 71.98 0.64 -1.57 16 9 C 0.08 1.67 5.12 86.30 0.44 2.11 16 10 N -0.70 -15.46 6.20 -513.91 -3.19 -18.65 16 11 C 0.08 1.85 5.05 86.30 0.44 2.29 16 12 C 0.03 0.84 2.35 -12.60 -0.03 0.81 16 13 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 14 C 0.26 10.66 13.67 89.44 1.22 11.88 16 15 N -0.52 -23.49 18.54 20.01 0.37 -23.12 16 16 C 0.00 -0.16 3.49 29.85 0.10 -0.06 16 17 C -0.53 -28.55 9.15 25.60 0.23 -28.32 16 18 H 0.03 1.87 7.84 -2.91 -0.02 1.85 16 19 C 0.00 0.11 5.47 84.65 0.46 0.57 16 20 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 21 Si 0.95 41.71 27.47 68.60 1.88 43.59 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 23 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.24 -9.45 6.54 99.48 0.65 -8.80 16 25 S 0.12 1.99 23.17 -56.49 -1.31 0.68 16 26 H 0.09 0.49 8.14 -2.39 -0.02 0.48 16 27 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.19 2.29 8.06 -2.91 -0.02 2.26 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.15 6.68 -2.39 -0.02 1.13 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.35 6.76 6.98 -89.70 -0.63 6.14 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.03 1.06 7.20 -2.39 -0.02 1.04 16 39 H 0.06 2.20 7.57 -2.39 -0.02 2.18 16 40 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -71.52 353.23 2.25 -69.28 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.36 Total: 12.30 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 5.85 Total: -12.89 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -4.53 Total: -112.95 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.88 Total: 43.59 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.31 Total: 0.68 kcal Total: -71.52 2.25 -69.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583290661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.573 kcal (2) G-P(sol) polarization free energy of solvation -71.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds