Wall clock time and date at job start Tue Mar 31 2020 06:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00265 * 2 1 4 4 C 1.53001 * 109.47535 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47038 * 64.99764 * 4 3 2 6 6 C 1.36907 * 120.00468 * 262.13291 * 5 4 3 7 7 H 1.07997 * 120.00146 * 143.30091 * 6 5 4 8 8 C 1.39028 * 119.99600 * 323.30056 * 6 5 4 9 9 N 1.31381 * 119.99779 * 337.59432 * 8 6 5 10 10 Si 1.86796 * 119.99777 * 157.59809 * 8 6 5 11 11 H 1.48500 * 109.47319 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47305 * 119.99962 * 10 8 6 13 13 H 1.48505 * 109.46882 * 239.99880 * 10 8 6 14 14 C 1.34777 * 119.99978 * 82.13474 * 5 4 3 15 15 O 1.21630 * 120.00034 * 5.61636 * 14 5 4 16 16 C 1.47430 * 120.00572 * 185.62236 * 14 5 4 17 17 C 1.39772 * 120.19049 * 322.06656 * 16 14 5 18 18 C 1.37771 * 119.89892 * 179.97438 * 17 16 14 19 19 C 1.38555 * 120.30732 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.80015 * 180.02562 * 19 18 17 21 21 C 1.38084 * 120.40178 * 359.72798 * 19 18 17 22 22 C 1.38676 * 120.08629 * 0.55467 * 21 19 18 23 23 O 1.35662 * 120.15136 * 179.72227 * 22 21 19 24 24 C 1.42898 * 117.00018 * 359.72213 * 23 22 21 25 25 H 1.08998 * 109.47268 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47152 * 299.99875 * 1 2 3 27 27 H 1.08998 * 109.47119 * 59.99204 * 1 2 3 28 28 H 1.09006 * 109.46714 * 60.00007 * 3 2 1 29 29 H 1.09004 * 109.47290 * 300.00757 * 3 2 1 30 30 H 1.09001 * 109.46523 * 304.99817 * 4 3 2 31 31 H 1.09002 * 109.47152 * 185.00184 * 4 3 2 32 32 H 0.97005 * 119.99431 * 180.02562 * 9 8 6 33 33 H 1.07997 * 120.05192 * 359.97438 * 17 16 14 34 34 H 1.08007 * 119.84531 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.46966 * 90.00441 * 20 19 18 36 36 H 1.09001 * 109.47072 * 210.00257 * 20 19 18 37 37 H 1.09002 * 109.47240 * 330.00141 * 20 19 18 38 38 H 1.07998 * 119.95196 * 180.29741 * 21 19 18 39 39 H 1.09001 * 109.47336 * 180.02562 * 24 23 22 40 40 H 1.09002 * 109.46862 * 60.00253 * 24 23 22 41 41 H 1.08998 * 109.47024 * 300.00087 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2519 -0.7759 -1.2926 7 1 4.0017 -1.3529 -2.1705 8 6 4.8547 -1.3941 -0.2030 9 7 5.5484 -0.6816 0.6556 10 14 4.6783 -3.2378 0.0402 11 1 3.8538 -3.8051 -1.0568 12 1 6.0221 -3.8696 0.0277 13 1 4.0181 -3.5042 1.3435 14 6 4.1088 1.3133 -2.3653 15 8 3.9630 2.5194 -2.3077 16 6 4.4309 0.6705 -3.6524 17 6 5.3208 -0.4064 -3.6971 18 6 5.6171 -1.0029 -4.9031 19 6 5.0366 -0.5406 -6.0731 20 6 5.3684 -1.2020 -7.3860 21 6 4.1511 0.5185 -6.0428 22 6 3.8455 1.1349 -4.8387 23 8 2.9800 2.1791 -4.8082 24 6 2.4235 2.5972 -6.0562 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6886 1.8463 0.8901 29 1 1.6886 1.8465 -0.8899 30 1 3.8514 0.5682 0.8410 31 1 3.9786 2.1765 0.0890 32 1 5.9692 -1.1130 1.4157 33 1 5.7753 -0.7704 -2.7875 34 1 6.3045 -1.8353 -4.9365 35 1 4.6653 -2.0139 -7.5718 36 1 5.2981 -0.4693 -8.1899 37 1 6.3820 -1.6011 -7.3458 38 1 3.6991 0.8698 -6.9586 39 1 1.7505 3.4384 -5.8903 40 1 1.8698 1.7709 -6.5021 41 1 3.2260 2.9015 -6.7281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590892338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:00 Heat of formation + Delta-G solvation = -79.212959 kcal Electronic energy + Delta-G solvation = -24607.237641 eV Core-core repulsion = 21067.502176 eV Total energy + Delta-G solvation = -3539.735465 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.89057 -38.27732 -37.08465 -36.72508 -34.60182 -32.30809 -31.54550 -29.67402 -29.14589 -27.57748 -26.40547 -25.70360 -24.67421 -22.41565 -21.63980 -21.00907 -19.17351 -17.82472 -16.69948 -16.21049 -15.65135 -15.45707 -15.26507 -15.22005 -14.66996 -14.30922 -14.11470 -13.78095 -13.57271 -13.47414 -13.32675 -13.03801 -12.57149 -12.04385 -11.99503 -11.78371 -11.62271 -11.41921 -11.22472 -11.08037 -10.96959 -10.90523 -10.73063 -10.50216 -10.36988 -10.27477 -9.95387 -9.06949 -8.91318 -8.38924 -8.14441 -7.60411 -7.39966 -6.31861 -3.91152 1.67539 2.03032 3.18895 3.29948 3.35125 3.74892 3.88962 4.18831 4.49410 4.53742 4.80289 5.05276 5.17272 5.31729 5.32010 5.37742 5.45369 5.67919 5.69449 5.72866 5.75410 5.76663 5.91068 5.95148 6.01681 6.06184 6.13009 6.27103 6.37993 6.39072 6.60694 6.71863 6.90624 6.96029 7.15176 7.28538 7.43663 7.53869 7.85474 7.93612 8.04310 8.45474 9.15990 9.60199 10.02271 10.71578 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012871 B = 0.007015 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.952003 B = 3990.591405 C = 5227.719962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.366 6.366 3 C 0.051 3.949 4 C 0.121 3.879 5 N -0.425 5.425 6 C -0.324 4.324 7 H 0.092 0.908 8 C 0.046 3.954 9 N -0.859 5.859 10 Si 0.909 3.091 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.280 1.280 14 C 0.515 3.485 15 O -0.593 6.593 16 C -0.130 4.130 17 C -0.027 4.027 18 C -0.178 4.178 19 C -0.048 4.048 20 C -0.111 4.111 21 C -0.231 4.231 22 C 0.162 3.838 23 O -0.291 6.291 24 C 0.027 3.973 25 H 0.077 0.923 26 H 0.030 0.970 27 H 0.031 0.969 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.268 0.732 33 H 0.164 0.836 34 H 0.120 0.880 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.121 0.879 39 H 0.094 0.906 40 H 0.049 0.951 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.339 -0.747 -9.352 10.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.027 4.027 4 C -0.002 4.002 5 N -0.142 5.142 6 C -0.452 4.452 7 H 0.110 0.890 8 C -0.159 4.159 9 N -0.496 5.496 10 Si 0.735 3.265 11 H -0.191 1.191 12 H -0.210 1.210 13 H -0.205 1.205 14 C 0.305 3.695 15 O -0.479 6.479 16 C -0.134 4.134 17 C -0.045 4.045 18 C -0.196 4.196 19 C -0.049 4.049 20 C -0.168 4.168 21 C -0.250 4.250 22 C 0.114 3.886 23 O -0.203 6.203 24 C -0.068 4.068 25 H 0.095 0.905 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.128 0.872 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.181 0.819 34 H 0.138 0.862 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.139 0.861 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.269 -0.229 -8.934 9.904 hybrid contribution -0.480 -0.799 -0.060 0.934 sum -4.750 -1.028 -8.993 10.222 Atomic orbital electron populations 1.22636 0.83422 1.01679 0.98838 1.88112 1.17410 1.27871 1.95056 1.23074 0.96598 0.84266 0.98777 1.21362 0.89015 0.99131 0.90739 1.43157 1.56238 1.08080 1.06731 1.19439 1.38343 0.83162 1.04219 0.89031 1.25239 0.94246 0.99630 0.96817 1.69964 1.28353 1.36838 1.14468 0.86170 0.77895 0.83520 0.78881 1.19125 1.20998 1.20531 1.17981 0.81016 0.86031 0.84490 1.90625 1.56625 1.14082 1.86555 1.19434 1.02075 0.99575 0.92283 1.21985 0.92809 0.90802 0.98922 1.20902 1.03971 1.02777 0.91997 1.19691 0.95231 0.94637 0.95328 1.20774 1.01764 1.00130 0.94089 1.20816 1.05911 1.01873 0.96355 1.19064 0.89522 0.86902 0.93064 1.86278 1.56658 1.46117 1.31265 1.22991 0.97994 0.99922 0.85936 0.90468 0.95162 0.94997 0.94241 0.93905 0.87245 0.91095 0.92148 0.81910 0.86226 0.91389 0.92067 0.91571 0.86080 0.88778 0.93274 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.37 -8.03 10.56 -35.23 -0.37 -8.40 16 3 C 0.05 1.09 6.21 37.16 0.23 1.32 16 4 C 0.12 2.98 5.27 -4.04 -0.02 2.96 16 5 N -0.42 -11.04 2.49 -116.03 -0.29 -11.33 16 6 C -0.32 -8.29 6.36 -14.99 -0.10 -8.38 16 7 H 0.09 2.33 6.10 -52.49 -0.32 2.01 16 8 C 0.05 1.17 4.85 -17.45 -0.08 1.08 16 9 N -0.86 -22.58 11.59 55.50 0.64 -21.94 16 10 Si 0.91 19.92 29.61 -169.99 -5.03 14.89 16 11 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 14 C 0.52 13.53 7.07 -12.52 -0.09 13.45 16 15 O -0.59 -16.74 15.74 -11.46 -0.18 -16.92 16 16 C -0.13 -3.01 5.41 -104.84 -0.57 -3.58 16 17 C -0.03 -0.56 7.66 -39.18 -0.30 -0.86 16 18 C -0.18 -3.09 9.67 -39.64 -0.38 -3.48 16 19 C -0.05 -0.77 5.88 -104.56 -0.62 -1.38 16 20 C -0.11 -1.27 10.00 36.01 0.36 -0.91 16 21 C -0.23 -3.88 8.67 -39.48 -0.34 -4.22 16 22 C 0.16 3.33 6.67 -38.68 -0.26 3.08 16 23 O -0.29 -5.93 9.21 -35.39 -0.33 -6.26 16 24 C 0.03 0.37 9.81 101.05 0.99 1.36 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.97 8.12 -51.93 -0.42 0.55 16 30 H 0.11 2.83 5.62 -51.93 -0.29 2.53 16 31 H 0.07 1.76 7.59 -51.93 -0.39 1.36 16 32 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 33 H 0.16 3.64 5.88 -52.49 -0.31 3.34 16 34 H 0.12 1.77 8.06 -52.48 -0.42 1.34 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 37 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.12 1.66 6.30 -52.49 -0.33 1.33 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.58 7.65 -51.93 -0.40 0.19 16 41 H 0.05 0.61 7.67 -51.93 -0.40 0.21 16 LS Contribution 341.39 15.07 5.14 5.14 Total: -1.00 -31.70 341.39 -6.27 -37.97 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.80 Total: 4.78 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -0.06 Total: 2.06 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.35 Total: -33.27 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.88 Total: -31.58 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.70 -6.27 -37.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.243 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds