Wall clock time and date at job start Tue Mar 31 2020 06:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00265 * 2 1 4 4 C 1.53001 * 109.47535 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47038 * 64.99764 * 4 3 2 6 6 C 1.36907 * 120.00468 * 262.13291 * 5 4 3 7 7 H 1.07997 * 120.00146 * 143.30091 * 6 5 4 8 8 C 1.39028 * 119.99600 * 323.30056 * 6 5 4 9 9 N 1.31381 * 119.99779 * 337.59432 * 8 6 5 10 10 Si 1.86796 * 119.99777 * 157.59809 * 8 6 5 11 11 H 1.48500 * 109.47319 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47305 * 119.99962 * 10 8 6 13 13 H 1.48505 * 109.46882 * 239.99880 * 10 8 6 14 14 C 1.34777 * 119.99978 * 82.13474 * 5 4 3 15 15 O 1.21630 * 120.00034 * 5.61636 * 14 5 4 16 16 C 1.47430 * 120.00572 * 185.62236 * 14 5 4 17 17 C 1.39772 * 120.19049 * 322.06656 * 16 14 5 18 18 C 1.37771 * 119.89892 * 179.97438 * 17 16 14 19 19 C 1.38555 * 120.30732 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.80015 * 180.02562 * 19 18 17 21 21 C 1.38084 * 120.40178 * 359.72798 * 19 18 17 22 22 C 1.38676 * 120.08629 * 0.55467 * 21 19 18 23 23 O 1.35662 * 120.15136 * 179.72227 * 22 21 19 24 24 C 1.42898 * 117.00018 * 359.72213 * 23 22 21 25 25 H 1.08998 * 109.47268 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47152 * 299.99875 * 1 2 3 27 27 H 1.08998 * 109.47119 * 59.99204 * 1 2 3 28 28 H 1.09006 * 109.46714 * 60.00007 * 3 2 1 29 29 H 1.09004 * 109.47290 * 300.00757 * 3 2 1 30 30 H 1.09001 * 109.46523 * 304.99817 * 4 3 2 31 31 H 1.09002 * 109.47152 * 185.00184 * 4 3 2 32 32 H 0.97005 * 119.99431 * 180.02562 * 9 8 6 33 33 H 1.07997 * 120.05192 * 359.97438 * 17 16 14 34 34 H 1.08007 * 119.84531 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.46966 * 90.00441 * 20 19 18 36 36 H 1.09001 * 109.47072 * 210.00257 * 20 19 18 37 37 H 1.09002 * 109.47240 * 330.00141 * 20 19 18 38 38 H 1.07998 * 119.95196 * 180.29741 * 21 19 18 39 39 H 1.09001 * 109.47336 * 180.02562 * 24 23 22 40 40 H 1.09002 * 109.46862 * 60.00253 * 24 23 22 41 41 H 1.08998 * 109.47024 * 300.00087 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2519 -0.7759 -1.2926 7 1 4.0017 -1.3529 -2.1705 8 6 4.8547 -1.3941 -0.2030 9 7 5.5484 -0.6816 0.6556 10 14 4.6783 -3.2378 0.0402 11 1 3.8538 -3.8051 -1.0568 12 1 6.0221 -3.8696 0.0277 13 1 4.0181 -3.5042 1.3435 14 6 4.1088 1.3133 -2.3653 15 8 3.9630 2.5194 -2.3077 16 6 4.4309 0.6705 -3.6524 17 6 5.3208 -0.4064 -3.6971 18 6 5.6171 -1.0029 -4.9031 19 6 5.0366 -0.5406 -6.0731 20 6 5.3684 -1.2020 -7.3860 21 6 4.1511 0.5185 -6.0428 22 6 3.8455 1.1349 -4.8387 23 8 2.9800 2.1791 -4.8082 24 6 2.4235 2.5972 -6.0562 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6886 1.8463 0.8901 29 1 1.6886 1.8465 -0.8899 30 1 3.8514 0.5682 0.8410 31 1 3.9786 2.1765 0.0890 32 1 5.9692 -1.1130 1.4157 33 1 5.7753 -0.7704 -2.7875 34 1 6.3045 -1.8353 -4.9365 35 1 4.6653 -2.0139 -7.5718 36 1 5.2981 -0.4693 -8.1899 37 1 6.3820 -1.6011 -7.3458 38 1 3.6991 0.8698 -6.9586 39 1 1.7505 3.4384 -5.8903 40 1 1.8698 1.7709 -6.5021 41 1 3.2260 2.9015 -6.7281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590892338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:00 Heat of formation + Delta-G solvation = -99.030528 kcal Electronic energy + Delta-G solvation = -24608.096996 eV Core-core repulsion = 21067.502176 eV Total energy + Delta-G solvation = -3540.594820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.43221 -40.03419 -38.58852 -38.29836 -36.56802 -33.70941 -33.50100 -31.13073 -30.80333 -28.72664 -27.71471 -27.27615 -26.48359 -24.08952 -23.07569 -22.52407 -21.03236 -19.57056 -18.13308 -17.95238 -17.25970 -17.10163 -16.78783 -16.63872 -16.40993 -16.04519 -15.74292 -15.36055 -15.04303 -14.95332 -14.50934 -14.34682 -14.25267 -13.68970 -13.29962 -13.11972 -13.00102 -12.94091 -12.86520 -12.75910 -12.55719 -12.46391 -12.24558 -12.07032 -11.88649 -11.82262 -11.63794 -10.97113 -10.57349 -10.31682 -9.61371 -9.43040 -9.01600 -8.25942 -5.90858 0.19843 0.59117 1.43396 1.50085 1.61874 2.13214 2.35830 2.47363 2.84135 2.94605 2.98729 3.30789 3.88542 4.04288 4.20668 4.22180 4.27064 4.36383 4.39207 4.45616 4.48320 4.51020 4.58091 4.59922 4.67913 4.74102 4.80478 4.86028 4.89172 4.92820 5.03830 5.27863 5.32041 5.41201 5.52606 5.60406 5.71749 5.99298 6.03721 6.36483 6.47335 6.59163 7.18549 7.63318 8.06042 8.79079 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012871 B = 0.007015 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.952003 B = 3990.591405 C = 5227.719962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.065 3.935 4 C 0.119 3.881 5 N -0.434 5.434 6 C -0.328 4.328 7 H 0.090 0.910 8 C 0.009 3.991 9 N -0.892 5.892 10 Si 0.972 3.028 11 H -0.262 1.262 12 H -0.274 1.274 13 H -0.282 1.282 14 C 0.501 3.499 15 O -0.630 6.630 16 C -0.180 4.180 17 C -0.039 4.039 18 C -0.179 4.179 19 C -0.033 4.033 20 C -0.109 4.109 21 C -0.224 4.224 22 C 0.150 3.850 23 O -0.331 6.331 24 C 0.017 3.983 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.271 0.729 33 H 0.137 0.863 34 H 0.148 0.852 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.159 0.841 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.044 -2.596 -12.044 13.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.013 4.013 4 C -0.005 4.005 5 N -0.150 5.150 6 C -0.455 4.455 7 H 0.107 0.893 8 C -0.193 4.193 9 N -0.530 5.530 10 Si 0.797 3.203 11 H -0.186 1.186 12 H -0.200 1.200 13 H -0.208 1.208 14 C 0.293 3.707 15 O -0.518 6.518 16 C -0.183 4.183 17 C -0.058 4.058 18 C -0.197 4.197 19 C -0.033 4.033 20 C -0.165 4.165 21 C -0.242 4.242 22 C 0.103 3.897 23 O -0.244 6.244 24 C -0.077 4.077 25 H 0.114 0.886 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.155 0.845 34 H 0.166 0.834 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.176 0.824 39 H 0.128 0.872 40 H 0.088 0.912 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.985 -2.091 -11.638 12.832 hybrid contribution -0.293 -0.173 0.666 0.748 sum -5.278 -2.263 -10.972 12.384 Atomic orbital electron populations 1.22895 0.80541 1.03447 1.00213 1.88041 1.20597 1.27714 1.95308 1.22807 0.94474 0.84642 0.99345 1.21315 0.91326 0.97738 0.90097 1.43375 1.56193 1.08419 1.07055 1.19521 1.38524 0.83004 1.04492 0.89288 1.25968 0.93600 1.03506 0.96271 1.70053 1.29265 1.38576 1.15080 0.85200 0.78101 0.78569 0.78472 1.18601 1.20007 1.20754 1.18642 0.80382 0.85867 0.85855 1.90553 1.58413 1.15505 1.87376 1.19413 1.05239 1.01829 0.91821 1.21754 0.93211 0.91157 0.99689 1.21196 1.04252 1.03044 0.91179 1.20262 0.92892 0.93350 0.96833 1.20885 1.03123 1.00868 0.91606 1.21217 1.05519 1.01381 0.96119 1.19260 0.89645 0.87312 0.93450 1.86217 1.56869 1.46230 1.35060 1.23360 0.98924 1.01243 0.84199 0.88561 0.92733 0.94580 0.91194 0.95543 0.88677 0.92741 0.91913 0.84508 0.83445 0.89543 0.89933 0.90004 0.82389 0.87245 0.91157 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.05 16 2 O -0.40 -17.58 10.56 -148.98 -1.57 -19.15 16 3 C 0.06 2.89 6.21 71.98 0.45 3.34 16 4 C 0.12 6.19 5.27 86.38 0.46 6.64 16 5 N -0.43 -23.82 2.49 -639.25 -1.59 -25.42 16 6 C -0.33 -17.45 6.36 84.09 0.54 -16.92 16 7 H 0.09 4.70 6.10 -2.91 -0.02 4.69 16 8 C 0.01 0.47 4.85 84.95 0.41 0.89 16 9 N -0.89 -48.59 11.59 21.68 0.25 -48.34 16 10 Si 0.97 41.27 29.61 68.60 2.03 43.31 16 11 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 12 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 13 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 14 C 0.50 27.96 7.07 86.66 0.61 28.58 16 15 O -0.63 -37.90 15.74 11.85 0.19 -37.71 16 16 C -0.18 -8.65 5.41 -20.01 -0.11 -8.76 16 17 C -0.04 -1.70 7.66 22.53 0.17 -1.52 16 18 C -0.18 -5.90 9.67 22.23 0.22 -5.69 16 19 C -0.03 -0.93 5.88 -19.82 -0.12 -1.04 16 20 C -0.11 -1.91 10.00 71.24 0.71 -1.19 16 21 C -0.22 -6.92 8.67 22.34 0.19 -6.73 16 22 C 0.15 6.22 6.67 22.85 0.15 6.37 16 23 O -0.33 -13.60 9.21 -73.80 -0.68 -14.28 16 24 C 0.02 0.43 9.81 113.37 1.11 1.54 16 25 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 29 H 0.03 1.25 8.12 -2.38 -0.02 1.23 16 30 H 0.10 5.18 5.62 -2.39 -0.01 5.17 16 31 H 0.05 2.91 7.59 -2.39 -0.02 2.89 16 32 H 0.27 13.85 8.31 -92.70 -0.77 13.08 16 33 H 0.14 6.47 5.88 -2.91 -0.02 6.46 16 34 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 37 H 0.08 1.24 8.08 -2.39 -0.02 1.23 16 38 H 0.16 3.62 6.30 -2.91 -0.02 3.60 16 39 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.07 1.47 7.65 -2.39 -0.02 1.45 16 41 H 0.07 1.48 7.67 -2.39 -0.02 1.47 16 Total: -1.00 -73.81 341.39 5.70 -68.11 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 1.03 Total: 25.93 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 6.04 Total: 7.55 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -1.34 Total: -73.76 kcal Atomic # 8 Polarization: -69.08 SS G_CDS: -2.07 Total: -71.14 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.31 kcal Total: -73.81 5.70 -68.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.916 kcal (2) G-P(sol) polarization free energy of solvation -73.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds