Wall clock time and date at job start Tue Mar 31 2020 06:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34221 * 125.43807 * 2 1 4 4 C 1.33645 * 110.91005 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.80106 * 179.97438 * 4 3 2 6 6 C 1.36418 * 108.39740 * 0.02562 * 4 3 2 7 7 C 1.47382 * 127.19190 * 179.97438 * 6 4 3 8 8 O 1.21613 * 119.99817 * 90.02385 * 7 6 4 9 9 N 1.34780 * 119.99842 * 270.02027 * 7 6 4 10 10 C 1.47424 * 125.64821 * 0.02917 * 9 7 6 11 11 C 1.54911 * 104.82935 * 155.83434 * 10 9 7 12 12 C 1.55151 * 101.58129 * 37.00722 * 11 10 9 13 13 O 1.42896 * 110.72099 * 83.04121 * 12 11 10 14 14 C 1.50702 * 110.71661 * 206.13451 * 12 11 10 15 15 H 1.08002 * 120.00299 * 116.16247 * 14 12 11 16 16 C 1.37884 * 119.99942 * 295.87805 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.47317 * 125.61142 * 180.16083 * 9 7 6 23 23 C 1.34175 * 125.44193 * 180.29183 * 2 1 3 24 24 C 1.50701 * 127.02019 * 0.02562 * 23 2 1 25 25 H 1.09002 * 109.47416 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47145 * 120.02636 * 1 2 3 27 27 H 1.08998 * 109.47303 * 240.02590 * 1 2 3 28 28 H 1.08996 * 109.46992 * 269.99984 * 5 4 3 29 29 H 1.08998 * 109.46831 * 29.99992 * 5 4 3 30 30 H 1.09002 * 109.46818 * 150.00417 * 5 4 3 31 31 H 1.08998 * 110.36772 * 36.99628 * 10 9 7 32 32 H 1.09001 * 110.45455 * 274.71842 * 10 9 7 33 33 H 1.09001 * 111.00421 * 278.92695 * 11 10 9 34 34 H 1.09001 * 111.03113 * 155.09723 * 11 10 9 35 35 H 0.96700 * 114.00666 * 63.83498 * 13 12 11 36 36 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 37 37 H 1.09008 * 110.06063 * 61.76074 * 22 9 7 38 38 H 1.08998 * 109.85697 * 300.49762 * 22 9 7 39 39 H 1.08998 * 109.47406 * 270.13415 * 24 23 2 40 40 H 1.09004 * 109.47073 * 30.13479 * 24 23 2 41 41 H 1.09002 * 109.46992 * 150.13728 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0936 0.0000 4 6 3.5789 0.7583 0.0006 5 6 4.7389 1.7204 0.0002 6 6 3.6710 -0.6028 0.0004 7 6 4.9025 -1.4124 0.0003 8 8 5.4103 -1.7470 1.0535 9 7 5.4658 -1.7821 -1.1670 10 6 4.9585 -1.4470 -2.5100 11 6 6.1990 -1.5287 -3.4342 12 6 6.9641 -2.7321 -2.8230 13 8 6.4426 -3.9670 -3.3182 14 6 8.4400 -2.6262 -3.1087 15 1 9.1407 -2.5110 -2.2949 16 6 8.8964 -2.6821 -4.4086 17 7 8.0432 -2.8224 -5.3995 18 14 10.7265 -2.5585 -4.7620 19 1 11.4683 -2.4073 -3.4845 20 1 11.1811 -3.7908 -5.4550 21 1 10.9850 -1.3798 -5.6276 22 6 6.6891 -2.5902 -1.3112 23 6 2.2850 -1.0931 -0.0056 24 6 1.8309 -2.5301 -0.0134 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3633 -0.5142 -0.8898 27 1 -0.3634 -0.5134 0.8902 28 1 5.0188 1.9516 -1.0275 29 1 4.4503 2.6377 0.5133 30 1 5.5866 1.2675 0.5145 31 1 4.5448 -0.4387 -2.5186 32 1 4.2039 -2.1686 -2.8232 33 1 6.7925 -0.6165 -3.3731 34 1 5.9068 -1.7338 -4.4641 35 1 6.5563 -4.0883 -4.2708 36 1 8.3643 -2.8614 -6.3141 37 1 6.5412 -3.5748 -0.8673 38 1 7.5255 -2.0853 -0.8280 39 1 1.7187 -2.8813 1.0123 40 1 0.8741 -2.6059 -0.5301 41 1 2.5714 -3.1423 -0.5281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592837085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:32 Heat of formation + Delta-G solvation = -80.752270 kcal Electronic energy + Delta-G solvation = -24336.672724 eV Core-core repulsion = 20796.870509 eV Total energy + Delta-G solvation = -3539.802215 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.50754 -39.26069 -37.18390 -34.33377 -34.16915 -32.95499 -32.20187 -29.86738 -29.66068 -28.46841 -27.92242 -25.48687 -24.38745 -23.06758 -21.62501 -19.81096 -19.39188 -18.38116 -17.25702 -16.83685 -16.40792 -15.68530 -15.20652 -14.95649 -14.80603 -14.22861 -14.01542 -13.57465 -13.53614 -13.20463 -13.02726 -12.93023 -12.80175 -12.72893 -12.46774 -12.19866 -12.15605 -12.02288 -11.60550 -11.39665 -11.37308 -11.15380 -10.91553 -10.62771 -10.47823 -10.14064 -9.68445 -9.37955 -9.22188 -8.69713 -8.26133 -8.19065 -8.02743 -6.31520 -4.38790 1.67960 2.29923 2.79508 2.93708 3.17349 3.26642 3.31349 3.61916 4.25128 4.48608 4.82464 4.89072 4.96108 5.08738 5.14244 5.27873 5.32574 5.44448 5.49397 5.57757 5.66216 5.69033 5.76288 5.81057 5.89014 5.93393 5.98821 6.04676 6.19372 6.26267 6.43936 6.51920 6.67941 6.89336 6.96039 7.17005 7.27558 7.32446 7.71220 7.98737 8.08174 8.59955 8.64985 9.29146 9.39873 10.76272 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025485 B = 0.004170 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.420865 B = 6712.661986 C = 6911.082232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.022 4.022 3 O -0.174 6.174 4 C 0.034 3.966 5 C -0.077 4.077 6 C -0.207 4.207 7 C 0.597 3.403 8 O -0.548 6.548 9 N -0.598 5.598 10 C 0.101 3.899 11 C -0.135 4.135 12 C 0.248 3.752 13 O -0.586 6.586 14 C -0.534 4.534 15 H 0.065 0.935 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.122 3.878 23 C -0.144 4.144 24 C -0.084 4.084 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.384 0.616 36 H 0.268 0.732 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.948 7.052 5.192 15.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.071 4.071 3 O -0.072 6.072 4 C -0.018 4.018 5 C -0.133 4.133 6 C -0.212 4.212 7 C 0.385 3.615 8 O -0.427 6.427 9 N -0.330 5.330 10 C -0.022 4.022 11 C -0.174 4.174 12 C 0.207 3.793 13 O -0.395 6.395 14 C -0.573 4.573 15 H 0.084 0.916 16 C -0.130 4.130 17 N -0.537 5.537 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 C 0.001 3.999 23 C -0.146 4.146 24 C -0.140 4.140 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.235 0.765 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.975 7.069 6.243 16.041 hybrid contribution 1.153 0.040 -0.985 1.517 sum -11.821 7.109 5.259 14.763 Atomic orbital electron populations 1.20257 0.84921 1.03759 1.03456 1.21898 0.93624 0.83318 1.08223 1.83623 1.15992 1.35113 1.72447 1.22416 0.83088 0.93396 1.02853 1.20418 0.91774 0.97002 1.04153 1.21029 0.93983 0.93125 1.13042 1.16906 0.82392 0.79485 0.82753 1.90762 1.64169 1.56874 1.30904 1.48666 1.27223 1.51594 1.05502 1.22428 0.98479 0.98944 0.82301 1.23307 0.94012 1.01175 0.98859 1.19450 0.91763 0.81566 0.86492 1.86111 1.83502 1.40156 1.29766 1.21581 0.91697 1.51000 0.92992 0.91649 1.24985 0.98596 0.93505 0.95904 1.69651 1.34276 1.50024 0.99704 0.86359 0.84390 0.77759 0.78468 1.19563 1.20743 1.20823 1.22170 0.84902 0.94178 0.98643 1.21039 0.90191 0.96411 1.06938 1.20182 1.01251 0.90317 1.02269 0.90666 0.89744 0.89855 0.89365 0.90106 0.89006 0.92430 0.92060 0.91465 0.89495 0.76472 0.92206 0.91930 0.90832 0.91203 0.91330 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 9.94 36.00 0.36 -0.20 16 2 C -0.02 -0.29 7.28 -35.74 -0.26 -0.55 16 3 O -0.17 -2.49 10.52 7.66 0.08 -2.40 16 4 C 0.03 0.51 7.37 -34.96 -0.26 0.25 16 5 C -0.08 -0.94 10.24 36.01 0.37 -0.57 16 6 C -0.21 -3.61 4.97 -103.28 -0.51 -4.12 16 7 C 0.60 12.22 7.29 -12.54 -0.09 12.13 16 8 O -0.55 -12.86 17.43 5.27 0.09 -12.76 16 9 N -0.60 -12.32 3.33 -171.56 -0.57 -12.89 16 10 C 0.10 1.92 6.67 -2.53 -0.02 1.91 16 11 C -0.13 -2.90 5.58 -24.58 -0.14 -3.04 16 12 C 0.25 5.94 0.85 -89.94 -0.08 5.87 16 13 O -0.59 -14.68 13.07 -35.23 -0.46 -15.14 16 14 C -0.53 -13.84 8.21 -34.44 -0.28 -14.12 16 15 H 0.07 1.70 7.55 -52.49 -0.40 1.31 16 16 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 17 N -0.90 -22.75 10.67 55.43 0.59 -22.16 16 18 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 C 0.12 2.79 6.25 -2.90 -0.02 2.77 16 23 C -0.14 -2.17 6.37 -102.50 -0.65 -2.82 16 24 C -0.08 -1.08 10.15 36.01 0.37 -0.72 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.21 7.93 -51.93 -0.41 0.80 16 31 H 0.06 0.98 7.69 -51.93 -0.40 0.58 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16 34 H 0.09 1.94 7.65 -51.93 -0.40 1.54 16 35 H 0.38 9.64 7.22 45.56 0.33 9.97 16 36 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 37 H 0.06 1.48 8.07 -51.92 -0.42 1.06 16 38 H 0.07 1.69 7.64 -51.93 -0.40 1.29 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.69 7.90 -51.93 -0.41 0.28 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 345.47 15.07 5.21 5.21 Total: -1.00 -29.94 345.47 -6.83 -36.77 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -5.44 Total: 9.84 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.31 Total: -1.47 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.02 Total: -35.05 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.29 Total: -30.31 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.94 -6.83 -36.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.984 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds