Wall clock time and date at job start Tue Mar 31 2020 06:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34221 * 125.43807 * 2 1 4 4 C 1.33645 * 110.91005 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.80106 * 179.97438 * 4 3 2 6 6 C 1.36418 * 108.39740 * 0.02562 * 4 3 2 7 7 C 1.47382 * 127.19190 * 179.97438 * 6 4 3 8 8 O 1.21613 * 119.99817 * 90.02385 * 7 6 4 9 9 N 1.34780 * 119.99842 * 270.02027 * 7 6 4 10 10 C 1.47424 * 125.64821 * 0.02917 * 9 7 6 11 11 C 1.54911 * 104.82935 * 155.83434 * 10 9 7 12 12 C 1.55151 * 101.58129 * 37.00722 * 11 10 9 13 13 O 1.42896 * 110.72099 * 83.04121 * 12 11 10 14 14 C 1.50702 * 110.71661 * 206.13451 * 12 11 10 15 15 H 1.08002 * 120.00299 * 116.16247 * 14 12 11 16 16 C 1.37884 * 119.99942 * 295.87805 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.47317 * 125.61142 * 180.16083 * 9 7 6 23 23 C 1.34175 * 125.44193 * 180.29183 * 2 1 3 24 24 C 1.50701 * 127.02019 * 0.02562 * 23 2 1 25 25 H 1.09002 * 109.47416 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47145 * 120.02636 * 1 2 3 27 27 H 1.08998 * 109.47303 * 240.02590 * 1 2 3 28 28 H 1.08996 * 109.46992 * 269.99984 * 5 4 3 29 29 H 1.08998 * 109.46831 * 29.99992 * 5 4 3 30 30 H 1.09002 * 109.46818 * 150.00417 * 5 4 3 31 31 H 1.08998 * 110.36772 * 36.99628 * 10 9 7 32 32 H 1.09001 * 110.45455 * 274.71842 * 10 9 7 33 33 H 1.09001 * 111.00421 * 278.92695 * 11 10 9 34 34 H 1.09001 * 111.03113 * 155.09723 * 11 10 9 35 35 H 0.96700 * 114.00666 * 63.83498 * 13 12 11 36 36 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 37 37 H 1.09008 * 110.06063 * 61.76074 * 22 9 7 38 38 H 1.08998 * 109.85697 * 300.49762 * 22 9 7 39 39 H 1.08998 * 109.47406 * 270.13415 * 24 23 2 40 40 H 1.09004 * 109.47073 * 30.13479 * 24 23 2 41 41 H 1.09002 * 109.46992 * 150.13728 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0936 0.0000 4 6 3.5789 0.7583 0.0006 5 6 4.7389 1.7204 0.0002 6 6 3.6710 -0.6028 0.0004 7 6 4.9025 -1.4124 0.0003 8 8 5.4103 -1.7470 1.0535 9 7 5.4658 -1.7821 -1.1670 10 6 4.9585 -1.4470 -2.5100 11 6 6.1990 -1.5287 -3.4342 12 6 6.9641 -2.7321 -2.8230 13 8 6.4426 -3.9670 -3.3182 14 6 8.4400 -2.6262 -3.1087 15 1 9.1407 -2.5110 -2.2949 16 6 8.8964 -2.6821 -4.4086 17 7 8.0432 -2.8224 -5.3995 18 14 10.7265 -2.5585 -4.7620 19 1 11.4683 -2.4073 -3.4845 20 1 11.1811 -3.7908 -5.4550 21 1 10.9850 -1.3798 -5.6276 22 6 6.6891 -2.5902 -1.3112 23 6 2.2850 -1.0931 -0.0056 24 6 1.8309 -2.5301 -0.0134 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3633 -0.5142 -0.8898 27 1 -0.3634 -0.5134 0.8902 28 1 5.0188 1.9516 -1.0275 29 1 4.4503 2.6377 0.5133 30 1 5.5866 1.2675 0.5145 31 1 4.5448 -0.4387 -2.5186 32 1 4.2039 -2.1686 -2.8232 33 1 6.7925 -0.6165 -3.3731 34 1 5.9068 -1.7338 -4.4641 35 1 6.5563 -4.0883 -4.2708 36 1 8.3643 -2.8614 -6.3141 37 1 6.5412 -3.5748 -0.8673 38 1 7.5255 -2.0853 -0.8280 39 1 1.7187 -2.8813 1.0123 40 1 0.8741 -2.6059 -0.5301 41 1 2.5714 -3.1423 -0.5281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592837085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:31 Heat of formation + Delta-G solvation = -100.142787 kcal Electronic energy + Delta-G solvation = -24337.513560 eV Core-core repulsion = 20796.870509 eV Total energy + Delta-G solvation = -3540.643051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.62097 -40.95140 -38.97841 -36.15135 -35.23943 -34.19170 -34.07111 -31.50065 -30.59855 -30.17681 -29.11439 -27.24829 -25.52091 -24.55484 -23.13108 -21.53849 -20.71054 -19.82444 -19.14599 -18.25558 -17.57357 -17.10938 -16.94628 -16.69748 -16.29855 -15.99472 -15.38769 -14.84847 -14.67825 -14.46358 -14.41979 -13.98325 -13.89222 -13.87353 -13.62796 -13.49212 -13.43241 -13.31167 -13.26306 -13.16110 -13.02693 -12.68390 -12.48505 -12.26984 -12.22655 -12.04020 -11.39219 -11.20516 -10.64960 -10.46419 -10.16021 -9.75634 -9.26645 -8.26200 -6.40561 0.56260 1.15528 1.35056 1.40602 1.45297 1.55148 1.73210 2.05752 2.39591 2.99168 3.42052 3.52845 3.80261 3.88505 3.94223 4.04142 4.23441 4.28702 4.34081 4.38739 4.51523 4.53139 4.58257 4.63875 4.66238 4.78459 4.84880 4.85579 4.87583 4.95432 5.04787 5.11038 5.14431 5.22226 5.41970 5.47369 5.52406 5.74473 6.04099 6.07580 6.44422 6.63012 6.97073 7.30034 7.40370 8.80504 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025485 B = 0.004170 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.420865 B = 6712.661986 C = 6911.082232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.008 4.008 3 O -0.172 6.172 4 C 0.040 3.960 5 C -0.079 4.079 6 C -0.246 4.246 7 C 0.602 3.398 8 O -0.587 6.587 9 N -0.599 5.599 10 C 0.114 3.886 11 C -0.123 4.123 12 C 0.238 3.762 13 O -0.594 6.594 14 C -0.563 4.563 15 H 0.053 0.947 16 C 0.039 3.961 17 N -0.907 5.907 18 Si 0.960 3.040 19 H -0.276 1.276 20 H -0.279 1.279 21 H -0.274 1.274 22 C 0.128 3.872 23 C -0.171 4.171 24 C -0.080 4.080 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.382 0.618 36 H 0.273 0.727 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.706 8.593 4.670 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.057 4.057 3 O -0.069 6.069 4 C -0.012 4.012 5 C -0.135 4.135 6 C -0.250 4.250 7 C 0.391 3.609 8 O -0.469 6.469 9 N -0.330 5.330 10 C -0.008 4.008 11 C -0.161 4.161 12 C 0.198 3.802 13 O -0.403 6.403 14 C -0.601 4.601 15 H 0.072 0.928 16 C -0.162 4.162 17 N -0.546 5.546 18 Si 0.786 3.214 19 H -0.200 1.200 20 H -0.204 1.204 21 H -0.200 1.200 22 C 0.005 3.995 23 C -0.173 4.173 24 C -0.136 4.136 25 H 0.109 0.891 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.128 0.872 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.233 0.767 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.759 8.621 5.708 18.020 hybrid contribution 1.666 -0.448 -0.804 1.903 sum -13.093 8.173 4.903 16.195 Atomic orbital electron populations 1.20530 0.81233 1.05418 1.05184 1.22730 0.95386 0.82151 1.05385 1.83670 1.15595 1.35592 1.72092 1.22790 0.84108 0.92998 1.01300 1.20537 0.90302 0.97439 1.05177 1.20945 0.93601 0.94059 1.16421 1.17370 0.82860 0.78858 0.81802 1.90723 1.65537 1.58469 1.32170 1.48688 1.26561 1.51293 1.06427 1.22358 0.97233 1.00502 0.80696 1.23091 0.94610 0.99672 0.98767 1.19564 0.91522 0.82005 0.87104 1.86100 1.83565 1.41056 1.29588 1.21755 0.92605 1.52452 0.93262 0.92846 1.25577 1.02110 0.92967 0.95578 1.69701 1.35499 1.49432 0.99949 0.85477 0.80043 0.77906 0.77989 1.20028 1.20443 1.19952 1.21942 0.85874 0.93691 0.97955 1.21303 0.89313 0.97908 1.08760 1.20194 1.01946 0.88905 1.02580 0.89085 0.87842 0.88076 0.88047 0.87245 0.90555 0.89850 0.91700 0.91920 0.90184 0.76742 0.91769 0.93641 0.91676 0.90900 0.88069 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 9.94 71.23 0.71 -0.13 16 2 C -0.01 -0.19 7.28 24.76 0.18 -0.01 16 3 O -0.17 -4.46 10.52 4.48 0.05 -4.41 16 4 C 0.04 1.15 7.37 25.26 0.19 1.33 16 5 C -0.08 -1.79 10.24 71.24 0.73 -1.06 16 6 C -0.25 -8.44 4.97 -18.99 -0.09 -8.54 16 7 C 0.60 25.13 7.29 86.65 0.63 25.76 16 8 O -0.59 -28.59 17.43 -4.07 -0.07 -28.66 16 9 N -0.60 -25.11 3.33 -814.95 -2.72 -27.83 16 10 C 0.11 4.29 6.67 86.86 0.58 4.87 16 11 C -0.12 -5.29 5.58 31.98 0.18 -5.11 16 12 C 0.24 11.68 0.85 -10.35 -0.01 11.67 16 13 O -0.59 -30.37 13.07 -148.98 -1.95 -32.32 16 14 C -0.56 -29.69 8.21 25.60 0.21 -29.48 16 15 H 0.05 2.87 7.55 -2.91 -0.02 2.85 16 16 C 0.04 1.98 5.28 84.66 0.45 2.43 16 17 N -0.91 -45.72 10.67 21.45 0.23 -45.50 16 18 Si 0.96 40.94 29.54 68.60 2.03 42.97 16 19 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 C 0.13 6.05 6.25 86.67 0.54 6.59 16 23 C -0.17 -4.90 6.37 -18.49 -0.12 -5.02 16 24 C -0.08 -1.97 10.15 71.24 0.72 -1.25 16 25 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 1.99 7.93 -2.39 -0.02 1.97 16 31 H 0.08 2.72 7.69 -2.39 -0.02 2.70 16 32 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.06 2.73 8.04 -2.39 -0.02 2.71 16 34 H 0.08 3.56 7.65 -2.39 -0.02 3.54 16 35 H 0.38 19.50 7.22 -74.06 -0.53 18.96 16 36 H 0.27 13.02 8.31 -92.70 -0.77 12.25 16 37 H 0.05 2.26 8.07 -2.38 -0.02 2.24 16 38 H 0.06 3.14 7.64 -2.39 -0.02 3.12 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.10 1.76 7.90 -2.38 -0.02 1.74 16 41 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -65.43 345.47 2.97 -62.46 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.51 Total: 31.23 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 4.89 Total: 2.06 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -2.49 Total: -73.33 kcal Atomic # 8 Polarization: -63.42 SS G_CDS: -1.97 Total: -65.40 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -65.43 2.97 -62.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.681 kcal (2) G-P(sol) polarization free energy of solvation -65.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds