Wall clock time and date at job start Tue Mar 31 2020 06:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34215 * 125.44054 * 2 1 4 4 C 1.33644 * 110.91110 * 180.15214 * 3 2 1 5 5 C 1.50706 * 125.80477 * 179.85581 * 4 3 2 6 6 C 1.36423 * 108.39673 * 359.58984 * 4 3 2 7 7 C 1.47381 * 127.19046 * 180.22000 * 6 4 3 8 8 O 1.21613 * 119.99486 * 90.03001 * 7 6 4 9 9 N 1.34772 * 120.00271 * 270.02193 * 7 6 4 10 10 C 1.47425 * 125.64411 * 0.03240 * 9 7 6 11 11 C 1.54917 * 104.82858 * 204.08516 * 10 9 7 12 12 C 1.55154 * 101.58367 * 322.99248 * 11 10 9 13 13 O 1.42900 * 110.71983 * 277.13731 * 12 11 10 14 14 C 1.50694 * 110.72134 * 154.04034 * 12 11 10 15 15 H 1.08007 * 120.00248 * 241.45301 * 14 12 11 16 16 C 1.37883 * 120.00154 * 61.45472 * 14 12 11 17 17 N 1.31508 * 119.99593 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 120.00179 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47049 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47461 * 119.99774 * 18 16 14 21 21 H 1.48504 * 109.47216 * 239.99722 * 18 16 14 22 22 C 1.47018 * 125.65134 * 179.71658 * 9 7 6 23 23 C 1.34178 * 125.43754 * 179.69989 * 2 1 3 24 24 C 1.50699 * 127.02416 * 0.02562 * 23 2 1 25 25 H 1.08997 * 109.46838 * 270.30324 * 1 2 3 26 26 H 1.09003 * 109.47223 * 30.30525 * 1 2 3 27 27 H 1.08993 * 109.47197 * 150.30350 * 1 2 3 28 28 H 1.08999 * 109.47015 * 269.69247 * 5 4 3 29 29 H 1.09000 * 109.46646 * 29.68400 * 5 4 3 30 30 H 1.09000 * 109.47248 * 149.69117 * 5 4 3 31 31 H 1.08999 * 110.37242 * 322.92187 * 10 9 7 32 32 H 1.09006 * 110.36928 * 85.14327 * 10 9 7 33 33 H 1.09008 * 111.00111 * 81.06706 * 11 10 9 34 34 H 1.08995 * 111.00659 * 204.91393 * 11 10 9 35 35 H 0.96703 * 113.99739 * 298.54626 * 13 12 11 36 36 H 0.97006 * 120.00178 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.88182 * 298.40481 * 22 9 7 38 38 H 1.09000 * 109.87974 * 59.56195 * 22 9 7 39 39 H 1.09006 * 109.47098 * 270.00641 * 24 23 2 40 40 H 1.09004 * 109.47131 * 30.00388 * 24 23 2 41 41 H 1.08997 * 109.47685 * 150.00472 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2853 1.0935 0.0000 4 6 3.5790 0.7582 -0.0033 5 6 4.7391 1.7202 -0.0074 6 6 3.6710 -0.6029 0.0037 7 6 4.9025 -1.4125 0.0077 8 8 5.4104 -1.7416 1.0625 9 7 5.4657 -1.7884 -1.1576 10 6 4.9582 -1.4603 -2.5023 11 6 5.5263 -2.5699 -3.4221 12 6 6.9340 -2.7926 -2.8087 13 8 7.8601 -1.8231 -3.3032 14 6 7.4244 -4.1889 -3.0926 15 1 7.6332 -4.8644 -2.2761 16 6 7.6067 -4.6043 -4.3947 17 7 7.3521 -3.7820 -5.3888 18 14 8.2140 -6.3354 -4.7465 19 1 8.4246 -7.0561 -3.4652 20 1 7.2045 -7.0581 -5.5614 21 1 9.4962 -6.2681 -5.4926 22 6 6.6915 -2.5878 -1.2984 23 6 2.2850 -1.0932 0.0057 24 6 1.8309 -2.5301 0.0127 25 1 -0.3633 0.0054 1.0276 26 1 -0.3634 0.8872 -0.5186 27 1 -0.3633 -0.8926 -0.5091 28 1 5.0194 1.9469 -1.0361 29 1 4.4502 2.6398 0.5015 30 1 5.5865 1.2696 0.5092 31 1 3.8685 -1.4806 -2.5120 32 1 5.3215 -0.4818 -2.8167 33 1 4.9244 -3.4765 -3.3583 34 1 5.5997 -2.2234 -4.4529 35 1 7.9903 -1.8563 -4.2609 36 1 7.4799 -4.0742 -6.3049 37 1 7.5334 -2.0568 -0.8544 38 1 6.5617 -3.5542 -0.8113 39 1 1.7209 -2.8714 1.0421 40 1 0.8730 -2.6109 -0.5012 41 1 2.5701 -3.1474 -0.4977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592837088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:34 Heat of formation + Delta-G solvation = -80.505608 kcal Electronic energy + Delta-G solvation = -24347.223543 eV Core-core repulsion = 20807.432024 eV Total energy + Delta-G solvation = -3539.791519 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.50876 -39.27677 -37.19122 -34.34280 -34.17490 -32.95369 -32.23352 -29.84239 -29.66027 -28.46357 -27.92176 -25.49415 -24.39684 -23.06496 -21.62144 -19.79713 -19.42396 -18.37072 -17.28230 -16.77409 -16.39559 -15.70328 -15.27298 -14.95299 -14.78164 -14.22937 -14.02495 -13.62058 -13.53149 -13.29286 -13.01365 -12.95863 -12.73409 -12.72490 -12.42382 -12.19941 -12.12517 -12.01968 -11.61692 -11.37596 -11.37088 -11.16200 -10.91481 -10.62768 -10.46817 -10.12986 -9.68826 -9.37130 -9.22059 -8.69542 -8.25685 -8.20234 -8.02660 -6.30491 -4.37833 1.68075 2.29936 2.79051 2.93541 3.17892 3.27081 3.31948 3.62201 4.25871 4.48359 4.82497 4.88447 4.97487 5.07537 5.15160 5.26919 5.31661 5.43998 5.49461 5.58853 5.65398 5.70423 5.75733 5.80206 5.90124 5.94223 5.98224 6.04510 6.18962 6.27210 6.42958 6.51925 6.68907 6.90299 6.96287 7.16962 7.28203 7.33668 7.71612 8.00395 8.08086 8.60284 8.65865 9.28427 9.37417 10.77152 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023521 B = 0.004276 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.119039 B = 6546.915813 C = 6855.254986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.022 4.022 3 O -0.174 6.174 4 C 0.035 3.965 5 C -0.077 4.077 6 C -0.208 4.208 7 C 0.597 3.403 8 O -0.548 6.548 9 N -0.597 5.597 10 C 0.099 3.901 11 C -0.133 4.133 12 C 0.248 3.752 13 O -0.585 6.585 14 C -0.534 4.534 15 H 0.065 0.935 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.902 3.098 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.122 3.878 23 C -0.144 4.144 24 C -0.084 4.084 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.382 0.618 36 H 0.267 0.733 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.269 8.084 5.150 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.070 4.070 3 O -0.072 6.072 4 C -0.017 4.017 5 C -0.133 4.133 6 C -0.212 4.212 7 C 0.385 3.615 8 O -0.427 6.427 9 N -0.329 5.329 10 C -0.024 4.024 11 C -0.172 4.172 12 C 0.207 3.793 13 O -0.394 6.394 14 C -0.572 4.572 15 H 0.083 0.917 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.207 1.207 22 C 0.001 3.999 23 C -0.146 4.146 24 C -0.141 4.141 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.232 0.768 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.099 8.371 6.210 15.969 hybrid contribution 0.304 -1.207 -0.979 1.583 sum -11.794 7.164 5.232 14.758 Atomic orbital electron populations 1.20269 0.84921 1.03934 1.03326 1.21893 0.93626 0.83338 1.08185 1.83614 1.15977 1.35113 1.72494 1.22411 0.83079 0.93398 1.02779 1.20410 0.91765 0.96990 1.04128 1.21023 0.93972 0.93125 1.13083 1.16901 0.82489 0.79378 0.82758 1.90762 1.64288 1.56925 1.30729 1.48593 1.27051 1.51723 1.05547 1.22467 0.97794 0.99825 0.82270 1.23295 0.99032 0.95961 0.98908 1.19473 0.85634 0.87685 0.86469 1.86134 1.65654 1.58959 1.28669 1.21548 1.45561 0.97357 0.92754 0.91695 1.24975 0.93997 0.98061 0.95928 1.69703 1.48519 1.35889 0.99419 0.86368 0.78500 0.83683 0.78477 1.19566 1.20833 1.20749 1.22103 0.84794 0.94364 0.98672 1.21047 0.90185 0.96413 1.06949 1.20205 1.01254 0.90312 1.02324 0.90267 0.90637 0.89353 0.89386 0.90112 0.89064 0.92224 0.92152 0.91482 0.89337 0.76783 0.92273 0.91956 0.90898 0.91158 0.91311 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.21 36.01 0.37 -0.20 16 2 C -0.02 -0.29 7.28 -35.74 -0.26 -0.55 16 3 O -0.17 -2.49 10.52 7.67 0.08 -2.41 16 4 C 0.03 0.53 7.37 -34.96 -0.26 0.27 16 5 C -0.08 -0.93 10.24 36.01 0.37 -0.57 16 6 C -0.21 -3.61 4.97 -103.27 -0.51 -4.13 16 7 C 0.60 12.22 7.28 -12.54 -0.09 12.13 16 8 O -0.55 -12.85 17.43 5.27 0.09 -12.76 16 9 N -0.60 -12.30 3.33 -171.79 -0.57 -12.87 16 10 C 0.10 1.88 6.67 -2.52 -0.02 1.87 16 11 C -0.13 -2.89 5.47 -24.58 -0.13 -3.02 16 12 C 0.25 5.94 0.84 -89.94 -0.08 5.86 16 13 O -0.59 -14.48 13.06 -35.23 -0.46 -14.94 16 14 C -0.53 -13.88 8.23 -34.44 -0.28 -14.17 16 15 H 0.06 1.70 7.59 -52.48 -0.40 1.31 16 16 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 17 N -0.90 -22.73 10.67 55.43 0.59 -22.14 16 18 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 C 0.12 2.78 6.23 -3.06 -0.02 2.76 16 23 C -0.14 -2.17 6.37 -102.50 -0.65 -2.82 16 24 C -0.08 -1.09 10.15 36.01 0.37 -0.72 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.61 7.14 -51.93 -0.37 0.24 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.21 7.93 -51.93 -0.41 0.80 16 31 H 0.06 1.04 7.69 -51.93 -0.40 0.64 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.49 8.04 -51.92 -0.42 1.08 16 34 H 0.09 1.98 7.53 -51.93 -0.39 1.59 16 35 H 0.38 9.43 7.46 45.56 0.34 9.77 16 36 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 37 H 0.06 1.46 8.07 -51.93 -0.42 1.04 16 38 H 0.07 1.69 7.67 -51.93 -0.40 1.29 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.69 7.15 -51.93 -0.37 0.31 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 344.03 15.07 5.18 5.18 Total: -1.00 -29.93 344.03 -6.73 -36.67 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.33 Total: 9.71 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.30 Total: -1.52 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.02 Total: -35.01 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.29 Total: -30.11 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.93 -6.73 -36.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.839 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds