Wall clock time and date at job start Tue Mar 31 2020 06:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34215 * 125.44054 * 2 1 4 4 C 1.33644 * 110.91110 * 180.15214 * 3 2 1 5 5 C 1.50706 * 125.80477 * 179.85581 * 4 3 2 6 6 C 1.36423 * 108.39673 * 359.58984 * 4 3 2 7 7 C 1.47381 * 127.19046 * 180.22000 * 6 4 3 8 8 O 1.21613 * 119.99486 * 90.03001 * 7 6 4 9 9 N 1.34772 * 120.00271 * 270.02193 * 7 6 4 10 10 C 1.47425 * 125.64411 * 0.03240 * 9 7 6 11 11 C 1.54917 * 104.82858 * 204.08516 * 10 9 7 12 12 C 1.55154 * 101.58367 * 322.99248 * 11 10 9 13 13 O 1.42900 * 110.71983 * 277.13731 * 12 11 10 14 14 C 1.50694 * 110.72134 * 154.04034 * 12 11 10 15 15 H 1.08007 * 120.00248 * 241.45301 * 14 12 11 16 16 C 1.37883 * 120.00154 * 61.45472 * 14 12 11 17 17 N 1.31508 * 119.99593 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 120.00179 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47049 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47461 * 119.99774 * 18 16 14 21 21 H 1.48504 * 109.47216 * 239.99722 * 18 16 14 22 22 C 1.47018 * 125.65134 * 179.71658 * 9 7 6 23 23 C 1.34178 * 125.43754 * 179.69989 * 2 1 3 24 24 C 1.50699 * 127.02416 * 0.02562 * 23 2 1 25 25 H 1.08997 * 109.46838 * 270.30324 * 1 2 3 26 26 H 1.09003 * 109.47223 * 30.30525 * 1 2 3 27 27 H 1.08993 * 109.47197 * 150.30350 * 1 2 3 28 28 H 1.08999 * 109.47015 * 269.69247 * 5 4 3 29 29 H 1.09000 * 109.46646 * 29.68400 * 5 4 3 30 30 H 1.09000 * 109.47248 * 149.69117 * 5 4 3 31 31 H 1.08999 * 110.37242 * 322.92187 * 10 9 7 32 32 H 1.09006 * 110.36928 * 85.14327 * 10 9 7 33 33 H 1.09008 * 111.00111 * 81.06706 * 11 10 9 34 34 H 1.08995 * 111.00659 * 204.91393 * 11 10 9 35 35 H 0.96703 * 113.99739 * 298.54626 * 13 12 11 36 36 H 0.97006 * 120.00178 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.88182 * 298.40481 * 22 9 7 38 38 H 1.09000 * 109.87974 * 59.56195 * 22 9 7 39 39 H 1.09006 * 109.47098 * 270.00641 * 24 23 2 40 40 H 1.09004 * 109.47131 * 30.00388 * 24 23 2 41 41 H 1.08997 * 109.47685 * 150.00472 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2853 1.0935 0.0000 4 6 3.5790 0.7582 -0.0033 5 6 4.7391 1.7202 -0.0074 6 6 3.6710 -0.6029 0.0037 7 6 4.9025 -1.4125 0.0077 8 8 5.4104 -1.7416 1.0625 9 7 5.4657 -1.7884 -1.1576 10 6 4.9582 -1.4603 -2.5023 11 6 5.5263 -2.5699 -3.4221 12 6 6.9340 -2.7926 -2.8087 13 8 7.8601 -1.8231 -3.3032 14 6 7.4244 -4.1889 -3.0926 15 1 7.6332 -4.8644 -2.2761 16 6 7.6067 -4.6043 -4.3947 17 7 7.3521 -3.7820 -5.3888 18 14 8.2140 -6.3354 -4.7465 19 1 8.4246 -7.0561 -3.4652 20 1 7.2045 -7.0581 -5.5614 21 1 9.4962 -6.2681 -5.4926 22 6 6.6915 -2.5878 -1.2984 23 6 2.2850 -1.0932 0.0057 24 6 1.8309 -2.5301 0.0127 25 1 -0.3633 0.0054 1.0276 26 1 -0.3634 0.8872 -0.5186 27 1 -0.3633 -0.8926 -0.5091 28 1 5.0194 1.9469 -1.0361 29 1 4.4502 2.6398 0.5015 30 1 5.5865 1.2696 0.5092 31 1 3.8685 -1.4806 -2.5120 32 1 5.3215 -0.4818 -2.8167 33 1 4.9244 -3.4765 -3.3583 34 1 5.5997 -2.2234 -4.4529 35 1 7.9903 -1.8563 -4.2609 36 1 7.4799 -4.0742 -6.3049 37 1 7.5334 -2.0568 -0.8544 38 1 6.5617 -3.5542 -0.8113 39 1 1.7209 -2.8714 1.0421 40 1 0.8730 -2.6109 -0.5012 41 1 2.5701 -3.1474 -0.4977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592837088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:33 Heat of formation + Delta-G solvation = -99.965384 kcal Electronic energy + Delta-G solvation = -24348.067382 eV Core-core repulsion = 20807.432024 eV Total energy + Delta-G solvation = -3540.635358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.62191 -40.96748 -38.98312 -36.14228 -35.25439 -34.22187 -34.07215 -31.47702 -30.60580 -30.16630 -29.11061 -27.25796 -25.53332 -24.55343 -23.13101 -21.54495 -20.72058 -19.80465 -19.16778 -18.20576 -17.53190 -17.09018 -16.97161 -16.85253 -16.20098 -16.00871 -15.38613 -14.87000 -14.78554 -14.44721 -14.39609 -13.95755 -13.92781 -13.84073 -13.72242 -13.49489 -13.38309 -13.29205 -13.26172 -13.15239 -12.94966 -12.69291 -12.48449 -12.26895 -12.24582 -12.03212 -11.39275 -11.20113 -10.65131 -10.46481 -10.16018 -9.75122 -9.27241 -8.25933 -6.40339 0.56397 1.15590 1.35003 1.40086 1.44647 1.54506 1.72837 2.06044 2.39457 2.99488 3.42036 3.52093 3.81889 3.87230 3.93476 4.04324 4.23528 4.30003 4.32470 4.38482 4.50546 4.52594 4.59001 4.63366 4.65400 4.78228 4.83259 4.86491 4.88185 4.97593 5.05695 5.10930 5.14178 5.21614 5.42267 5.47967 5.53043 5.74165 6.05366 6.07555 6.44402 6.63063 6.97178 7.29627 7.38764 8.80493 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023521 B = 0.004276 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.119039 B = 6546.915813 C = 6855.254986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.008 4.008 3 O -0.173 6.173 4 C 0.040 3.960 5 C -0.078 4.078 6 C -0.246 4.246 7 C 0.602 3.398 8 O -0.587 6.587 9 N -0.598 5.598 10 C 0.112 3.888 11 C -0.121 4.121 12 C 0.239 3.761 13 O -0.591 6.591 14 C -0.564 4.564 15 H 0.051 0.949 16 C 0.040 3.960 17 N -0.904 5.904 18 Si 0.959 3.041 19 H -0.277 1.277 20 H -0.275 1.275 21 H -0.277 1.277 22 C 0.128 3.872 23 C -0.170 4.170 24 C -0.081 4.081 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.380 0.620 36 H 0.272 0.728 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.456 8.987 4.578 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.057 4.057 3 O -0.070 6.070 4 C -0.011 4.011 5 C -0.134 4.134 6 C -0.250 4.250 7 C 0.391 3.609 8 O -0.469 6.469 9 N -0.329 5.329 10 C -0.010 4.010 11 C -0.160 4.160 12 C 0.199 3.801 13 O -0.400 6.400 14 C -0.602 4.602 15 H 0.069 0.931 16 C -0.161 4.161 17 N -0.543 5.543 18 Si 0.784 3.216 19 H -0.201 1.201 20 H -0.200 1.200 21 H -0.203 1.203 22 C 0.005 3.995 23 C -0.172 4.172 24 C -0.138 4.138 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.230 0.770 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.306 9.291 5.623 17.961 hybrid contribution 0.974 -1.458 -0.784 1.921 sum -13.331 7.833 4.839 16.202 Atomic orbital electron populations 1.20540 0.81259 1.05653 1.04970 1.22723 0.95376 0.82184 1.05392 1.83660 1.15574 1.35602 1.72144 1.22785 0.84099 0.93027 1.01234 1.20523 0.90287 0.97451 1.05119 1.20938 0.93608 0.94040 1.16445 1.17364 0.82956 0.78752 0.81808 1.90723 1.65643 1.58535 1.32005 1.48614 1.26321 1.51490 1.06479 1.22405 0.98862 0.99095 0.80629 1.23073 0.97555 0.96443 0.98945 1.19549 0.86555 0.86885 0.87071 1.86120 1.66180 1.59109 1.28547 1.21725 1.47127 0.98332 0.92998 0.93079 1.25553 0.93857 1.01134 0.95596 1.69749 1.48031 1.36885 0.99655 0.85500 0.78197 0.79908 0.77949 1.20147 1.19999 1.20298 1.21865 0.85620 0.94010 0.97981 1.21310 0.89264 0.97919 1.08728 1.20226 1.02022 0.88873 1.02642 0.88496 0.88998 0.87534 0.88099 0.87220 0.90675 0.90092 0.91090 0.92481 0.89898 0.76969 0.91817 0.93268 0.92179 0.90899 0.88013 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.21 71.24 0.73 -0.12 16 2 C -0.01 -0.19 7.28 24.76 0.18 -0.01 16 3 O -0.17 -4.48 10.52 4.54 0.05 -4.43 16 4 C 0.04 1.17 7.37 25.26 0.19 1.35 16 5 C -0.08 -1.78 10.24 71.24 0.73 -1.05 16 6 C -0.25 -8.44 4.97 -18.99 -0.09 -8.53 16 7 C 0.60 25.12 7.28 86.65 0.63 25.75 16 8 O -0.59 -28.60 17.43 -4.07 -0.07 -28.67 16 9 N -0.60 -25.07 3.33 -815.68 -2.71 -27.78 16 10 C 0.11 4.20 6.67 86.86 0.58 4.78 16 11 C -0.12 -5.28 5.47 31.99 0.18 -5.11 16 12 C 0.24 11.72 0.84 -10.35 -0.01 11.71 16 13 O -0.59 -29.68 13.06 -148.98 -1.95 -31.62 16 14 C -0.56 -29.95 8.23 25.60 0.21 -29.74 16 15 H 0.05 2.78 7.59 -2.91 -0.02 2.76 16 16 C 0.04 2.05 5.28 84.66 0.45 2.50 16 17 N -0.90 -45.57 10.67 21.45 0.23 -45.35 16 18 Si 0.96 41.16 29.54 68.60 2.03 43.19 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 21 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 22 C 0.13 6.05 6.23 86.73 0.54 6.59 16 23 C -0.17 -4.86 6.37 -18.49 -0.12 -4.98 16 24 C -0.08 -1.99 10.15 71.24 0.72 -1.27 16 25 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.11 0.98 7.14 -2.39 -0.02 0.96 16 28 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 1.98 7.93 -2.39 -0.02 1.96 16 31 H 0.08 2.71 7.69 -2.39 -0.02 2.70 16 32 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 33 H 0.06 2.56 8.04 -2.38 -0.02 2.55 16 34 H 0.08 3.69 7.53 -2.39 -0.02 3.67 16 35 H 0.38 19.00 7.46 -74.06 -0.55 18.44 16 36 H 0.27 12.99 8.31 -92.70 -0.77 12.22 16 37 H 0.05 2.41 8.07 -2.39 -0.02 2.39 16 38 H 0.06 2.95 7.67 -2.39 -0.02 2.93 16 39 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.10 1.74 7.15 -2.38 -0.02 1.72 16 41 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -65.36 344.03 2.98 -62.38 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.49 Total: 30.42 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 4.91 Total: 1.87 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -2.48 Total: -73.13 kcal Atomic # 8 Polarization: -62.76 SS G_CDS: -1.97 Total: -64.73 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -65.36 2.98 -62.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.582 kcal (2) G-P(sol) polarization free energy of solvation -65.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds