Wall clock time and date at job start Tue Mar 31 2020 06:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 C 1.50702 * 109.47224 * 119.99809 * 2 1 3 5 5 C 1.40370 * 126.64536 * 300.13429 * 4 2 1 6 6 C 1.35134 * 107.11523 * 180.29868 * 5 4 2 7 7 O 1.33926 * 108.76320 * 359.74064 * 6 5 4 8 8 C 1.34913 * 109.38846 * 0.02562 * 7 6 5 9 9 C 1.46654 * 125.98728 * 179.97438 * 8 7 6 10 10 O 1.21701 * 119.99848 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00256 * 0.02562 * 9 8 7 12 12 C 1.47422 * 125.64926 * 0.02801 * 11 9 8 13 13 C 1.54909 * 104.83564 * 155.82503 * 12 11 9 14 14 C 1.55152 * 101.58032 * 37.00513 * 13 12 11 15 15 O 1.42903 * 110.72100 * 82.86680 * 14 13 12 16 16 C 1.50703 * 110.71825 * 205.95483 * 14 13 12 17 17 H 1.07993 * 120.00249 * 357.56786 * 16 14 13 18 18 C 1.37877 * 119.99923 * 177.55974 * 16 14 13 19 19 N 1.31521 * 120.00053 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00236 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47095 * 90.00027 * 20 18 16 22 22 H 1.48504 * 109.47221 * 210.00342 * 20 18 16 23 23 H 1.48506 * 109.46864 * 330.00097 * 20 18 16 24 24 C 1.47027 * 125.65206 * 179.97438 * 11 9 8 25 25 H 1.09000 * 109.47368 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46986 * 300.00487 * 1 2 3 27 27 H 1.09001 * 109.47250 * 60.00104 * 1 2 3 28 28 H 1.08990 * 109.47358 * 239.99679 * 2 1 3 29 29 H 1.09005 * 109.46870 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47111 * 299.99083 * 3 2 1 31 31 H 1.08992 * 109.47604 * 60.00176 * 3 2 1 32 32 H 1.07998 * 126.44130 * 0.03923 * 5 4 2 33 33 H 1.07996 * 125.61443 * 179.77896 * 6 5 4 34 34 H 1.09002 * 110.36847 * 36.97758 * 12 11 9 35 35 H 1.09005 * 110.45737 * 274.70993 * 12 11 9 36 36 H 1.09005 * 111.00113 * 278.93173 * 13 12 11 37 37 H 1.08998 * 111.03822 * 155.09465 * 13 12 11 38 38 H 0.96700 * 114.00311 * 179.97438 * 15 14 13 39 39 H 0.97000 * 119.99959 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.87825 * 61.68763 * 24 11 9 41 41 H 1.09001 * 109.88209 * 300.52818 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7785 -0.3560 2.5648 6 6 2.4224 -1.2530 3.3439 7 8 3.0489 -2.1364 2.5561 8 6 2.8208 -1.8246 1.2635 9 6 3.3346 -2.5515 0.0980 10 8 3.0597 -2.1724 -1.0253 11 7 4.1112 -3.6394 0.2709 12 6 4.5197 -4.2059 1.5691 13 6 4.8276 -5.6949 1.2729 14 6 5.4761 -5.6050 -0.1337 15 8 6.8627 -5.2751 -0.0311 16 6 5.2917 -6.8958 -0.8893 17 1 4.7991 -7.7326 -0.4167 18 6 5.7519 -7.0085 -2.1841 19 7 6.3522 -5.9895 -2.7597 20 14 5.5228 -8.6082 -3.1210 21 1 4.2282 -8.5753 -3.8476 22 1 6.6323 -8.7754 -4.0939 23 1 5.5259 -9.7457 -2.1664 24 6 4.6904 -4.4584 -0.8040 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.1843 0.4793 2.9048 33 1 2.4299 -1.2570 4.4238 34 1 3.7078 -4.1228 2.2917 35 1 5.4111 -3.7011 1.9416 36 1 3.9115 -6.2850 1.2438 37 1 5.5290 -6.1019 2.0012 38 1 7.3150 -5.2071 -0.8831 39 1 6.6763 -6.0689 -3.6705 40 1 5.3638 -3.8522 -1.4100 41 1 3.8955 -4.8684 -1.4270 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592851213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:46 Heat of formation + Delta-G solvation = -77.953243 kcal Electronic energy + Delta-G solvation = -24309.427819 eV Core-core repulsion = 20769.746979 eV Total energy + Delta-G solvation = -3539.680840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.62526 -39.22300 -37.36179 -35.98446 -34.29753 -32.21295 -31.75340 -30.45782 -29.42031 -27.79441 -27.08173 -25.40656 -23.39023 -22.63870 -21.75074 -20.26228 -19.53396 -18.94466 -17.25717 -17.06848 -16.24679 -16.02750 -15.46219 -14.90024 -14.70297 -14.62322 -14.18364 -13.83342 -13.29792 -13.16801 -13.06220 -12.92027 -12.87782 -12.47176 -12.20377 -12.12801 -11.65515 -11.49943 -11.18769 -11.17139 -11.09680 -10.89425 -10.70807 -10.62965 -10.52529 -10.18876 -9.65360 -9.50020 -9.32896 -8.69808 -8.56226 -8.34994 -7.91214 -6.31142 -4.40160 1.27096 2.42350 2.88163 3.20236 3.27836 3.30466 3.56348 3.62138 4.25468 4.66636 4.75968 4.87771 4.97866 5.22811 5.28519 5.37343 5.42532 5.62426 5.64950 5.67220 5.75818 5.82016 5.84525 5.91316 6.01278 6.05909 6.11553 6.26505 6.30958 6.40683 6.48431 6.55582 6.73482 6.82523 6.89709 7.05129 7.23628 7.34653 7.70937 7.96594 8.09389 8.54959 8.64321 9.28367 9.38366 10.76573 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023888 B = 0.004262 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.870417 B = 6568.022753 C = 7179.681774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 C -0.137 4.137 4 C -0.090 4.090 5 C -0.219 4.219 6 C -0.022 4.022 7 O -0.157 6.157 8 C -0.062 4.062 9 C 0.601 3.399 10 O -0.530 6.530 11 N -0.598 5.598 12 C 0.101 3.899 13 C -0.118 4.118 14 C 0.249 3.751 15 O -0.585 6.585 16 C -0.539 4.539 17 H 0.068 0.932 18 C 0.071 3.929 19 N -0.895 5.895 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.103 3.897 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.112 0.888 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.150 0.850 33 H 0.205 0.795 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.385 0.615 39 H 0.271 0.729 40 H 0.069 0.931 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.053 10.271 10.023 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 C -0.194 4.194 4 C -0.092 4.092 5 C -0.238 4.238 6 C -0.091 4.091 7 O -0.052 6.052 8 C -0.114 4.114 9 C 0.389 3.611 10 O -0.410 6.410 11 N -0.329 5.329 12 C -0.021 4.021 13 C -0.156 4.156 14 C 0.208 3.792 15 O -0.394 6.394 16 C -0.577 4.577 17 H 0.086 0.914 18 C -0.133 4.133 19 N -0.534 5.534 20 Si 0.732 3.268 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.197 1.197 24 C -0.018 4.018 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.130 0.870 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.168 0.832 33 H 0.222 0.778 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.236 0.764 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.077 10.298 9.950 16.441 hybrid contribution -0.102 -0.568 -0.940 1.103 sum -8.179 9.730 9.011 15.581 Atomic orbital electron populations 1.21755 0.94506 1.01813 1.01317 1.19989 0.95528 0.95658 0.95859 1.21754 1.01227 0.95097 1.01320 1.20503 0.98032 0.94872 0.95841 1.21593 1.06542 1.03338 0.92340 1.24293 0.97178 0.90692 0.96964 1.84228 1.58432 1.46548 1.16000 1.22123 1.06659 1.00410 0.82247 1.16251 0.79156 0.79809 0.85862 1.90769 1.60347 1.67342 1.22547 1.48723 1.47356 1.26400 1.10440 1.22435 0.99340 0.95356 0.85006 1.22771 1.00637 0.93273 0.98879 1.19486 0.79494 0.90538 0.89683 1.86091 1.23483 1.93145 1.36727 1.21520 1.39372 0.98481 0.98306 0.91424 1.25083 0.93813 0.97098 0.97267 1.69642 1.38598 1.30380 1.14793 0.86386 0.77969 0.83001 0.79483 1.20380 1.20947 1.19658 1.23114 0.97601 0.92386 0.88744 0.92698 0.93048 0.92372 0.87022 0.92702 0.92368 0.93037 0.83230 0.77816 0.91126 0.91537 0.90473 0.90356 0.76400 0.91889 0.91291 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.09 37.16 0.34 -1.26 16 2 C -0.05 -0.73 3.19 -91.77 -0.29 -1.03 16 3 C -0.14 -1.61 9.09 37.16 0.34 -1.27 16 4 C -0.09 -1.33 4.87 -104.43 -0.51 -1.84 16 5 C -0.22 -2.56 10.41 -39.88 -0.42 -2.97 16 6 C -0.02 -0.24 12.08 29.63 0.36 0.12 16 7 O -0.16 -2.34 7.86 5.01 0.04 -2.30 16 8 C -0.06 -1.08 6.93 -36.80 -0.25 -1.33 16 9 C 0.60 12.54 7.82 -12.86 -0.10 12.44 16 10 O -0.53 -12.18 14.73 5.19 0.08 -12.10 16 11 N -0.60 -12.76 3.33 -172.07 -0.57 -13.34 16 12 C 0.10 1.89 6.16 -2.53 -0.02 1.87 16 13 C -0.12 -2.37 6.22 -24.59 -0.15 -2.52 16 14 C 0.25 6.01 0.86 -89.94 -0.08 5.93 16 15 O -0.58 -14.71 13.09 -35.23 -0.46 -15.17 16 16 C -0.54 -13.98 8.12 -34.44 -0.28 -14.26 16 17 H 0.07 1.72 7.77 -52.49 -0.41 1.32 16 18 C 0.07 1.83 5.26 -17.82 -0.09 1.73 16 19 N -0.90 -23.65 10.97 55.43 0.61 -23.04 16 20 Si 0.90 20.30 29.54 -169.99 -5.02 15.27 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 C 0.10 2.49 5.39 -3.07 -0.02 2.47 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.52 8.05 -51.93 -0.42 0.10 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.11 1.92 5.48 -51.93 -0.28 1.63 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.52 8.06 -51.93 -0.42 0.10 16 32 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.21 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.07 1.16 6.22 -51.93 -0.32 0.84 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.38 9.93 7.17 45.56 0.33 10.25 16 39 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.07 1.81 8.01 -51.93 -0.42 1.40 16 41 H 0.07 1.83 7.82 -51.93 -0.41 1.42 16 LS Contribution 336.23 15.07 5.07 5.07 Total: -1.00 -29.01 336.23 -6.72 -35.73 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -5.28 Total: 11.81 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -1.17 Total: -1.93 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.04 Total: -36.37 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.35 Total: -29.57 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.01 -6.72 -35.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592851213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.226 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds