Wall clock time and date at job start Tue Mar 31 2020 06:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 C 1.50702 * 109.47224 * 119.99809 * 2 1 3 5 5 C 1.40370 * 126.64536 * 300.13429 * 4 2 1 6 6 C 1.35134 * 107.11523 * 180.29868 * 5 4 2 7 7 O 1.33926 * 108.76320 * 359.74064 * 6 5 4 8 8 C 1.34913 * 109.38846 * 0.02562 * 7 6 5 9 9 C 1.46654 * 125.98728 * 179.97438 * 8 7 6 10 10 O 1.21701 * 119.99848 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00256 * 0.02562 * 9 8 7 12 12 C 1.47422 * 125.64926 * 0.02801 * 11 9 8 13 13 C 1.54909 * 104.83564 * 155.82503 * 12 11 9 14 14 C 1.55152 * 101.58032 * 37.00513 * 13 12 11 15 15 O 1.42903 * 110.72100 * 82.86680 * 14 13 12 16 16 C 1.50703 * 110.71825 * 205.95483 * 14 13 12 17 17 H 1.07993 * 120.00249 * 357.56786 * 16 14 13 18 18 C 1.37877 * 119.99923 * 177.55974 * 16 14 13 19 19 N 1.31521 * 120.00053 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00236 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47095 * 90.00027 * 20 18 16 22 22 H 1.48504 * 109.47221 * 210.00342 * 20 18 16 23 23 H 1.48506 * 109.46864 * 330.00097 * 20 18 16 24 24 C 1.47027 * 125.65206 * 179.97438 * 11 9 8 25 25 H 1.09000 * 109.47368 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46986 * 300.00487 * 1 2 3 27 27 H 1.09001 * 109.47250 * 60.00104 * 1 2 3 28 28 H 1.08990 * 109.47358 * 239.99679 * 2 1 3 29 29 H 1.09005 * 109.46870 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47111 * 299.99083 * 3 2 1 31 31 H 1.08992 * 109.47604 * 60.00176 * 3 2 1 32 32 H 1.07998 * 126.44130 * 0.03923 * 5 4 2 33 33 H 1.07996 * 125.61443 * 179.77896 * 6 5 4 34 34 H 1.09002 * 110.36847 * 36.97758 * 12 11 9 35 35 H 1.09005 * 110.45737 * 274.70993 * 12 11 9 36 36 H 1.09005 * 111.00113 * 278.93173 * 13 12 11 37 37 H 1.08998 * 111.03822 * 155.09465 * 13 12 11 38 38 H 0.96700 * 114.00311 * 179.97438 * 15 14 13 39 39 H 0.97000 * 119.99959 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.87825 * 61.68763 * 24 11 9 41 41 H 1.09001 * 109.88209 * 300.52818 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7785 -0.3560 2.5648 6 6 2.4224 -1.2530 3.3439 7 8 3.0489 -2.1364 2.5561 8 6 2.8208 -1.8246 1.2635 9 6 3.3346 -2.5515 0.0980 10 8 3.0597 -2.1724 -1.0253 11 7 4.1112 -3.6394 0.2709 12 6 4.5197 -4.2059 1.5691 13 6 4.8276 -5.6949 1.2729 14 6 5.4761 -5.6050 -0.1337 15 8 6.8627 -5.2751 -0.0311 16 6 5.2917 -6.8958 -0.8893 17 1 4.7991 -7.7326 -0.4167 18 6 5.7519 -7.0085 -2.1841 19 7 6.3522 -5.9895 -2.7597 20 14 5.5228 -8.6082 -3.1210 21 1 4.2282 -8.5753 -3.8476 22 1 6.6323 -8.7754 -4.0939 23 1 5.5259 -9.7457 -2.1664 24 6 4.6904 -4.4584 -0.8040 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.1843 0.4793 2.9048 33 1 2.4299 -1.2570 4.4238 34 1 3.7078 -4.1228 2.2917 35 1 5.4111 -3.7011 1.9416 36 1 3.9115 -6.2850 1.2438 37 1 5.5290 -6.1019 2.0012 38 1 7.3150 -5.2071 -0.8831 39 1 6.6763 -6.0689 -3.6705 40 1 5.3638 -3.8522 -1.4100 41 1 3.8955 -4.8684 -1.4270 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592851213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:45 Heat of formation + Delta-G solvation = -97.466433 kcal Electronic energy + Delta-G solvation = -24310.273974 eV Core-core repulsion = 20769.746979 eV Total energy + Delta-G solvation = -3540.526995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.70323 -40.88733 -39.06733 -37.13364 -36.08781 -34.22719 -32.75658 -32.08178 -30.75373 -29.55633 -28.00903 -27.23116 -24.94338 -23.71881 -23.07436 -21.64707 -21.19310 -20.19417 -19.18082 -18.54387 -17.53633 -17.27672 -17.19358 -16.49827 -16.32302 -16.07457 -15.60987 -14.89085 -14.83790 -14.81149 -14.71158 -14.15806 -14.08701 -13.79444 -13.56905 -13.44253 -13.31004 -13.05466 -12.87612 -12.58083 -12.35153 -12.31356 -12.21491 -12.18898 -12.13659 -11.93099 -11.21941 -10.96723 -10.67993 -10.64179 -10.33435 -9.87597 -9.44487 -8.29278 -6.45942 0.06057 1.40660 1.42641 1.45630 1.52691 1.67118 2.08596 2.17628 2.37314 2.97097 3.55582 3.67216 3.75170 3.84898 4.03950 4.16401 4.28258 4.28725 4.34878 4.43673 4.52260 4.61150 4.64559 4.78002 4.79023 4.94263 4.94598 5.00936 5.03561 5.06344 5.14053 5.23161 5.31031 5.36339 5.42543 5.44419 5.54491 5.71115 5.96589 6.01517 6.48367 6.62281 6.95704 7.25280 7.33014 8.77135 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023888 B = 0.004262 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.870417 B = 6568.022753 C = 7179.681774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.061 4.061 3 C -0.130 4.130 4 C -0.077 4.077 5 C -0.226 4.226 6 C 0.011 3.989 7 O -0.168 6.168 8 C -0.113 4.113 9 C 0.595 3.405 10 O -0.569 6.569 11 N -0.609 5.609 12 C 0.111 3.889 13 C -0.111 4.111 14 C 0.235 3.765 15 O -0.588 6.588 16 C -0.559 4.559 17 H 0.069 0.931 18 C 0.026 3.974 19 N -0.917 5.917 20 Si 0.966 3.034 21 H -0.279 1.279 22 H -0.280 1.280 23 H -0.264 1.264 24 C 0.121 3.879 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.186 0.814 33 H 0.259 0.741 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.378 0.622 39 H 0.272 0.728 40 H 0.035 0.965 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.609 11.230 13.057 19.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.080 4.080 3 C -0.188 4.188 4 C -0.080 4.080 5 C -0.244 4.244 6 C -0.059 4.059 7 O -0.064 6.064 8 C -0.164 4.164 9 C 0.386 3.614 10 O -0.452 6.452 11 N -0.339 5.339 12 C -0.011 4.011 13 C -0.149 4.149 14 C 0.194 3.806 15 O -0.396 6.396 16 C -0.597 4.597 17 H 0.088 0.912 18 C -0.175 4.175 19 N -0.557 5.557 20 Si 0.791 3.209 21 H -0.205 1.205 22 H -0.206 1.206 23 H -0.188 1.188 24 C -0.002 4.002 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.203 0.797 33 H 0.275 0.725 34 H 0.117 0.883 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.228 0.772 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.636 11.259 13.016 19.723 hybrid contribution 0.324 -0.748 -1.808 1.983 sum -9.312 10.511 11.208 17.967 Atomic orbital electron populations 1.21713 0.92458 1.01373 1.03182 1.20030 0.97243 0.96573 0.94141 1.21714 1.00122 0.93726 1.03198 1.20886 0.95920 0.93415 0.97764 1.21964 1.07390 1.04788 0.90292 1.25441 0.93569 0.88171 0.98678 1.84170 1.59313 1.47828 1.15121 1.21391 1.10400 1.02270 0.82371 1.16807 0.78284 0.79353 0.86957 1.90736 1.61559 1.68289 1.24599 1.48763 1.47914 1.26800 1.10462 1.22474 1.00455 0.93918 0.84225 1.22767 1.00833 0.94698 0.96582 1.19691 0.78995 0.89721 0.92176 1.86078 1.24143 1.93205 1.36212 1.21841 1.39647 0.99255 0.98997 0.91244 1.25837 0.93535 0.99991 0.98095 1.69751 1.39064 1.31903 1.14937 0.85434 0.77680 0.79580 0.78241 1.20457 1.20586 1.18813 1.22615 0.95978 0.92410 0.89209 0.94275 0.90401 0.91282 0.91190 0.94398 0.91256 0.90386 0.79687 0.72538 0.88255 0.91278 0.89708 0.88802 0.77222 0.91910 0.94700 0.94302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.09 71.98 0.65 -2.17 16 2 C -0.06 -1.70 3.19 -11.54 -0.04 -1.73 16 3 C -0.13 -2.86 9.09 71.98 0.65 -2.21 16 4 C -0.08 -2.17 4.87 -19.74 -0.10 -2.27 16 5 C -0.23 -4.27 10.41 22.07 0.23 -4.04 16 6 C 0.01 0.18 12.08 67.10 0.81 0.99 16 7 O -0.17 -4.58 7.86 -4.99 -0.04 -4.62 16 8 C -0.11 -3.88 6.93 24.07 0.17 -3.71 16 9 C 0.60 26.05 7.82 86.44 0.68 26.72 16 10 O -0.57 -28.24 14.73 -4.35 -0.06 -28.30 16 11 N -0.61 -27.04 3.33 -816.51 -2.72 -29.76 16 12 C 0.11 4.08 6.16 86.86 0.53 4.61 16 13 C -0.11 -4.43 6.22 31.98 0.20 -4.23 16 14 C 0.23 11.68 0.86 -10.36 -0.01 11.67 16 15 O -0.59 -30.48 13.09 -148.98 -1.95 -32.43 16 16 C -0.56 -29.69 8.12 25.60 0.21 -29.49 16 17 H 0.07 3.57 7.77 -2.91 -0.02 3.55 16 18 C 0.03 1.39 5.26 84.65 0.45 1.83 16 19 N -0.92 -50.39 10.97 21.45 0.24 -50.16 16 20 Si 0.97 42.25 29.54 68.60 2.03 44.27 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 24 C 0.12 6.23 5.39 86.72 0.47 6.70 16 25 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.08 1.28 8.05 -2.38 -0.02 1.26 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 2.55 5.48 -2.39 -0.01 2.54 16 29 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.29 8.06 -2.39 -0.02 1.27 16 32 H 0.19 2.16 8.06 -2.91 -0.02 2.13 16 33 H 0.26 1.43 8.06 -2.91 -0.02 1.40 16 34 H 0.10 3.08 6.22 -2.39 -0.01 3.07 16 35 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 36 H 0.08 3.22 8.04 -2.38 -0.02 3.20 16 37 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 38 H 0.38 20.43 7.17 -74.06 -0.53 19.90 16 39 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 40 H 0.03 1.98 8.01 -2.39 -0.02 1.96 16 41 H 0.04 2.18 7.82 -2.39 -0.02 2.17 16 Total: -1.00 -68.11 336.23 2.91 -65.20 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: 0.51 Total: 33.13 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 4.91 Total: 2.67 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -2.48 Total: -79.91 kcal Atomic # 8 Polarization: -63.30 SS G_CDS: -2.05 Total: -65.36 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -68.11 2.91 -65.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592851213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.266 kcal (2) G-P(sol) polarization free energy of solvation -68.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds