Wall clock time and date at job start Tue Mar 31 2020 06:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47337 * 2 1 4 4 C 1.50702 * 109.47410 * 120.00358 * 2 1 3 5 5 O 1.33657 * 125.79932 * 299.99739 * 4 2 1 6 6 C 1.34212 * 110.90755 * 180.02562 * 5 4 2 7 7 C 1.34179 * 109.12493 * 359.70523 * 6 5 4 8 8 C 1.36415 * 125.80343 * 119.99606 * 4 2 1 9 9 C 1.47377 * 127.19156 * 359.97438 * 8 4 2 10 10 O 1.21619 * 119.99864 * 33.85747 * 9 8 4 11 11 N 1.34771 * 120.00089 * 213.85201 * 9 8 4 12 12 C 1.47427 * 125.65009 * 355.76711 * 11 9 8 13 13 C 1.54905 * 104.83370 * 155.83340 * 12 11 9 14 14 C 1.55160 * 101.58245 * 37.00944 * 13 12 11 15 15 O 1.42899 * 110.72170 * 82.86294 * 14 13 12 16 16 C 1.50703 * 110.72151 * 205.95620 * 14 13 12 17 17 H 1.08006 * 119.99617 * 357.56063 * 16 14 13 18 18 C 1.37868 * 120.00107 * 177.55672 * 16 14 13 19 19 N 1.31517 * 120.00031 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 120.00087 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46856 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46783 * 120.00154 * 20 18 16 23 23 H 1.48499 * 109.47105 * 240.00207 * 20 18 16 24 24 C 1.47028 * 125.64980 * 175.72338 * 11 9 8 25 25 H 1.09006 * 109.46884 * 299.99447 * 1 2 3 26 26 H 1.08998 * 109.47279 * 59.99499 * 1 2 3 27 27 H 1.09005 * 109.47225 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46432 * 239.99962 * 2 1 3 29 29 H 1.09007 * 109.47203 * 300.00639 * 3 2 1 30 30 H 1.08996 * 109.46989 * 59.99994 * 3 2 1 31 31 H 1.09004 * 109.47380 * 180.02562 * 3 2 1 32 32 H 1.07999 * 125.43834 * 179.97438 * 6 5 4 33 33 H 1.07996 * 127.02730 * 180.27091 * 7 6 5 34 34 H 1.08995 * 110.36658 * 36.99164 * 12 11 9 35 35 H 1.09007 * 110.36132 * 274.67200 * 12 11 9 36 36 H 1.08996 * 111.00694 * 278.93271 * 13 12 11 37 37 H 1.08996 * 111.03750 * 155.09616 * 13 12 11 38 38 H 0.96701 * 114.00505 * 180.02562 * 15 14 13 39 39 H 0.97003 * 120.00181 * 179.97438 * 19 18 16 40 40 H 1.08995 * 109.88206 * 61.67802 * 24 11 9 41 41 H 1.08998 * 109.87792 * 300.51342 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.7821 -0.3564 2.4947 6 6 2.3775 -1.1975 3.3545 7 6 3.0363 -2.1398 2.6627 8 6 2.8199 -1.8243 1.2431 9 6 3.3401 -2.5609 0.0775 10 8 3.6342 -1.9614 -0.9390 11 7 3.4899 -3.8989 0.1379 12 6 3.2577 -4.7367 1.3286 13 6 2.9508 -6.1474 0.7672 14 6 3.9143 -6.2159 -0.4471 15 8 5.2262 -6.5999 -0.0306 16 6 3.3890 -7.1668 -1.4916 17 1 2.4768 -7.7164 -1.3116 18 6 4.0728 -7.3350 -2.6769 19 7 5.1837 -6.6661 -2.8959 20 14 3.4213 -8.5132 -3.9719 21 1 2.1646 -9.1374 -3.4858 22 1 3.1499 -7.7678 -5.2274 23 1 4.4312 -9.5703 -4.2323 24 6 3.9112 -4.7651 -0.9730 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 3.1301 1.4424 -0.0005 32 1 2.3301 -1.1295 4.4313 33 1 3.6103 -2.9608 3.0662 34 1 2.4066 -4.3610 1.8966 35 1 4.1503 -4.7630 1.9537 36 1 1.9118 -6.2227 0.4463 37 1 3.1885 -6.9198 1.4985 38 1 5.8671 -6.6571 -0.7524 39 1 5.6650 -6.7847 -3.7297 40 1 4.9130 -4.4873 -1.3003 41 1 3.2092 -4.6727 -1.8017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592852510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:48 Heat of formation + Delta-G solvation = -79.465659 kcal Electronic energy + Delta-G solvation = -24286.789716 eV Core-core repulsion = 20747.043293 eV Total energy + Delta-G solvation = -3539.746423 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.50796 -39.19387 -37.17854 -35.49718 -34.30586 -32.68951 -32.20158 -30.03912 -29.02158 -27.85793 -27.24206 -25.47243 -23.48010 -22.54049 -21.76319 -20.41174 -19.49775 -18.49704 -17.26484 -17.05555 -16.15541 -15.81937 -15.46877 -14.97973 -14.89132 -14.69823 -14.26949 -13.90441 -13.20755 -13.19294 -13.06988 -12.97306 -12.83729 -12.51600 -12.28408 -11.95003 -11.64206 -11.48847 -11.30264 -11.26453 -11.07636 -10.94387 -10.77929 -10.65013 -10.49079 -10.19538 -9.67827 -9.40777 -9.31445 -8.68968 -8.52813 -8.32265 -7.84478 -6.29987 -4.38992 1.60321 2.20931 2.86753 3.19208 3.28229 3.31627 3.52150 3.75918 4.26095 4.45462 4.82815 4.90733 4.99309 5.03891 5.05791 5.31998 5.43073 5.50653 5.53164 5.63412 5.71494 5.75360 5.81726 5.84543 5.89952 6.03734 6.08207 6.15423 6.17446 6.26024 6.39309 6.50811 6.75743 6.85192 6.99009 7.13560 7.26664 7.38330 7.72278 7.99033 8.23240 8.64197 8.75919 9.29631 9.39553 10.77680 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022312 B = 0.004343 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.630140 B = 6445.747411 C = 7047.977660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.025 4.025 3 C -0.143 4.143 4 C 0.067 3.933 5 O -0.175 6.175 6 C -0.048 4.048 7 C -0.185 4.185 8 C -0.223 4.223 9 C 0.591 3.409 10 O -0.551 6.551 11 N -0.601 5.601 12 C 0.102 3.898 13 C -0.119 4.119 14 C 0.248 3.752 15 O -0.586 6.586 16 C -0.538 4.538 17 H 0.067 0.933 18 C 0.070 3.930 19 N -0.895 5.895 20 Si 0.903 3.097 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.104 3.896 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.118 0.882 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.205 0.795 33 H 0.157 0.843 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.385 0.615 39 H 0.270 0.730 40 H 0.066 0.934 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.922 10.771 10.068 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.044 4.044 3 C -0.200 4.200 4 C 0.015 3.985 5 O -0.072 6.072 6 C -0.114 4.114 7 C -0.204 4.204 8 C -0.228 4.228 9 C 0.380 3.620 10 O -0.431 6.431 11 N -0.333 5.333 12 C -0.021 4.021 13 C -0.157 4.157 14 C 0.208 3.792 15 O -0.395 6.395 16 C -0.576 4.576 17 H 0.086 0.914 18 C -0.133 4.133 19 N -0.534 5.534 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.017 4.017 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.136 0.864 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.222 0.778 33 H 0.175 0.825 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.236 0.764 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.080 11.397 10.054 16.766 hybrid contribution 0.253 -0.879 -1.106 1.435 sum -6.827 10.517 8.948 15.404 Atomic orbital electron populations 1.21873 0.93629 1.02548 1.02396 1.20065 0.96185 0.96418 0.91694 1.21804 1.01879 0.94161 1.02166 1.22613 0.97541 0.94458 0.83915 1.83693 1.59984 1.48394 1.15101 1.23793 1.00079 0.92123 0.95357 1.23012 1.04174 1.01791 0.91431 1.21294 1.07381 0.99850 0.94225 1.16883 0.78376 0.80759 0.85998 1.90739 1.52201 1.67600 1.32589 1.48589 1.65221 1.05194 1.14301 1.22428 0.99764 0.91684 0.88223 1.22773 0.99897 0.94254 0.98783 1.19490 0.81263 0.88645 0.89840 1.86080 1.21826 1.91575 1.40049 1.21562 1.10194 1.25192 1.00663 0.91438 1.25080 0.94652 0.95371 0.98182 1.69655 1.16248 1.41107 1.26374 0.86351 0.79068 0.80528 0.80988 1.19572 1.20743 1.20706 1.23021 0.99977 0.91042 0.87695 0.92244 0.91466 0.92185 0.86390 0.91558 0.92402 0.91976 0.77808 0.82506 0.91625 0.91836 0.90547 0.90515 0.76413 0.91974 0.91560 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.18 37.16 0.34 -1.27 16 2 C -0.03 -0.34 3.22 -91.77 -0.30 -0.64 16 3 C -0.14 -1.61 9.18 37.16 0.34 -1.27 16 4 C 0.07 1.01 5.88 -34.96 -0.21 0.80 16 5 O -0.18 -2.31 10.52 7.65 0.08 -2.23 16 6 C -0.05 -0.54 12.03 29.30 0.35 -0.18 16 7 C -0.18 -2.52 9.14 -37.45 -0.34 -2.86 16 8 C -0.22 -3.80 5.79 -103.28 -0.60 -4.40 16 9 C 0.59 12.39 7.61 -12.54 -0.10 12.29 16 10 O -0.55 -13.05 15.70 5.26 0.08 -12.96 16 11 N -0.60 -12.77 3.33 -171.80 -0.57 -13.35 16 12 C 0.10 1.84 5.41 -2.53 -0.01 1.83 16 13 C -0.12 -2.38 6.22 -24.58 -0.15 -2.53 16 14 C 0.25 6.00 0.86 -89.94 -0.08 5.93 16 15 O -0.59 -14.76 13.09 -35.23 -0.46 -15.22 16 16 C -0.54 -14.01 8.12 -34.44 -0.28 -14.29 16 17 H 0.07 1.73 7.77 -52.48 -0.41 1.32 16 18 C 0.07 1.83 5.26 -17.82 -0.09 1.73 16 19 N -0.89 -23.81 10.97 55.43 0.61 -23.20 16 20 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C 0.10 2.55 5.40 -3.06 -0.02 2.53 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.12 1.89 6.25 -51.93 -0.32 1.56 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.21 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.16 1.93 6.76 -52.49 -0.35 1.57 16 34 H 0.07 1.02 6.58 -51.93 -0.34 0.68 16 35 H 0.06 1.10 7.78 -51.92 -0.40 0.70 16 36 H 0.08 1.47 8.04 -51.93 -0.42 1.06 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.38 9.99 7.17 45.56 0.33 10.31 16 39 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.07 1.78 8.01 -51.93 -0.42 1.36 16 41 H 0.07 1.75 7.82 -51.93 -0.41 1.35 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -30.03 337.29 -6.60 -36.63 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -5.26 Total: 12.25 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -1.14 Total: -2.34 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.04 Total: -36.55 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.30 Total: -30.41 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.03 -6.60 -36.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.837 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds