Wall clock time and date at job start Tue Mar 31 2020 06:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47337 * 2 1 4 4 C 1.50702 * 109.47410 * 120.00358 * 2 1 3 5 5 O 1.33657 * 125.79932 * 299.99739 * 4 2 1 6 6 C 1.34212 * 110.90755 * 180.02562 * 5 4 2 7 7 C 1.34179 * 109.12493 * 359.70523 * 6 5 4 8 8 C 1.36415 * 125.80343 * 119.99606 * 4 2 1 9 9 C 1.47377 * 127.19156 * 359.97438 * 8 4 2 10 10 O 1.21619 * 119.99864 * 33.85747 * 9 8 4 11 11 N 1.34771 * 120.00089 * 213.85201 * 9 8 4 12 12 C 1.47427 * 125.65009 * 355.76711 * 11 9 8 13 13 C 1.54905 * 104.83370 * 155.83340 * 12 11 9 14 14 C 1.55160 * 101.58245 * 37.00944 * 13 12 11 15 15 O 1.42899 * 110.72170 * 82.86294 * 14 13 12 16 16 C 1.50703 * 110.72151 * 205.95620 * 14 13 12 17 17 H 1.08006 * 119.99617 * 357.56063 * 16 14 13 18 18 C 1.37868 * 120.00107 * 177.55672 * 16 14 13 19 19 N 1.31517 * 120.00031 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 120.00087 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46856 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46783 * 120.00154 * 20 18 16 23 23 H 1.48499 * 109.47105 * 240.00207 * 20 18 16 24 24 C 1.47028 * 125.64980 * 175.72338 * 11 9 8 25 25 H 1.09006 * 109.46884 * 299.99447 * 1 2 3 26 26 H 1.08998 * 109.47279 * 59.99499 * 1 2 3 27 27 H 1.09005 * 109.47225 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46432 * 239.99962 * 2 1 3 29 29 H 1.09007 * 109.47203 * 300.00639 * 3 2 1 30 30 H 1.08996 * 109.46989 * 59.99994 * 3 2 1 31 31 H 1.09004 * 109.47380 * 180.02562 * 3 2 1 32 32 H 1.07999 * 125.43834 * 179.97438 * 6 5 4 33 33 H 1.07996 * 127.02730 * 180.27091 * 7 6 5 34 34 H 1.08995 * 110.36658 * 36.99164 * 12 11 9 35 35 H 1.09007 * 110.36132 * 274.67200 * 12 11 9 36 36 H 1.08996 * 111.00694 * 278.93271 * 13 12 11 37 37 H 1.08996 * 111.03750 * 155.09616 * 13 12 11 38 38 H 0.96701 * 114.00505 * 180.02562 * 15 14 13 39 39 H 0.97003 * 120.00181 * 179.97438 * 19 18 16 40 40 H 1.08995 * 109.88206 * 61.67802 * 24 11 9 41 41 H 1.08998 * 109.87792 * 300.51342 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.7821 -0.3564 2.4947 6 6 2.3775 -1.1975 3.3545 7 6 3.0363 -2.1398 2.6627 8 6 2.8199 -1.8243 1.2431 9 6 3.3401 -2.5609 0.0775 10 8 3.6342 -1.9614 -0.9390 11 7 3.4899 -3.8989 0.1379 12 6 3.2577 -4.7367 1.3286 13 6 2.9508 -6.1474 0.7672 14 6 3.9143 -6.2159 -0.4471 15 8 5.2262 -6.5999 -0.0306 16 6 3.3890 -7.1668 -1.4916 17 1 2.4768 -7.7164 -1.3116 18 6 4.0728 -7.3350 -2.6769 19 7 5.1837 -6.6661 -2.8959 20 14 3.4213 -8.5132 -3.9719 21 1 2.1646 -9.1374 -3.4858 22 1 3.1499 -7.7678 -5.2274 23 1 4.4312 -9.5703 -4.2323 24 6 3.9112 -4.7651 -0.9730 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 3.1301 1.4424 -0.0005 32 1 2.3301 -1.1295 4.4313 33 1 3.6103 -2.9608 3.0662 34 1 2.4066 -4.3610 1.8966 35 1 4.1503 -4.7630 1.9537 36 1 1.9118 -6.2227 0.4463 37 1 3.1885 -6.9198 1.4985 38 1 5.8671 -6.6571 -0.7524 39 1 5.6650 -6.7847 -3.7297 40 1 4.9130 -4.4873 -1.3003 41 1 3.2092 -4.6727 -1.8017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592852510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:47 Heat of formation + Delta-G solvation = -99.919273 kcal Electronic energy + Delta-G solvation = -24287.676651 eV Core-core repulsion = 20747.043293 eV Total energy + Delta-G solvation = -3540.633358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.58373 -40.88447 -38.94562 -36.55472 -36.09150 -34.22480 -33.87650 -31.73585 -30.10691 -29.65096 -28.11935 -27.33795 -25.06306 -23.56692 -23.16389 -21.74155 -21.23526 -19.73873 -19.17907 -18.48815 -17.45860 -17.23196 -17.08970 -16.51231 -16.40347 -16.09406 -15.72995 -15.16337 -14.83794 -14.78572 -14.67592 -14.20829 -14.07403 -13.73561 -13.52422 -13.47884 -13.31182 -13.09023 -12.89213 -12.53144 -12.35447 -12.27060 -12.24789 -12.23574 -12.13564 -11.94712 -11.23195 -11.12668 -10.76273 -10.66098 -10.31679 -9.73385 -9.45855 -8.29212 -6.45907 0.39497 1.16264 1.39017 1.42171 1.53207 1.78260 2.01362 2.21304 2.37217 2.97262 3.47316 3.57406 3.76840 3.86617 4.00345 4.08513 4.09490 4.18916 4.30632 4.35763 4.51917 4.61394 4.66406 4.69220 4.72208 4.85790 4.87983 4.95069 4.96795 5.08377 5.10001 5.22275 5.24435 5.26591 5.33878 5.41665 5.48655 5.71976 6.00656 6.07151 6.57290 6.64607 7.09903 7.25625 7.33156 8.77199 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022312 B = 0.004343 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.630140 B = 6445.747411 C = 7047.977660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.032 4.032 3 C -0.137 4.137 4 C 0.073 3.927 5 O -0.169 6.169 6 C -0.018 4.018 7 C -0.204 4.204 8 C -0.260 4.260 9 C 0.585 3.415 10 O -0.593 6.593 11 N -0.608 5.608 12 C 0.110 3.890 13 C -0.113 4.113 14 C 0.234 3.766 15 O -0.588 6.588 16 C -0.558 4.558 17 H 0.069 0.931 18 C 0.025 3.975 19 N -0.918 5.918 20 Si 0.965 3.035 21 H -0.264 1.264 22 H -0.284 1.284 23 H -0.276 1.276 24 C 0.121 3.879 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.258 0.742 33 H 0.170 0.830 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.377 0.623 39 H 0.271 0.729 40 H 0.029 0.971 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.723 11.409 12.620 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.051 4.051 3 C -0.194 4.194 4 C 0.019 3.981 5 O -0.065 6.065 6 C -0.083 4.083 7 C -0.223 4.223 8 C -0.264 4.264 9 C 0.377 3.623 10 O -0.476 6.476 11 N -0.339 5.339 12 C -0.012 4.012 13 C -0.151 4.151 14 C 0.194 3.806 15 O -0.396 6.396 16 C -0.596 4.596 17 H 0.087 0.913 18 C -0.175 4.175 19 N -0.557 5.557 20 Si 0.790 3.210 21 H -0.188 1.188 22 H -0.210 1.210 23 H -0.202 1.202 24 C -0.002 4.002 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.274 0.726 33 H 0.187 0.813 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.227 0.773 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.897 12.030 12.652 19.595 hybrid contribution 0.825 -1.015 -1.876 2.287 sum -8.072 11.015 10.776 17.396 Atomic orbital electron populations 1.21839 0.91487 1.02338 1.04064 1.20097 0.97941 0.97110 0.89940 1.21777 1.00742 0.92961 1.03921 1.22769 0.96635 0.93582 0.85072 1.83740 1.59836 1.48545 1.14375 1.24741 0.96933 0.89725 0.96877 1.23159 1.05895 1.03628 0.89578 1.21124 1.09699 1.01162 0.94441 1.17557 0.77437 0.80549 0.86805 1.90699 1.53854 1.68390 1.34672 1.48642 1.65351 1.05557 1.14358 1.22553 1.01598 0.89942 0.87113 1.22774 0.98959 0.96039 0.97313 1.19695 0.81483 0.87662 0.91765 1.86067 1.22228 1.91615 1.39712 1.21885 1.10435 1.25704 1.01601 0.91302 1.25838 0.94856 0.96778 1.00053 1.69763 1.17136 1.42075 1.26772 0.85398 0.78762 0.78555 0.78288 1.18763 1.20967 1.20166 1.22545 0.96969 0.92458 0.88200 0.90525 0.89835 0.93314 0.89931 0.89852 0.90581 0.93718 0.72611 0.81259 0.88243 0.90780 0.89925 0.88833 0.77291 0.91974 0.95204 0.94732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.18 71.98 0.66 -2.19 16 2 C -0.03 -0.86 3.22 -11.54 -0.04 -0.90 16 3 C -0.14 -2.93 9.18 71.98 0.66 -2.27 16 4 C 0.07 2.09 5.88 25.26 0.15 2.24 16 5 O -0.17 -3.86 10.52 4.45 0.05 -3.81 16 6 C -0.02 -0.32 12.03 66.89 0.80 0.49 16 7 C -0.20 -4.97 9.14 23.65 0.22 -4.75 16 8 C -0.26 -8.71 5.79 -18.99 -0.11 -8.82 16 9 C 0.59 25.41 7.61 86.65 0.66 26.07 16 10 O -0.59 -29.94 15.70 -4.09 -0.06 -30.00 16 11 N -0.61 -26.49 3.33 -815.72 -2.71 -29.20 16 12 C 0.11 3.81 5.41 86.85 0.47 4.28 16 13 C -0.11 -4.41 6.22 31.99 0.20 -4.21 16 14 C 0.23 11.57 0.86 -10.35 -0.01 11.56 16 15 O -0.59 -30.26 13.09 -148.98 -1.95 -32.21 16 16 C -0.56 -29.58 8.12 25.60 0.21 -29.37 16 17 H 0.07 3.54 7.77 -2.91 -0.02 3.52 16 18 C 0.03 1.35 5.26 84.65 0.45 1.79 16 19 N -0.92 -50.63 10.97 21.44 0.24 -50.40 16 20 Si 0.96 42.25 29.54 68.60 2.03 44.28 16 21 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.12 6.26 5.40 86.73 0.47 6.73 16 25 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.08 2.80 6.25 -2.39 -0.01 2.78 16 29 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.26 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.17 3.61 6.76 -2.91 -0.02 3.59 16 34 H 0.10 2.82 6.58 -2.39 -0.02 2.80 16 35 H 0.07 2.44 7.78 -2.38 -0.02 2.42 16 36 H 0.08 3.09 8.04 -2.39 -0.02 3.07 16 37 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.38 20.39 7.17 -74.06 -0.53 19.86 16 39 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 40 H 0.03 1.71 8.01 -2.39 -0.02 1.69 16 41 H 0.03 1.95 7.82 -2.39 -0.02 1.93 16 Total: -1.00 -69.11 337.29 2.88 -66.24 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: 0.51 Total: 34.44 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 4.78 Total: 0.67 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -2.48 Total: -79.60 kcal Atomic # 8 Polarization: -64.05 SS G_CDS: -1.97 Total: -66.02 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -69.11 2.88 -66.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.683 kcal (2) G-P(sol) polarization free energy of solvation -69.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds