Wall clock time and date at job start Tue Mar 31 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46927 * 2 1 4 4 C 1.50704 * 109.47244 * 179.97438 * 3 2 1 5 5 O 1.33653 * 125.80036 * 270.14501 * 4 3 2 6 6 C 1.34214 * 110.90451 * 180.26721 * 5 4 3 7 7 C 1.34175 * 109.12732 * 359.75867 * 6 5 4 8 8 C 1.36414 * 125.80006 * 90.00115 * 4 3 2 9 9 C 1.47377 * 127.19221 * 0.02562 * 8 4 3 10 10 O 1.21617 * 119.99905 * 32.97792 * 9 8 4 11 11 N 1.34773 * 120.00085 * 212.96862 * 9 8 4 12 12 C 1.47420 * 125.64830 * 355.83743 * 11 9 8 13 13 C 1.54907 * 104.83388 * 155.83447 * 12 11 9 14 14 C 1.55154 * 101.58286 * 37.00520 * 13 12 11 15 15 O 1.42902 * 110.71856 * 82.86686 * 14 13 12 16 16 C 1.50706 * 110.72284 * 205.95900 * 14 13 12 17 17 H 1.08003 * 119.99625 * 357.56017 * 16 14 13 18 18 C 1.37870 * 119.99941 * 177.55901 * 16 14 13 19 19 N 1.31515 * 120.00620 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99692 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47534 * 60.00079 * 20 18 16 22 22 H 1.48500 * 109.47249 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47204 * 299.99975 * 20 18 16 24 24 C 1.47025 * 125.64656 * 175.78885 * 11 9 8 25 25 H 1.09004 * 109.47091 * 59.99663 * 1 2 3 26 26 H 1.09005 * 109.46919 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47096 * 299.99729 * 1 2 3 28 28 H 1.08998 * 109.47096 * 240.00271 * 2 1 3 29 29 H 1.08994 * 109.46934 * 119.99775 * 2 1 3 30 30 H 1.09007 * 109.47191 * 60.00153 * 3 2 1 31 31 H 1.09004 * 109.47510 * 300.00080 * 3 2 1 32 32 H 1.08003 * 125.43646 * 179.76116 * 6 5 4 33 33 H 1.08000 * 127.02539 * 179.97438 * 7 6 5 34 34 H 1.08993 * 110.37214 * 36.99125 * 12 11 9 35 35 H 1.09000 * 110.36572 * 274.66769 * 12 11 9 36 36 H 1.09001 * 111.00611 * 278.93286 * 13 12 11 37 37 H 1.09000 * 111.03991 * 155.09879 * 13 12 11 38 38 H 0.96703 * 113.99795 * 180.02562 * 15 14 13 39 39 H 0.96991 * 120.00453 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.88511 * 61.68543 * 24 11 9 41 41 H 1.08997 * 109.88780 * 300.51284 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.3284 1.4401 1.0850 6 6 5.6255 1.4468 0.7405 7 6 5.7251 1.4487 -0.5975 8 6 4.3454 1.4425 -1.1054 9 6 3.9149 1.4428 -2.5149 10 8 2.8925 2.0165 -2.8383 11 7 4.6544 0.8076 -3.4455 12 6 5.9526 0.1501 -3.2095 13 6 6.0722 -0.9072 -4.3353 14 6 5.4255 -0.1619 -5.5326 15 8 6.3733 0.7037 -6.1608 16 6 4.8598 -1.1418 -6.5280 17 1 4.9757 -2.2033 -6.3664 18 6 4.1943 -0.6831 -7.6450 19 7 4.0527 0.6095 -7.8416 20 14 3.4925 -1.8978 -8.8784 21 1 2.4997 -2.7715 -8.2030 22 1 2.8304 -1.1563 -9.9816 23 1 4.5899 -2.7313 -9.4317 24 6 4.2995 0.6547 -4.8641 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8901 31 1 1.6766 1.9564 -0.8900 32 1 6.4566 1.4501 1.4303 33 1 6.6332 1.4541 -1.1821 34 1 5.9610 -0.3333 -2.2326 35 1 6.7636 0.8748 -3.2820 36 1 5.5109 -1.8079 -4.0866 37 1 7.1162 -1.1442 -4.5403 38 1 6.0187 1.1935 -6.9154 39 1 3.5849 0.9322 -8.6276 40 1 4.2228 1.6348 -5.3348 41 1 3.3524 0.1228 -4.9541 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592852639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:51 Heat of formation + Delta-G solvation = -81.910148 kcal Electronic energy + Delta-G solvation = -24217.734765 eV Core-core repulsion = 20677.882341 eV Total energy + Delta-G solvation = -3539.852424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.48332 -39.19082 -37.16631 -35.20489 -34.30953 -32.68255 -32.20034 -30.29311 -30.00471 -27.90093 -26.56590 -25.20345 -23.39733 -21.86903 -21.74821 -20.79533 -19.51674 -18.60185 -17.26254 -17.08843 -16.19339 -15.82810 -15.47759 -15.20978 -14.78988 -14.71412 -14.36978 -13.88822 -13.33296 -13.18680 -13.06832 -12.97792 -12.77811 -12.57732 -12.02408 -11.94369 -11.63668 -11.48151 -11.39946 -11.33250 -11.04325 -10.79281 -10.72042 -10.65313 -10.53558 -10.19646 -9.67592 -9.40323 -9.30994 -8.68041 -8.51127 -8.32777 -7.84555 -6.29496 -4.38711 1.58640 2.20486 2.86811 3.21786 3.27618 3.29389 3.53497 3.76127 4.26223 4.52258 4.89886 4.92859 4.97004 5.00386 5.07447 5.25855 5.39930 5.43443 5.61305 5.67292 5.72115 5.75510 5.79947 5.84276 5.94193 6.03673 6.12795 6.16037 6.21221 6.26673 6.39359 6.50847 6.75679 6.85338 6.99054 7.12854 7.26863 7.38311 7.72336 7.99185 8.23646 8.63843 8.76542 9.29716 9.39620 10.78116 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018436 B = 0.004643 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.370210 B = 6029.760552 C = 6936.325559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.050 4.050 4 C 0.061 3.939 5 O -0.178 6.178 6 C -0.047 4.047 7 C -0.185 4.185 8 C -0.223 4.223 9 C 0.592 3.408 10 O -0.551 6.551 11 N -0.601 5.601 12 C 0.102 3.898 13 C -0.119 4.119 14 C 0.249 3.751 15 O -0.586 6.586 16 C -0.539 4.539 17 H 0.066 0.934 18 C 0.071 3.929 19 N -0.895 5.895 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.104 3.896 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.205 0.795 33 H 0.157 0.843 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.385 0.615 39 H 0.271 0.729 40 H 0.066 0.934 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.413 -0.204 15.725 15.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.087 4.087 4 C 0.009 3.991 5 O -0.075 6.075 6 C -0.113 4.113 7 C -0.204 4.204 8 C -0.227 4.227 9 C 0.381 3.619 10 O -0.431 6.431 11 N -0.333 5.333 12 C -0.021 4.021 13 C -0.157 4.157 14 C 0.208 3.792 15 O -0.395 6.395 16 C -0.577 4.577 17 H 0.084 0.916 18 C -0.132 4.132 19 N -0.534 5.534 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.200 1.200 24 C -0.017 4.017 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.132 0.868 32 H 0.222 0.778 33 H 0.175 0.825 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.236 0.764 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.044 0.029 16.201 16.201 hybrid contribution -0.385 -0.314 -1.297 1.389 sum -0.340 -0.285 14.904 14.911 Atomic orbital electron populations 1.21744 0.94949 1.01955 1.02105 1.21496 0.96384 0.95142 1.02609 1.20481 0.83809 0.99076 1.05292 1.22659 0.93603 0.99845 0.83026 1.83718 1.17026 1.71712 1.35017 1.23789 0.83577 1.07664 0.96294 1.23024 0.96957 1.06127 0.94307 1.21283 0.93288 1.13913 0.94218 1.16863 0.83078 0.78813 0.83168 1.90730 1.25701 1.45225 1.81479 1.48587 1.20953 1.52949 1.10824 1.22425 0.85431 0.95294 0.98960 1.22773 1.01632 0.96894 0.94413 1.19477 0.84121 0.86605 0.88973 1.86082 1.41652 1.61448 1.50353 1.21481 1.36364 0.93394 1.06492 0.91556 1.25073 0.94722 0.95580 0.97860 1.69631 1.42350 1.12518 1.28886 0.86457 0.79238 0.80857 0.80346 1.20016 1.21043 1.19971 1.23017 1.00727 1.01313 0.76647 0.92100 0.92421 0.92710 0.91334 0.91879 0.90023 0.86751 0.77799 0.82493 0.91633 0.91846 0.90558 0.90523 0.76421 0.91857 0.91579 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 3 C -0.05 -0.65 5.53 -27.88 -0.15 -0.81 16 4 C 0.06 0.91 6.62 -34.96 -0.23 0.68 16 5 O -0.18 -2.36 10.52 7.65 0.08 -2.28 16 6 C -0.05 -0.53 12.03 29.30 0.35 -0.18 16 7 C -0.18 -2.52 9.14 -37.45 -0.34 -2.86 16 8 C -0.22 -3.78 5.80 -103.28 -0.60 -4.37 16 9 C 0.59 12.33 7.68 -12.54 -0.10 12.24 16 10 O -0.55 -12.95 15.71 5.26 0.08 -12.87 16 11 N -0.60 -12.73 3.33 -171.81 -0.57 -13.30 16 12 C 0.10 1.84 5.40 -2.53 -0.01 1.82 16 13 C -0.12 -2.38 6.22 -24.59 -0.15 -2.53 16 14 C 0.25 6.01 0.86 -89.93 -0.08 5.93 16 15 O -0.59 -14.75 13.09 -35.23 -0.46 -15.21 16 16 C -0.54 -14.02 8.12 -34.44 -0.28 -14.30 16 17 H 0.07 1.69 7.77 -52.48 -0.41 1.28 16 18 C 0.07 1.84 5.26 -17.82 -0.09 1.75 16 19 N -0.89 -23.79 10.97 55.43 0.61 -23.18 16 20 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C 0.10 2.55 5.40 -3.06 -0.02 2.53 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.11 1.75 6.51 -51.93 -0.34 1.41 16 32 H 0.21 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.16 1.92 6.74 -52.49 -0.35 1.57 16 34 H 0.07 1.02 6.57 -51.93 -0.34 0.67 16 35 H 0.06 1.10 7.77 -51.93 -0.40 0.70 16 36 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.38 9.97 7.18 45.56 0.33 10.30 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.07 1.77 8.01 -51.93 -0.42 1.35 16 41 H 0.07 1.75 7.82 -51.93 -0.41 1.35 16 LS Contribution 338.13 15.07 5.10 5.10 Total: -1.00 -29.89 338.13 -6.95 -36.85 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -5.27 Total: 12.46 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.49 Total: -2.88 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.04 Total: -36.48 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.30 Total: -30.36 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.89 -6.95 -36.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.065 kcal (2) G-P(sol) polarization free energy of solvation -29.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds