Wall clock time and date at job start Tue Mar 31 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46927 * 2 1 4 4 C 1.50704 * 109.47244 * 179.97438 * 3 2 1 5 5 O 1.33653 * 125.80036 * 270.14501 * 4 3 2 6 6 C 1.34214 * 110.90451 * 180.26721 * 5 4 3 7 7 C 1.34175 * 109.12732 * 359.75867 * 6 5 4 8 8 C 1.36414 * 125.80006 * 90.00115 * 4 3 2 9 9 C 1.47377 * 127.19221 * 0.02562 * 8 4 3 10 10 O 1.21617 * 119.99905 * 32.97792 * 9 8 4 11 11 N 1.34773 * 120.00085 * 212.96862 * 9 8 4 12 12 C 1.47420 * 125.64830 * 355.83743 * 11 9 8 13 13 C 1.54907 * 104.83388 * 155.83447 * 12 11 9 14 14 C 1.55154 * 101.58286 * 37.00520 * 13 12 11 15 15 O 1.42902 * 110.71856 * 82.86686 * 14 13 12 16 16 C 1.50706 * 110.72284 * 205.95900 * 14 13 12 17 17 H 1.08003 * 119.99625 * 357.56017 * 16 14 13 18 18 C 1.37870 * 119.99941 * 177.55901 * 16 14 13 19 19 N 1.31515 * 120.00620 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99692 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47534 * 60.00079 * 20 18 16 22 22 H 1.48500 * 109.47249 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47204 * 299.99975 * 20 18 16 24 24 C 1.47025 * 125.64656 * 175.78885 * 11 9 8 25 25 H 1.09004 * 109.47091 * 59.99663 * 1 2 3 26 26 H 1.09005 * 109.46919 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47096 * 299.99729 * 1 2 3 28 28 H 1.08998 * 109.47096 * 240.00271 * 2 1 3 29 29 H 1.08994 * 109.46934 * 119.99775 * 2 1 3 30 30 H 1.09007 * 109.47191 * 60.00153 * 3 2 1 31 31 H 1.09004 * 109.47510 * 300.00080 * 3 2 1 32 32 H 1.08003 * 125.43646 * 179.76116 * 6 5 4 33 33 H 1.08000 * 127.02539 * 179.97438 * 7 6 5 34 34 H 1.08993 * 110.37214 * 36.99125 * 12 11 9 35 35 H 1.09000 * 110.36572 * 274.66769 * 12 11 9 36 36 H 1.09001 * 111.00611 * 278.93286 * 13 12 11 37 37 H 1.09000 * 111.03991 * 155.09879 * 13 12 11 38 38 H 0.96703 * 113.99795 * 180.02562 * 15 14 13 39 39 H 0.96991 * 120.00453 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.88511 * 61.68543 * 24 11 9 41 41 H 1.08997 * 109.88780 * 300.51284 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.3284 1.4401 1.0850 6 6 5.6255 1.4468 0.7405 7 6 5.7251 1.4487 -0.5975 8 6 4.3454 1.4425 -1.1054 9 6 3.9149 1.4428 -2.5149 10 8 2.8925 2.0165 -2.8383 11 7 4.6544 0.8076 -3.4455 12 6 5.9526 0.1501 -3.2095 13 6 6.0722 -0.9072 -4.3353 14 6 5.4255 -0.1619 -5.5326 15 8 6.3733 0.7037 -6.1608 16 6 4.8598 -1.1418 -6.5280 17 1 4.9757 -2.2033 -6.3664 18 6 4.1943 -0.6831 -7.6450 19 7 4.0527 0.6095 -7.8416 20 14 3.4925 -1.8978 -8.8784 21 1 2.4997 -2.7715 -8.2030 22 1 2.8304 -1.1563 -9.9816 23 1 4.5899 -2.7313 -9.4317 24 6 4.2995 0.6547 -4.8641 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8901 31 1 1.6766 1.9564 -0.8900 32 1 6.4566 1.4501 1.4303 33 1 6.6332 1.4541 -1.1821 34 1 5.9610 -0.3333 -2.2326 35 1 6.7636 0.8748 -3.2820 36 1 5.5109 -1.8079 -4.0866 37 1 7.1162 -1.1442 -4.5403 38 1 6.0187 1.1935 -6.9154 39 1 3.5849 0.9322 -8.6276 40 1 4.2228 1.6348 -5.3348 41 1 3.3524 0.1228 -4.9541 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592852639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:51 Heat of formation + Delta-G solvation = -102.044618 kcal Electronic energy + Delta-G solvation = -24218.607861 eV Core-core repulsion = 20677.882341 eV Total energy + Delta-G solvation = -3540.725520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.55664 -40.87584 -38.93322 -36.31012 -36.03794 -34.22103 -33.86250 -31.73137 -31.26883 -29.68878 -27.86302 -26.84943 -24.92519 -23.18989 -22.78604 -22.04768 -21.32028 -19.86623 -19.17193 -18.50963 -17.47111 -17.30533 -17.02091 -16.54652 -16.49032 -16.02655 -15.91245 -15.15414 -14.85609 -14.77413 -14.69319 -14.31939 -14.04184 -13.74998 -13.59320 -13.47862 -13.32558 -12.92143 -12.83789 -12.51391 -12.42394 -12.34357 -12.31902 -12.24506 -12.13247 -11.71203 -11.21920 -11.10783 -10.75816 -10.64971 -10.31956 -9.71820 -9.45515 -8.28507 -6.45349 0.37962 1.16338 1.41884 1.42306 1.50686 1.78853 2.03223 2.21942 2.37590 2.97742 3.54489 3.58705 3.77169 3.91684 3.99147 4.04993 4.10035 4.20193 4.30382 4.33671 4.45841 4.58295 4.66301 4.70440 4.71034 4.81039 4.87413 4.96786 4.97251 5.08618 5.18723 5.19235 5.22558 5.34098 5.34728 5.40117 5.48644 5.72130 6.01033 6.06894 6.57877 6.64947 7.11267 7.25967 7.33490 8.77498 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018436 B = 0.004643 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.370210 B = 6029.760552 C = 6936.325559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.051 4.051 4 C 0.066 3.934 5 O -0.173 6.173 6 C -0.017 4.017 7 C -0.204 4.204 8 C -0.258 4.258 9 C 0.586 3.414 10 O -0.592 6.592 11 N -0.608 5.608 12 C 0.109 3.891 13 C -0.113 4.113 14 C 0.235 3.765 15 O -0.588 6.588 16 C -0.560 4.560 17 H 0.069 0.931 18 C 0.026 3.974 19 N -0.918 5.918 20 Si 0.964 3.036 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.266 1.266 24 C 0.122 3.878 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.258 0.742 33 H 0.170 0.830 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.377 0.623 39 H 0.271 0.729 40 H 0.029 0.971 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 -1.310 18.477 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.088 4.088 4 C 0.012 3.988 5 O -0.069 6.069 6 C -0.082 4.082 7 C -0.223 4.223 8 C -0.262 4.262 9 C 0.378 3.622 10 O -0.476 6.476 11 N -0.339 5.339 12 C -0.012 4.012 13 C -0.151 4.151 14 C 0.194 3.806 15 O -0.396 6.396 16 C -0.598 4.598 17 H 0.087 0.913 18 C -0.175 4.175 19 N -0.557 5.557 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.191 1.191 24 C -0.001 4.001 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.274 0.726 33 H 0.187 0.813 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.227 0.773 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.284 -1.092 18.983 19.058 hybrid contribution -0.759 0.075 -2.090 2.225 sum 0.525 -1.018 16.894 16.932 Atomic orbital electron populations 1.21737 0.93662 1.02695 1.02406 1.21456 0.97512 0.94218 1.01934 1.20500 0.83265 0.99772 1.05254 1.22806 0.94236 0.98701 0.83011 1.83769 1.17908 1.71199 1.33979 1.24734 0.83533 1.03702 0.96229 1.23174 0.95646 1.07981 0.95515 1.21110 0.95952 1.17080 0.92057 1.17533 0.82288 0.77631 0.84767 1.90692 1.27503 1.46833 1.82522 1.48640 1.22296 1.53552 1.09449 1.22549 0.83969 0.94876 0.99826 1.22774 1.02259 0.97156 0.92911 1.19684 0.84411 0.86440 0.90021 1.86069 1.41898 1.61581 1.50090 1.21822 1.36796 0.93885 1.07280 0.91329 1.25832 0.94979 0.97078 0.99593 1.69745 1.42748 1.13963 1.29233 0.85507 0.78637 0.78817 0.78104 1.19782 1.20915 1.19113 1.22535 0.99742 0.98814 0.79017 0.93707 0.91475 0.90496 0.94362 0.90021 0.87093 0.89664 0.72621 0.81252 0.88261 0.90785 0.89951 0.88858 0.77293 0.91957 0.95210 0.94774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.91 71.98 0.71 -2.21 16 2 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 3 C -0.05 -1.31 5.53 29.85 0.17 -1.15 16 4 C 0.07 1.86 6.62 25.26 0.17 2.03 16 5 O -0.17 -3.93 10.52 4.47 0.05 -3.88 16 6 C -0.02 -0.30 12.03 66.89 0.80 0.50 16 7 C -0.20 -4.95 9.14 23.65 0.22 -4.73 16 8 C -0.26 -8.54 5.80 -18.99 -0.11 -8.65 16 9 C 0.59 25.26 7.68 86.65 0.67 25.93 16 10 O -0.59 -29.64 15.71 -4.08 -0.06 -29.70 16 11 N -0.61 -26.39 3.33 -815.73 -2.71 -29.11 16 12 C 0.11 3.80 5.40 86.86 0.47 4.27 16 13 C -0.11 -4.41 6.22 31.98 0.20 -4.21 16 14 C 0.23 11.58 0.86 -10.35 -0.01 11.58 16 15 O -0.59 -30.24 13.09 -148.98 -1.95 -32.19 16 16 C -0.56 -29.63 8.12 25.60 0.21 -29.42 16 17 H 0.07 3.51 7.77 -2.91 -0.02 3.49 16 18 C 0.03 1.37 5.26 84.65 0.45 1.82 16 19 N -0.92 -50.58 10.97 21.44 0.24 -50.35 16 20 Si 0.96 42.20 29.54 68.60 2.03 44.23 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 C 0.12 6.28 5.40 86.73 0.47 6.75 16 25 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 31 H 0.08 2.73 6.51 -2.38 -0.02 2.71 16 32 H 0.26 1.67 8.06 -2.91 -0.02 1.64 16 33 H 0.17 3.59 6.74 -2.91 -0.02 3.57 16 34 H 0.10 2.81 6.57 -2.39 -0.02 2.79 16 35 H 0.07 2.43 7.77 -2.39 -0.02 2.41 16 36 H 0.08 3.08 8.04 -2.39 -0.02 3.06 16 37 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.38 20.37 7.18 -74.06 -0.53 19.83 16 39 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 40 H 0.03 1.70 8.01 -2.39 -0.02 1.68 16 41 H 0.03 1.92 7.82 -2.39 -0.02 1.90 16 Total: -1.00 -68.72 338.13 2.68 -66.04 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.51 Total: 34.94 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 4.58 Total: 0.02 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -2.48 Total: -79.45 kcal Atomic # 8 Polarization: -63.81 SS G_CDS: -1.97 Total: -65.78 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -68.72 2.68 -66.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.002 kcal (2) G-P(sol) polarization free energy of solvation -68.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds