Wall clock time and date at job start Tue Mar 31 2020 07:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37097 * 120.00413 * 2 1 4 4 H 1.07997 * 120.00367 * 142.01247 * 3 2 1 5 5 C 1.38951 * 119.99654 * 322.02317 * 3 2 1 6 6 N 1.31413 * 120.00245 * 159.80303 * 5 3 2 7 7 Si 1.86802 * 120.00076 * 339.79903 * 5 3 2 8 8 H 1.48498 * 109.46799 * 95.12778 * 7 5 3 9 9 H 1.48499 * 109.47151 * 215.12820 * 7 5 3 10 10 H 1.48504 * 109.47141 * 335.13135 * 7 5 3 11 11 C 1.34776 * 119.99782 * 180.02562 * 2 1 3 12 12 O 1.21298 * 119.99984 * 184.70864 * 11 2 1 13 13 C 1.50691 * 120.00499 * 4.71049 * 11 2 1 14 14 H 1.09004 * 109.47192 * 29.66146 * 13 11 2 15 15 O 1.42900 * 109.47940 * 149.66123 * 13 11 2 16 16 C 1.35895 * 117.00329 * 219.41232 * 15 13 11 17 17 C 1.38737 * 120.05576 * 174.40552 * 16 15 13 18 18 C 1.38145 * 119.94219 * 179.97438 * 17 16 15 19 19 C 1.38258 * 120.05674 * 359.97438 * 18 17 16 20 20 C 1.38267 * 120.11574 * 0.27764 * 19 18 17 21 21 C 1.38145 * 120.05084 * 359.44641 * 20 19 18 22 22 C 1.53006 * 109.47257 * 269.66080 * 13 11 2 23 23 C 1.52998 * 109.46760 * 62.52289 * 22 13 11 24 24 C 1.53000 * 109.47006 * 182.52213 * 22 13 11 25 25 O 1.42892 * 109.46858 * 302.52408 * 22 13 11 26 26 H 1.09006 * 109.47056 * 268.42452 * 1 2 3 27 27 H 1.08993 * 109.47275 * 28.42495 * 1 2 3 28 28 H 1.08996 * 109.47336 * 148.42945 * 1 2 3 29 29 H 0.96998 * 120.00509 * 179.97438 * 6 5 3 30 30 H 1.07997 * 120.02437 * 359.95670 * 17 16 15 31 31 H 1.08004 * 119.96612 * 180.02562 * 18 17 16 32 32 H 1.08008 * 119.94740 * 180.02562 * 19 18 17 33 33 H 1.08003 * 119.97651 * 179.70377 * 20 19 18 34 34 H 1.08006 * 120.02711 * 180.27570 * 21 20 19 35 35 H 1.09003 * 109.47386 * 57.47299 * 23 22 13 36 36 H 1.09001 * 109.46799 * 177.47383 * 23 22 13 37 37 H 1.08997 * 109.47404 * 297.47166 * 23 22 13 38 38 H 1.08997 * 109.47277 * 60.00350 * 24 22 13 39 39 H 1.09006 * 109.46971 * 180.02562 * 24 22 13 40 40 H 1.09005 * 109.47380 * 299.99736 * 24 22 13 41 41 H 0.96705 * 113.99964 * 180.02562 * 25 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.0589 1.2863 0.5756 5 6 1.6765 2.2632 -0.7405 6 7 2.0699 3.4835 -0.4524 7 14 0.4798 1.9751 -2.1457 8 1 -0.9105 2.1582 -1.6572 9 1 0.7534 2.9457 -3.2357 10 1 0.6452 0.5922 -2.6611 11 6 2.1388 -1.1672 -0.0005 12 8 3.3487 -1.1691 0.0857 13 6 1.3892 -2.4700 -0.1083 14 1 0.4725 -2.3158 -0.6776 15 8 2.2059 -3.4361 -0.7730 16 6 1.5873 -4.2654 -1.6542 17 6 2.3350 -5.1480 -2.4200 18 6 1.7037 -5.9904 -3.3146 19 6 0.3279 -5.9547 -3.4467 20 6 -0.4191 -5.0723 -2.6884 21 6 0.2068 -4.2319 -1.7882 22 6 1.0403 -2.9751 1.2932 23 6 0.1145 -1.9702 1.9816 24 6 0.3348 -4.3286 1.1865 25 8 2.2380 -3.1213 2.0587 26 1 -0.3633 -0.0283 1.0273 27 1 -0.3633 0.9037 -0.4891 28 1 -0.3634 -0.8755 -0.5380 29 1 1.7393 4.2345 -0.9695 30 1 3.4097 -5.1763 -2.3171 31 1 2.2854 -6.6780 -3.9108 32 1 -0.1639 -6.6144 -4.1464 33 1 -1.4933 -5.0430 -2.7968 34 1 -0.3775 -3.5459 -1.1929 35 1 -0.7793 -1.8248 1.3749 36 1 -0.1701 -2.3512 2.9624 37 1 0.6333 -1.0187 2.0980 38 1 0.9943 -5.0445 0.6961 39 1 0.0858 -4.6882 2.1850 40 1 -0.5789 -4.2171 0.6026 41 1 2.0923 -3.4393 2.9602 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597011958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:18 Heat of formation + Delta-G solvation = -56.044683 kcal Electronic energy + Delta-G solvation = -25143.563794 eV Core-core repulsion = 21604.832981 eV Total energy + Delta-G solvation = -3538.730814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75092 -38.93760 -37.40401 -36.67962 -34.85348 -32.67453 -31.82014 -30.90945 -29.99511 -27.92670 -27.46147 -26.22696 -24.54198 -22.72782 -22.11306 -20.82998 -18.90326 -18.49778 -17.18639 -16.49724 -16.32997 -16.17765 -15.74534 -15.60063 -15.14306 -14.45219 -14.12041 -14.02173 -13.88270 -13.57500 -13.29466 -12.99377 -12.75580 -12.52908 -12.41734 -12.24596 -12.11730 -11.80567 -11.74125 -11.56988 -11.38002 -11.34794 -10.90114 -10.66102 -10.53649 -10.29632 -9.94699 -9.84683 -9.06708 -9.00126 -8.54160 -8.01781 -7.75862 -6.40468 -3.99866 1.32820 1.47475 2.97712 3.10236 3.20578 3.22487 3.65594 3.80536 4.11730 4.18442 4.37886 4.74870 4.80255 4.84912 4.94105 4.94870 4.99864 5.09801 5.18332 5.35557 5.41531 5.51225 5.53231 5.63735 5.65589 5.68937 5.75005 5.93683 5.98729 6.01725 6.03298 6.15399 6.34510 6.36345 6.40464 6.51213 6.79091 7.46300 7.60310 7.86554 8.24731 8.49196 8.93830 9.27556 9.71544 10.71507 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016193 B = 0.006163 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.677950 B = 4542.230286 C = 5276.001944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.469 5.469 3 C -0.314 4.314 4 H 0.108 0.892 5 C 0.060 3.940 6 N -0.864 5.864 7 Si 0.877 3.123 8 H -0.275 1.275 9 H -0.286 1.286 10 H -0.266 1.266 11 C 0.477 3.523 12 O -0.525 6.525 13 C 0.077 3.923 14 H 0.100 0.900 15 O -0.269 6.269 16 C 0.138 3.862 17 C -0.154 4.154 18 C -0.080 4.080 19 C -0.168 4.168 20 C -0.079 4.079 21 C -0.219 4.219 22 C 0.120 3.880 23 C -0.195 4.195 24 C -0.182 4.182 25 O -0.531 6.531 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.274 0.726 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.273 -17.009 -0.808 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.194 5.194 3 C -0.441 4.441 4 H 0.125 0.875 5 C -0.145 4.145 6 N -0.500 5.500 7 Si 0.705 3.295 8 H -0.202 1.202 9 H -0.213 1.213 10 H -0.190 1.190 11 C 0.263 3.737 12 O -0.402 6.402 13 C 0.016 3.984 14 H 0.117 0.883 15 O -0.180 6.180 16 C 0.091 3.909 17 C -0.173 4.173 18 C -0.098 4.098 19 C -0.187 4.187 20 C -0.097 4.097 21 C -0.238 4.238 22 C 0.079 3.921 23 C -0.252 4.252 24 C -0.239 4.239 25 O -0.335 6.335 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.137 -16.550 -1.299 18.949 hybrid contribution -1.377 -0.085 -0.300 1.412 sum -10.514 -16.635 -1.599 19.744 Atomic orbital electron populations 1.22465 0.83988 1.01181 1.01785 1.43555 1.03645 1.05235 1.67001 1.19041 1.10769 0.85302 1.28989 0.87456 1.25345 0.97482 0.94811 0.96898 1.69726 1.43781 0.98155 1.38357 0.86972 0.80315 0.79060 0.83168 1.20187 1.21294 1.19048 1.19618 0.88084 0.83450 0.82581 1.90589 1.13626 1.86044 1.49933 1.22693 0.94904 0.89073 0.91699 0.88323 1.86316 1.35797 1.43527 1.52373 1.19281 0.91169 0.90822 0.89587 1.20489 1.00517 0.98018 0.98239 1.20938 0.94603 0.97509 0.96769 1.20990 0.94133 1.01415 1.02126 1.20892 0.99634 0.94610 0.94577 1.21358 0.93835 1.04355 1.04251 1.21472 0.85706 0.94291 0.90675 1.22966 0.99961 1.01336 1.00925 1.22669 1.00965 0.97548 1.02719 1.86853 1.29766 1.89322 1.27593 0.91628 0.91678 0.93206 0.91539 0.85067 0.85565 0.86202 0.86002 0.85388 0.91027 0.91630 0.89462 0.91221 0.91851 0.91458 0.78551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.94 7.15 59.84 0.43 1.37 16 2 N -0.47 -11.48 2.21 -122.20 -0.27 -11.75 16 3 C -0.31 -9.01 9.40 -14.93 -0.14 -9.15 16 4 H 0.11 3.48 7.88 -52.49 -0.41 3.06 16 5 C 0.06 1.68 5.33 -17.47 -0.09 1.58 16 6 N -0.86 -25.04 13.96 55.50 0.77 -24.27 16 7 Si 0.88 20.57 24.92 -169.99 -4.24 16.34 16 8 H -0.27 -5.88 6.69 56.52 0.38 -5.50 16 9 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 C 0.48 11.74 5.73 -10.99 -0.06 11.67 16 12 O -0.52 -15.40 16.55 -12.49 -0.21 -15.60 16 13 C 0.08 1.46 1.49 -27.88 -0.04 1.41 16 14 H 0.10 1.65 3.22 -51.93 -0.17 1.48 16 15 O -0.27 -5.36 9.04 -43.46 -0.39 -5.75 16 16 C 0.14 2.25 5.49 -39.21 -0.22 2.03 16 17 C -0.15 -2.23 9.99 -39.43 -0.39 -2.62 16 18 C -0.08 -0.93 10.04 -39.61 -0.40 -1.33 16 19 C -0.17 -1.83 10.04 -39.56 -0.40 -2.23 16 20 C -0.08 -0.90 10.04 -39.61 -0.40 -1.30 16 21 C -0.22 -3.00 7.36 -39.43 -0.29 -3.29 16 22 C 0.12 1.86 0.86 -90.62 -0.08 1.78 16 23 C -0.19 -2.62 6.78 37.16 0.25 -2.37 16 24 C -0.18 -2.18 7.40 37.16 0.27 -1.90 16 25 O -0.53 -9.24 12.42 -42.99 -0.53 -9.78 16 26 H 0.07 1.08 5.28 -51.93 -0.27 0.81 16 27 H 0.07 1.33 3.23 -51.93 -0.17 1.16 16 28 H 0.05 0.79 5.50 -51.93 -0.29 0.51 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 32 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 34 H 0.13 1.60 4.52 -52.48 -0.24 1.37 16 35 H 0.07 0.82 6.53 -51.93 -0.34 0.48 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.47 5.68 -51.93 -0.30 1.17 16 38 H 0.07 0.94 6.68 -51.93 -0.35 0.60 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.70 6.40 -51.93 -0.33 0.37 16 41 H 0.37 4.43 9.05 45.56 0.41 4.84 16 LS Contribution 317.91 15.07 4.79 4.79 Total: -1.00 -35.67 317.91 -5.77 -41.44 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -4.14 Total: 8.93 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -1.55 Total: -4.35 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.50 Total: -36.02 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -1.13 Total: -31.13 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.24 Total: 16.34 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.67 -5.77 -41.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597011958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.605 kcal (2) G-P(sol) polarization free energy of solvation -35.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds