Wall clock time and date at job start Tue Mar 31 2020 07:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37097 * 120.00413 * 2 1 4 4 H 1.07997 * 120.00367 * 142.01247 * 3 2 1 5 5 C 1.38951 * 119.99654 * 322.02317 * 3 2 1 6 6 N 1.31413 * 120.00245 * 159.80303 * 5 3 2 7 7 Si 1.86802 * 120.00076 * 339.79903 * 5 3 2 8 8 H 1.48498 * 109.46799 * 95.12778 * 7 5 3 9 9 H 1.48499 * 109.47151 * 215.12820 * 7 5 3 10 10 H 1.48504 * 109.47141 * 335.13135 * 7 5 3 11 11 C 1.34776 * 119.99782 * 180.02562 * 2 1 3 12 12 O 1.21298 * 119.99984 * 184.70864 * 11 2 1 13 13 C 1.50691 * 120.00499 * 4.71049 * 11 2 1 14 14 H 1.09004 * 109.47192 * 29.66146 * 13 11 2 15 15 O 1.42900 * 109.47940 * 149.66123 * 13 11 2 16 16 C 1.35895 * 117.00329 * 219.41232 * 15 13 11 17 17 C 1.38737 * 120.05576 * 174.40552 * 16 15 13 18 18 C 1.38145 * 119.94219 * 179.97438 * 17 16 15 19 19 C 1.38258 * 120.05674 * 359.97438 * 18 17 16 20 20 C 1.38267 * 120.11574 * 0.27764 * 19 18 17 21 21 C 1.38145 * 120.05084 * 359.44641 * 20 19 18 22 22 C 1.53006 * 109.47257 * 269.66080 * 13 11 2 23 23 C 1.52998 * 109.46760 * 62.52289 * 22 13 11 24 24 C 1.53000 * 109.47006 * 182.52213 * 22 13 11 25 25 O 1.42892 * 109.46858 * 302.52408 * 22 13 11 26 26 H 1.09006 * 109.47056 * 268.42452 * 1 2 3 27 27 H 1.08993 * 109.47275 * 28.42495 * 1 2 3 28 28 H 1.08996 * 109.47336 * 148.42945 * 1 2 3 29 29 H 0.96998 * 120.00509 * 179.97438 * 6 5 3 30 30 H 1.07997 * 120.02437 * 359.95670 * 17 16 15 31 31 H 1.08004 * 119.96612 * 180.02562 * 18 17 16 32 32 H 1.08008 * 119.94740 * 180.02562 * 19 18 17 33 33 H 1.08003 * 119.97651 * 179.70377 * 20 19 18 34 34 H 1.08006 * 120.02711 * 180.27570 * 21 20 19 35 35 H 1.09003 * 109.47386 * 57.47299 * 23 22 13 36 36 H 1.09001 * 109.46799 * 177.47383 * 23 22 13 37 37 H 1.08997 * 109.47404 * 297.47166 * 23 22 13 38 38 H 1.08997 * 109.47277 * 60.00350 * 24 22 13 39 39 H 1.09006 * 109.46971 * 180.02562 * 24 22 13 40 40 H 1.09005 * 109.47380 * 299.99736 * 24 22 13 41 41 H 0.96705 * 113.99964 * 180.02562 * 25 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.0589 1.2863 0.5756 5 6 1.6765 2.2632 -0.7405 6 7 2.0699 3.4835 -0.4524 7 14 0.4798 1.9751 -2.1457 8 1 -0.9105 2.1582 -1.6572 9 1 0.7534 2.9457 -3.2357 10 1 0.6452 0.5922 -2.6611 11 6 2.1388 -1.1672 -0.0005 12 8 3.3487 -1.1691 0.0857 13 6 1.3892 -2.4700 -0.1083 14 1 0.4725 -2.3158 -0.6776 15 8 2.2059 -3.4361 -0.7730 16 6 1.5873 -4.2654 -1.6542 17 6 2.3350 -5.1480 -2.4200 18 6 1.7037 -5.9904 -3.3146 19 6 0.3279 -5.9547 -3.4467 20 6 -0.4191 -5.0723 -2.6884 21 6 0.2068 -4.2319 -1.7882 22 6 1.0403 -2.9751 1.2932 23 6 0.1145 -1.9702 1.9816 24 6 0.3348 -4.3286 1.1865 25 8 2.2380 -3.1213 2.0587 26 1 -0.3633 -0.0283 1.0273 27 1 -0.3633 0.9037 -0.4891 28 1 -0.3634 -0.8755 -0.5380 29 1 1.7393 4.2345 -0.9695 30 1 3.4097 -5.1763 -2.3171 31 1 2.2854 -6.6780 -3.9108 32 1 -0.1639 -6.6144 -4.1464 33 1 -1.4933 -5.0430 -2.7968 34 1 -0.3775 -3.5459 -1.1929 35 1 -0.7793 -1.8248 1.3749 36 1 -0.1701 -2.3512 2.9624 37 1 0.6333 -1.0187 2.0980 38 1 0.9943 -5.0445 0.6961 39 1 0.0858 -4.6882 2.1850 40 1 -0.5789 -4.2171 0.6026 41 1 2.0923 -3.4393 2.9602 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597011958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:18 Heat of formation + Delta-G solvation = -83.489712 kcal Electronic energy + Delta-G solvation = -25144.753900 eV Core-core repulsion = 21604.832981 eV Total energy + Delta-G solvation = -3539.920919 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.08135 -40.33983 -38.81459 -37.87332 -36.81568 -34.42047 -33.43060 -31.86386 -31.04137 -29.30904 -28.78241 -27.65447 -26.39680 -23.70795 -23.14110 -22.26084 -20.49918 -19.69801 -19.16121 -17.94783 -17.84659 -17.53586 -17.24564 -16.73445 -16.54762 -15.75738 -15.52442 -15.38114 -14.97532 -14.83842 -14.69569 -14.43812 -14.16854 -14.14978 -13.90965 -13.73209 -13.16688 -13.13770 -12.99506 -12.75838 -12.63364 -12.50919 -12.35326 -12.19266 -11.90693 -11.72602 -11.63147 -11.13501 -10.95335 -10.38063 -9.93069 -9.76146 -9.13133 -8.55181 -6.21076 0.39958 0.49467 1.13781 1.28408 1.40619 1.65103 1.99855 2.13203 2.72419 2.83789 2.92725 3.00565 3.59828 3.61301 3.74723 3.87199 3.96185 3.99589 4.11272 4.18819 4.30056 4.46427 4.49399 4.55974 4.62262 4.67472 4.71957 4.72995 4.79945 4.94253 5.09871 5.12867 5.30921 5.38550 5.47315 5.48925 5.60842 5.88318 5.97650 6.37385 6.54463 6.85968 6.89644 7.18363 7.76455 8.62214 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016193 B = 0.006163 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.677950 B = 4542.230286 C = 5276.001944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.475 5.475 3 C -0.338 4.338 4 H 0.040 0.960 5 C 0.013 3.987 6 N -0.909 5.909 7 Si 0.951 3.049 8 H -0.226 1.226 9 H -0.288 1.288 10 H -0.264 1.264 11 C 0.465 3.535 12 O -0.596 6.596 13 C 0.086 3.914 14 H 0.125 0.875 15 O -0.309 6.309 16 C 0.100 3.900 17 C -0.180 4.180 18 C -0.078 4.078 19 C -0.160 4.160 20 C -0.075 4.075 21 C -0.223 4.223 22 C 0.118 3.882 23 C -0.193 4.193 24 C -0.169 4.169 25 O -0.570 6.570 26 H 0.095 0.905 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.282 0.718 30 H 0.116 0.884 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.141 0.859 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.046 0.954 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.498 -19.644 -2.493 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.198 5.198 3 C -0.466 4.466 4 H 0.058 0.942 5 C -0.189 4.189 6 N -0.546 5.546 7 Si 0.773 3.227 8 H -0.151 1.151 9 H -0.215 1.215 10 H -0.188 1.188 11 C 0.254 3.746 12 O -0.478 6.478 13 C 0.027 3.973 14 H 0.142 0.858 15 O -0.222 6.222 16 C 0.055 3.945 17 C -0.198 4.198 18 C -0.096 4.096 19 C -0.178 4.178 20 C -0.093 4.093 21 C -0.241 4.241 22 C 0.077 3.923 23 C -0.250 4.250 24 C -0.226 4.226 25 O -0.378 6.378 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.134 0.866 31 H 0.170 0.830 32 H 0.173 0.827 33 H 0.176 0.824 34 H 0.159 0.841 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -14.422 -19.198 -2.957 24.193 hybrid contribution 0.360 0.679 0.233 0.803 sum -14.063 -18.519 -2.723 23.412 Atomic orbital electron populations 1.22797 0.80262 1.02735 1.04401 1.43628 1.05903 1.03878 1.66439 1.18608 1.10047 0.88025 1.29905 0.94210 1.26176 0.99985 0.93736 0.99016 1.69846 1.45805 0.99348 1.39614 0.85825 0.79836 0.78709 0.78291 1.15060 1.21466 1.18823 1.20734 0.87801 0.85558 0.80546 1.90532 1.16950 1.87465 1.52834 1.22619 0.94013 0.86095 0.94618 0.85798 1.86254 1.37583 1.44448 1.53876 1.19624 0.92827 0.91648 0.90397 1.20678 1.00252 0.99301 0.99601 1.21281 0.95668 0.96871 0.95809 1.21476 0.93617 1.00991 1.01701 1.21352 1.01488 0.93322 0.93128 1.21532 0.92475 1.05105 1.05007 1.21656 0.85490 0.96755 0.88447 1.22955 0.99935 0.98817 1.03248 1.22558 1.00821 0.94501 1.04683 1.86812 1.31901 1.89804 1.29315 0.88742 0.92239 0.89048 0.90812 0.86556 0.82966 0.82703 0.82373 0.84143 0.88068 0.88332 0.93515 0.93172 0.89022 0.89031 0.76333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.41 7.15 127.77 0.91 2.32 16 2 N -0.47 -23.83 2.21 -658.91 -1.46 -25.29 16 3 C -0.34 -20.66 9.40 84.04 0.79 -19.87 16 4 H 0.04 2.88 7.88 -2.91 -0.02 2.86 16 5 C 0.01 0.76 5.33 84.93 0.45 1.21 16 6 N -0.91 -54.79 13.96 21.66 0.30 -54.49 16 7 Si 0.95 41.77 24.92 68.60 1.71 43.48 16 8 H -0.23 -8.25 6.69 99.48 0.67 -7.58 16 9 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 11 C 0.47 23.96 5.73 87.65 0.50 24.46 16 12 O -0.60 -38.04 16.55 14.15 0.23 -37.80 16 13 C 0.09 3.25 1.49 29.85 0.04 3.30 16 14 H 0.13 3.81 3.22 -2.39 -0.01 3.80 16 15 O -0.31 -12.69 9.04 -69.38 -0.63 -13.32 16 16 C 0.10 3.20 5.49 22.51 0.12 3.33 16 17 C -0.18 -5.20 9.99 22.37 0.22 -4.97 16 18 C -0.08 -1.62 10.04 22.25 0.22 -1.40 16 19 C -0.16 -2.72 10.04 22.28 0.22 -2.50 16 20 C -0.08 -1.34 10.04 22.25 0.22 -1.11 16 21 C -0.22 -5.35 7.36 22.37 0.16 -5.18 16 22 C 0.12 3.47 0.86 -10.79 -0.01 3.47 16 23 C -0.19 -4.66 6.78 71.98 0.49 -4.17 16 24 C -0.17 -3.48 7.40 71.98 0.53 -2.95 16 25 O -0.57 -20.41 12.42 -141.56 -1.76 -22.17 16 26 H 0.09 2.85 5.28 -2.38 -0.01 2.84 16 27 H 0.06 2.21 3.23 -2.39 -0.01 2.20 16 28 H 0.09 2.49 5.50 -2.39 -0.01 2.47 16 29 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 30 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 31 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 34 H 0.14 2.86 4.52 -2.91 -0.01 2.85 16 35 H 0.10 1.80 6.53 -2.39 -0.02 1.78 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.53 5.68 -2.39 -0.01 1.52 16 38 H 0.05 1.27 6.68 -2.39 -0.02 1.25 16 39 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.09 1.43 6.40 -2.38 -0.02 1.42 16 41 H 0.39 9.37 9.05 -74.05 -0.67 8.70 16 Total: -1.00 -89.26 317.91 3.67 -85.59 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.37 Total: 28.07 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 4.90 Total: -4.07 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -1.16 Total: -79.78 kcal Atomic # 8 Polarization: -71.14 SS G_CDS: -2.15 Total: -73.29 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.71 Total: 43.48 kcal Total: -89.26 3.67 -85.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597011958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.105 kcal (2) G-P(sol) polarization free energy of solvation -89.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds