Wall clock time and date at job start Tue Mar 31 2020 06:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34906 * 117.00151 * 2 1 4 4 O 1.21618 * 119.99830 * 0.02562 * 3 2 1 5 5 C 1.46476 * 119.99872 * 180.27580 * 3 2 1 6 6 O 1.34929 * 125.99594 * 359.41294 * 5 3 2 7 7 C 1.33912 * 109.38070 * 179.86385 * 6 5 3 8 8 C 1.50703 * 125.61015 * 180.12518 * 7 6 5 9 9 N 1.46901 * 109.46948 * 270.32670 * 8 7 6 10 10 C 1.46897 * 110.99813 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47141 * 185.35179 * 10 9 8 12 12 C 1.50692 * 115.55126 * 65.04826 * 11 10 9 13 13 H 1.08001 * 120.00090 * 265.44825 * 12 11 10 14 14 C 1.37876 * 120.00388 * 85.44754 * 12 11 10 15 15 N 1.31521 * 119.99617 * 353.59706 * 14 12 11 16 16 Si 1.86797 * 120.00637 * 173.59902 * 14 12 11 17 17 H 1.48504 * 109.47003 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47295 * 119.99834 * 16 14 12 19 19 H 1.48497 * 109.46994 * 240.00053 * 16 14 12 20 20 C 1.53001 * 117.49691 * 279.38009 * 11 10 9 21 21 C 1.53007 * 117.49768 * 210.72163 * 11 10 9 22 22 C 1.35169 * 108.77828 * 0.40846 * 7 6 5 23 23 C 1.36636 * 125.99220 * 179.72897 * 5 3 2 24 24 C 1.50700 * 126.64991 * 359.97394 * 23 5 3 25 25 H 1.09001 * 109.47418 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47025 * 299.99917 * 1 2 3 27 27 H 1.09007 * 109.46861 * 59.99992 * 1 2 3 28 28 H 1.08999 * 109.47072 * 30.32771 * 8 7 6 29 29 H 1.08995 * 109.47069 * 150.32959 * 8 7 6 30 30 H 1.00904 * 111.00131 * 303.95536 * 9 8 7 31 31 H 1.08997 * 109.47525 * 305.34915 * 10 9 8 32 32 H 1.09000 * 109.47563 * 65.35361 * 10 9 8 33 33 H 0.97003 * 120.00338 * 180.02562 * 15 14 12 34 34 H 1.08997 * 117.50162 * 359.97438 * 20 11 10 35 35 H 1.09003 * 117.49795 * 145.02113 * 20 11 10 36 36 H 1.08999 * 117.49426 * 214.97807 * 21 11 10 37 37 H 1.08991 * 117.49837 * 359.97244 * 21 11 10 38 38 H 1.07998 * 126.43101 * 179.77802 * 22 7 6 39 39 H 1.08999 * 109.47340 * 90.00416 * 24 23 5 40 40 H 1.09000 * 109.46916 * 210.00304 * 24 23 5 41 41 H 1.09000 * 109.47300 * 330.00128 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4021 2.2220 0.0005 5 6 3.5272 1.2786 -0.0061 6 8 4.3762 0.2299 -0.0009 7 6 5.6376 0.6794 -0.0122 8 6 6.8755 -0.1802 -0.0136 9 7 7.2819 -0.4556 1.3709 10 6 8.4885 -1.2926 1.4087 11 6 8.8036 -1.6680 2.8581 12 6 7.7821 -2.5411 3.5402 13 1 7.0046 -2.0936 4.1416 14 6 7.8399 -3.9111 3.3964 15 7 8.7061 -4.4491 2.5657 16 14 6.6881 -5.0032 4.3812 17 1 5.8169 -4.1588 5.2375 18 1 5.8471 -5.8004 3.4526 19 1 7.4849 -5.9185 5.2369 20 6 9.5300 -0.6293 3.7150 21 6 10.2729 -1.8769 3.2304 22 6 5.6179 2.0309 -0.0159 23 6 4.2712 2.4246 -0.0120 24 6 3.7470 3.8375 -0.0140 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 6.6647 -1.1199 -0.5242 29 1 7.6799 0.3421 -0.5313 30 1 7.4207 0.4018 1.8844 31 1 8.3205 -2.1989 0.8270 32 1 9.3275 -0.7399 0.9861 33 1 8.7466 -5.4129 2.4642 34 1 9.7839 0.3214 3.2461 35 1 9.2693 -0.5777 4.7722 36 1 10.5005 -2.6456 3.9689 37 1 11.0149 -1.7473 2.4427 38 1 6.4774 2.6849 -0.0212 39 1 3.6245 4.1810 1.0131 40 1 4.4532 4.4862 -0.5323 41 1 2.7844 3.8672 -0.5244 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597116046.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:02 Heat of formation + Delta-G solvation = -43.237757 kcal Electronic energy + Delta-G solvation = -23070.835643 eV Core-core repulsion = 19532.660180 eV Total energy + Delta-G solvation = -3538.175463 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.75270 -40.25227 -37.15844 -36.71332 -34.80635 -34.11379 -31.83676 -30.89585 -28.63465 -27.56943 -26.50183 -25.35118 -23.52449 -22.12648 -21.37245 -21.00718 -19.82343 -18.99529 -18.28528 -17.06496 -16.86948 -16.42269 -15.85534 -15.39806 -14.68046 -14.40352 -14.15715 -13.89850 -13.87129 -13.45409 -13.37211 -13.16712 -13.10836 -12.83157 -12.63936 -12.36904 -12.23772 -11.61660 -11.43316 -11.22974 -10.98745 -10.92465 -10.73642 -10.67388 -10.43093 -10.18262 -9.71590 -9.49962 -8.81879 -8.61975 -8.37645 -8.07138 -7.72508 -5.95306 -3.96467 0.79221 2.19028 2.28032 2.79220 2.98463 3.35179 3.43422 3.48685 4.44633 4.49999 4.64908 4.74372 4.88361 4.92200 5.00624 5.30485 5.32414 5.34528 5.36205 5.42644 5.45045 5.55432 5.64891 5.70033 5.89199 5.99568 6.12068 6.15730 6.26540 6.35481 6.44295 6.55516 6.71543 6.80298 6.92138 7.10684 7.45179 7.49687 7.55668 7.78081 7.97506 8.00049 8.54780 9.03290 9.67258 11.14630 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.003984 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.897273 B = 7026.193640 C = 8365.904650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.346 6.346 3 C 0.557 3.443 4 O -0.494 6.494 5 C -0.087 4.087 6 O -0.136 6.136 7 C 0.072 3.928 8 C 0.126 3.874 9 N -0.664 5.664 10 C 0.107 3.893 11 C 0.051 3.949 12 C -0.469 4.469 13 H 0.060 0.940 14 C 0.068 3.932 15 N -0.886 5.886 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.286 1.286 20 C -0.216 4.216 21 C -0.156 4.156 22 C -0.232 4.232 23 C -0.065 4.065 24 C -0.096 4.096 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.336 0.664 31 H 0.081 0.919 32 H 0.000 1.000 33 H 0.257 0.743 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.158 0.842 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.892 12.358 -7.914 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.262 6.262 3 C 0.403 3.597 4 O -0.385 6.385 5 C -0.137 4.137 6 O -0.030 6.030 7 C 0.018 3.982 8 C -0.003 4.003 9 N -0.295 5.295 10 C -0.020 4.020 11 C 0.051 3.949 12 C -0.507 4.507 13 H 0.078 0.922 14 C -0.134 4.134 15 N -0.524 5.524 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.213 1.213 20 C -0.253 4.253 21 C -0.195 4.195 22 C -0.252 4.252 23 C -0.067 4.067 24 C -0.153 4.153 25 H 0.123 0.877 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.078 0.922 30 H 0.153 0.847 31 H 0.099 0.901 32 H 0.018 0.982 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.176 0.824 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.611 11.594 -7.914 17.013 hybrid contribution 0.037 0.025 0.270 0.274 sum -9.574 11.620 -7.645 16.885 Atomic orbital electron populations 1.23334 0.75618 1.04094 1.02609 1.86715 1.23754 1.31813 1.83946 1.19177 0.85551 0.81998 0.72968 1.90882 1.64514 1.35748 1.47330 1.20337 0.87778 0.86065 1.19551 1.84165 1.15317 1.33989 1.69554 1.23062 0.84117 0.93583 0.97473 1.20552 0.88002 0.98134 0.93649 1.60293 1.38832 1.21485 1.08872 1.21614 0.86278 0.95153 0.99003 1.18799 0.91354 0.94978 0.89815 1.20346 1.11523 0.89835 1.29039 0.92199 1.24929 0.95412 0.97993 0.95072 1.70011 1.36197 1.10844 1.35355 0.86605 0.80943 0.80658 0.80212 1.19784 1.21162 1.21268 1.23007 1.09641 0.92476 1.00174 1.22523 0.96633 0.97953 1.02354 1.21465 0.97025 0.94371 1.12310 1.20567 0.92483 0.95533 0.98126 1.20465 1.01973 0.89733 1.03108 0.87733 0.91601 0.91729 0.88752 0.92168 0.84676 0.90111 0.98214 0.93360 0.92157 0.90463 0.89996 0.92086 0.82446 0.90452 0.91087 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.41 16 2 O -0.35 -4.83 10.58 -42.50 -0.45 -5.28 16 3 C 0.56 8.26 7.93 34.05 0.27 8.53 16 4 O -0.49 -7.39 14.53 -19.35 -0.28 -7.68 16 5 C -0.09 -1.35 7.18 -36.84 -0.26 -1.61 16 6 O -0.14 -2.30 10.67 4.77 0.05 -2.25 16 7 C 0.07 1.08 6.82 -35.40 -0.24 0.84 16 8 C 0.13 1.89 6.20 -4.97 -0.03 1.86 16 9 N -0.66 -12.33 6.37 -115.06 -0.73 -13.06 16 10 C 0.11 2.26 5.51 -3.82 -0.02 2.23 16 11 C 0.05 1.21 1.55 -155.66 -0.24 0.97 16 12 C -0.47 -12.68 8.74 -34.44 -0.30 -12.98 16 13 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 14 C 0.07 1.85 5.39 -17.82 -0.10 1.76 16 15 N -0.89 -24.85 12.92 55.43 0.72 -24.14 16 16 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 C -0.22 -4.53 9.96 -26.69 -0.27 -4.80 16 21 C -0.16 -3.58 9.41 -26.69 -0.25 -3.83 16 22 C -0.23 -3.00 10.72 -39.90 -0.43 -3.43 16 23 C -0.07 -0.88 6.20 -104.42 -0.65 -1.52 16 24 C -0.10 -1.03 9.81 36.01 0.35 -0.68 16 25 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.34 5.82 8.78 -39.29 -0.34 5.47 16 31 H 0.08 1.90 8.13 -51.93 -0.42 1.48 16 32 H 0.00 0.00 8.09 -51.93 -0.42 -0.42 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.08 2.02 8.14 -51.93 -0.42 1.59 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.95 6.45 -51.93 -0.33 0.62 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -30.39 357.11 -7.57 -37.96 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.14 Total: 3.81 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -1.10 Total: -11.25 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.02 Total: -37.20 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.68 Total: -15.21 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.39 -7.57 -37.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597116046.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.275 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds