Wall clock time and date at job start Tue Mar 31 2020 06:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34906 * 117.00151 * 2 1 4 4 O 1.21618 * 119.99830 * 0.02562 * 3 2 1 5 5 C 1.46476 * 119.99872 * 180.27580 * 3 2 1 6 6 O 1.34929 * 125.99594 * 359.41294 * 5 3 2 7 7 C 1.33912 * 109.38070 * 179.86385 * 6 5 3 8 8 C 1.50703 * 125.61015 * 180.12518 * 7 6 5 9 9 N 1.46901 * 109.46948 * 270.32670 * 8 7 6 10 10 C 1.46897 * 110.99813 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47141 * 185.35179 * 10 9 8 12 12 C 1.50692 * 115.55126 * 65.04826 * 11 10 9 13 13 H 1.08001 * 120.00090 * 265.44825 * 12 11 10 14 14 C 1.37876 * 120.00388 * 85.44754 * 12 11 10 15 15 N 1.31521 * 119.99617 * 353.59706 * 14 12 11 16 16 Si 1.86797 * 120.00637 * 173.59902 * 14 12 11 17 17 H 1.48504 * 109.47003 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47295 * 119.99834 * 16 14 12 19 19 H 1.48497 * 109.46994 * 240.00053 * 16 14 12 20 20 C 1.53001 * 117.49691 * 279.38009 * 11 10 9 21 21 C 1.53007 * 117.49768 * 210.72163 * 11 10 9 22 22 C 1.35169 * 108.77828 * 0.40846 * 7 6 5 23 23 C 1.36636 * 125.99220 * 179.72897 * 5 3 2 24 24 C 1.50700 * 126.64991 * 359.97394 * 23 5 3 25 25 H 1.09001 * 109.47418 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47025 * 299.99917 * 1 2 3 27 27 H 1.09007 * 109.46861 * 59.99992 * 1 2 3 28 28 H 1.08999 * 109.47072 * 30.32771 * 8 7 6 29 29 H 1.08995 * 109.47069 * 150.32959 * 8 7 6 30 30 H 1.00904 * 111.00131 * 303.95536 * 9 8 7 31 31 H 1.08997 * 109.47525 * 305.34915 * 10 9 8 32 32 H 1.09000 * 109.47563 * 65.35361 * 10 9 8 33 33 H 0.97003 * 120.00338 * 180.02562 * 15 14 12 34 34 H 1.08997 * 117.50162 * 359.97438 * 20 11 10 35 35 H 1.09003 * 117.49795 * 145.02113 * 20 11 10 36 36 H 1.08999 * 117.49426 * 214.97807 * 21 11 10 37 37 H 1.08991 * 117.49837 * 359.97244 * 21 11 10 38 38 H 1.07998 * 126.43101 * 179.77802 * 22 7 6 39 39 H 1.08999 * 109.47340 * 90.00416 * 24 23 5 40 40 H 1.09000 * 109.46916 * 210.00304 * 24 23 5 41 41 H 1.09000 * 109.47300 * 330.00128 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4021 2.2220 0.0005 5 6 3.5272 1.2786 -0.0061 6 8 4.3762 0.2299 -0.0009 7 6 5.6376 0.6794 -0.0122 8 6 6.8755 -0.1802 -0.0136 9 7 7.2819 -0.4556 1.3709 10 6 8.4885 -1.2926 1.4087 11 6 8.8036 -1.6680 2.8581 12 6 7.7821 -2.5411 3.5402 13 1 7.0046 -2.0936 4.1416 14 6 7.8399 -3.9111 3.3964 15 7 8.7061 -4.4491 2.5657 16 14 6.6881 -5.0032 4.3812 17 1 5.8169 -4.1588 5.2375 18 1 5.8471 -5.8004 3.4526 19 1 7.4849 -5.9185 5.2369 20 6 9.5300 -0.6293 3.7150 21 6 10.2729 -1.8769 3.2304 22 6 5.6179 2.0309 -0.0159 23 6 4.2712 2.4246 -0.0120 24 6 3.7470 3.8375 -0.0140 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 6.6647 -1.1199 -0.5242 29 1 7.6799 0.3421 -0.5313 30 1 7.4207 0.4018 1.8844 31 1 8.3205 -2.1989 0.8270 32 1 9.3275 -0.7399 0.9861 33 1 8.7466 -5.4129 2.4642 34 1 9.7839 0.3214 3.2461 35 1 9.2693 -0.5777 4.7722 36 1 10.5005 -2.6456 3.9689 37 1 11.0149 -1.7473 2.4427 38 1 6.4774 2.6849 -0.0212 39 1 3.6245 4.1810 1.0131 40 1 4.4532 4.4862 -0.5323 41 1 2.7844 3.8672 -0.5244 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597116046.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:02 Heat of formation + Delta-G solvation = -61.280764 kcal Electronic energy + Delta-G solvation = -23071.618047 eV Core-core repulsion = 19532.660180 eV Total energy + Delta-G solvation = -3538.957867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.85474 -41.30981 -38.84133 -37.76201 -36.26267 -35.15954 -33.88823 -32.08164 -29.55746 -28.65368 -27.76784 -27.17986 -24.99168 -23.23609 -22.79110 -22.41213 -21.05164 -20.70323 -19.34848 -18.18297 -18.08269 -17.94545 -17.03049 -16.89260 -16.47290 -15.82012 -15.47829 -15.29694 -15.13560 -14.63993 -14.51536 -14.33016 -14.15970 -14.01310 -13.71830 -13.46100 -13.31358 -13.11830 -13.05273 -12.88914 -12.58623 -12.52073 -12.33885 -11.97631 -11.92463 -11.76477 -11.34657 -10.74596 -10.70556 -10.36156 -9.93891 -9.69241 -9.12439 -8.03618 -6.08451 -0.31648 1.12815 1.28054 1.39914 1.43696 1.53242 1.71066 1.95786 2.48107 3.25074 3.27539 3.52532 3.67655 3.72549 3.80061 4.20782 4.24400 4.29216 4.32521 4.38345 4.45212 4.58637 4.61102 4.64778 4.69362 4.75504 4.76344 4.82629 4.97900 5.02613 5.05715 5.09011 5.17903 5.33075 5.42110 5.68531 5.76458 5.83851 5.89863 6.24961 6.48528 6.50379 6.68428 6.94803 7.56788 9.05299 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.003984 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.897273 B = 7026.193640 C = 8365.904650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.365 6.365 3 C 0.554 3.446 4 O -0.502 6.502 5 C -0.116 4.116 6 O -0.166 6.166 7 C 0.052 3.948 8 C 0.131 3.869 9 N -0.682 5.682 10 C 0.124 3.876 11 C 0.022 3.978 12 C -0.480 4.480 13 H 0.042 0.958 14 C 0.025 3.975 15 N -0.909 5.909 16 Si 0.937 3.063 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.281 1.281 20 C -0.187 4.187 21 C -0.163 4.163 22 C -0.213 4.213 23 C -0.061 4.061 24 C -0.094 4.094 25 H 0.129 0.871 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.344 0.656 31 H 0.047 0.953 32 H 0.025 0.975 33 H 0.256 0.744 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.191 0.809 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.735 14.375 -8.265 18.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.282 6.282 3 C 0.401 3.599 4 O -0.394 6.394 5 C -0.165 4.165 6 O -0.062 6.062 7 C -0.002 4.002 8 C 0.003 3.997 9 N -0.315 5.315 10 C -0.005 4.005 11 C 0.021 3.979 12 C -0.518 4.518 13 H 0.061 0.939 14 C -0.174 4.174 15 N -0.548 5.548 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.207 1.207 20 C -0.225 4.225 21 C -0.202 4.202 22 C -0.232 4.232 23 C -0.063 4.063 24 C -0.150 4.150 25 H 0.147 0.853 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.163 0.837 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.209 0.791 39 H 0.103 0.897 40 H 0.117 0.883 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.464 13.620 -8.260 18.528 hybrid contribution -0.073 -0.568 0.387 0.691 sum -9.537 13.051 -7.873 17.980 Atomic orbital electron populations 1.23677 0.73354 1.06034 1.03329 1.86696 1.26149 1.31608 1.83702 1.19231 0.85630 0.82182 0.72872 1.90859 1.64683 1.35869 1.47976 1.20742 0.88198 0.86595 1.20974 1.84121 1.16307 1.35223 1.70518 1.23185 0.83516 0.94513 0.98972 1.20531 0.89086 0.98216 0.91871 1.60094 1.37933 1.22036 1.11429 1.21222 0.88039 0.94628 0.96590 1.18915 0.90872 0.96397 0.91682 1.20563 1.11788 0.90617 1.28809 0.93949 1.25497 0.96770 0.99160 0.96008 1.70088 1.37456 1.10843 1.36431 0.85827 0.79436 0.79211 0.79060 1.19887 1.21211 1.20743 1.22994 1.06807 0.92995 0.99664 1.22442 0.96712 0.98588 1.02430 1.21825 0.97745 0.93672 1.09996 1.21016 0.92616 0.96249 0.96460 1.20546 1.02199 0.88437 1.03818 0.85275 0.91181 0.90725 0.90199 0.88641 0.83685 0.93493 0.95728 0.93513 0.88678 0.91017 0.92727 0.90523 0.79135 0.89700 0.88296 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.57 113.37 1.20 1.71 16 2 O -0.37 -10.27 10.58 -56.83 -0.60 -10.87 16 3 C 0.55 16.47 7.93 69.97 0.55 17.03 16 4 O -0.50 -14.85 14.53 19.45 0.28 -14.57 16 5 C -0.12 -3.54 7.18 24.04 0.17 -3.36 16 6 O -0.17 -5.65 10.67 -4.79 -0.05 -5.70 16 7 C 0.05 1.48 6.82 24.98 0.17 1.65 16 8 C 0.13 3.77 6.20 85.56 0.53 4.30 16 9 N -0.68 -24.50 6.37 -517.94 -3.30 -27.80 16 10 C 0.12 5.06 5.51 86.30 0.48 5.54 16 11 C 0.02 1.03 1.55 -52.93 -0.08 0.95 16 12 C -0.48 -26.16 8.74 25.60 0.22 -25.94 16 13 H 0.04 2.40 7.82 -2.91 -0.02 2.38 16 14 C 0.02 1.37 5.39 84.65 0.46 1.82 16 15 N -0.91 -51.76 12.92 21.45 0.28 -51.48 16 16 Si 0.94 44.78 29.54 68.60 2.03 46.81 16 17 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 20 C -0.19 -7.48 9.96 30.62 0.30 -7.17 16 21 C -0.16 -7.34 9.41 30.62 0.29 -7.05 16 22 C -0.21 -4.92 10.72 22.07 0.24 -4.68 16 23 C -0.06 -1.54 6.20 -19.74 -0.12 -1.66 16 24 C -0.09 -1.77 9.81 71.24 0.70 -1.07 16 25 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.17 8.14 -2.38 -0.02 1.16 16 28 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.34 11.15 8.78 -89.69 -0.79 10.36 16 31 H 0.05 2.22 8.13 -2.39 -0.02 2.20 16 32 H 0.02 0.88 8.09 -2.39 -0.02 0.86 16 33 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 34 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.07 2.92 8.14 -2.39 -0.02 2.91 16 36 H 0.05 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.19 3.01 8.06 -2.91 -0.02 2.98 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 1.58 6.45 -2.39 -0.02 1.56 16 Total: -1.00 -66.43 357.11 3.99 -62.44 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.25 Total: 19.09 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 5.11 Total: -17.93 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -3.02 Total: -79.28 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.37 Total: -31.13 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -66.43 3.99 -62.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597116046.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.162 kcal (2) G-P(sol) polarization free energy of solvation -66.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds